Gcaud3121.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3121.t1
Unique Name	Gcaud3121.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	633

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_914_length_16169_cov_4.297612	contig	NODE_914_length_16169_cov_4.297612:10978..12876 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707296.1
PFAMs	PGI
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00376,RC00563
KEGG ko	ko:K01810
KEGG Reaction	R02739,R02740,R03321
KEGG Pathway	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200
KEGG Module	M00001,M00004,M00114
Evalue	2.99e-275
EggNOG OGs	COG0166@1\|root,KOG2446@2759\|Eukaryota
EC	5.3.1.9
Description	glucose-6-phosphate isomerase activity
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3121	Gcaud3121	Gracilaria caudata M_176_S67 male	gene	NODE_914_length_16169_cov_4.297612 10978..12876 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3121.t1.stop1	Gcaud3121.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_914_length_16169_cov_4.297612 10978..10980 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3121.t1.CDS1	Gcaud3121.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_914_length_16169_cov_4.297612 10978..12876 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3121.t1.exon1	Gcaud3121.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_914_length_16169_cov_4.297612 10978..12876 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3121.t1.start1	Gcaud3121.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_914_length_16169_cov_4.297612 12874..12876 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3121.t1	Gcaud3121.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_914_length_16169_cov_4.297612 10978..12876 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_914_length_16169_cov_4.297612:10978..12876-
coding sequence from alignment at NODE_914_length_16169_cov_4.297612:10978..12876-

mRNA sequence

>Gcaud3121.t1 ID=Gcaud3121.t1|Name=Gcaud3121.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=633bp
MQAFLAPTAVPLRGSTAAAVSSTRVTDVHPARRAAPSMVVLGKPPNTSGI
PSPPPEDDSSSKSSTPLVSSLPQWKTLQRHKENVIDKTHLRQLLDDEARV
AELYAEYDGVYMDYSRQRITTETKKMLLELAEAMNLKERIKEMFSGTKIN
TTENRAVLHTALRAKRSEVLMLDGVDVVEQVHSVLSRIRKFTDLVRSGKH
LGATGKQIKNFVAVGIGGSYLGPDFVYEALKTDAEASSAGQQAGYSLHFL
ANVDPVDVKRALDGFDAEETMVIIVSKTFTTRETIVNAKTVRTWLWDSMG
TDASIVRQHMVACSTNMEKTKEFGIAPENVFPFWDWVGGRYSVCSSVGAL
PLSLVYGYNVFEKFLGGARSIDKHLVNAPLERNIPVLMGLMGVWNMSFMG
YKSRAMHPYTEALNKLPAHIQQVDMESNGKHVSRHGVELDFEVGEVDFGE
PGTLGQHSFFQLLHMGQIVPCTFIGFIESQNPTCQDGEPVSNHDELMSNF
FAQPDALARGKTAEECREEGRPEWLVPHVTFSGNRPSLSLLLPVLNAYTC
GQLLSIFEHRTAVQGFIWDINSFDQWGVELGKVLATKVRKQLNQARYHGK
DVSGFNDSTKRLIERYLYGSVGCAFDEIIDYE*

spliced messenger RNA

>Gcaud3121.t1 ID=Gcaud3121.t1|Name=Gcaud3121.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1899bp|location=Sequence derived from alignment at NODE_914_length_16169_cov_4.297612:10978..12876- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCGTTTCTGGCGCCTACGGCGGTTCCTCTGCGCGGAAGCACAGC
GGCTGCTGTCTCCTCTACGCGCGTGACCGATGTGCATCCCGCTCGTCGCG
CGGCCCCGAGCATGGTAGTGCTCGGAAAGCCTCCGAATACATCTGGTATA
CCCTCTCCACCTCCCGAGGACGACTCATCTTCGAAGTCATCTACTCCTTT
AGTATCTTCACTACCGCAATGGAAGACCTTGCAACGACACAAGGAAAACG
TCATCGACAAGACGCATTTGCGACAATTGCTCGATGATGAAGCAAGAGTT
GCAGAACTATATGCGGAATATGATGGCGTGTATATGGACTACTCCCGTCA
GAGGATTACTACTGAAACGAAGAAAATGTTACTCGAATTGGCTGAGGCTA
TGAACCTGAAAGAACGTATCAAGGAAATGTTCTCCGGGACGAAGATCAAT
ACAACTGAGAATCGAGCTGTTCTTCACACGGCGTTGCGCGCGAAAAGGAG
TGAAGTTCTGATGCTAGATGGCGTAGACGTTGTAGAACAAGTGCACTCTG
TACTTTCTCGCATCCGCAAGTTCACTGATCTTGTTCGATCTGGAAAGCAT
CTTGGTGCAACTGGGAAGCAAATCAAGAATTTCGTTGCTGTTGGCATTGG
CGGCAGTTATCTTGGTCCTGATTTTGTATACGAGGCATTGAAGACTGACG
CTGAAGCTTCTAGTGCTGGACAGCAAGCTGGATACTCGCTTCACTTCCTC
GCGAATGTTGATCCCGTTGACGTGAAGCGCGCGTTGGATGGATTCGATGC
AGAGGAGACAATGGTCATCATTGTGAGTAAGACGTTTACTACGCGAGAGA
CCATTGTGAATGCGAAGACGGTCAGAACCTGGCTTTGGGATAGTATGGGG
ACTGACGCTAGTATTGTGCGTCAACACATGGTTGCCTGCAGCACGAACAT
GGAAAAGACCAAAGAGTTTGGTATTGCTCCGGAGAACGTATTTCCGTTTT
GGGATTGGGTCGGTGGACGTTATTCCGTGTGCTCCTCAGTTGGAGCATTG
CCATTGAGTCTTGTTTATGGCTACAATGTGTTTGAAAAGTTCCTGGGTGG
TGCCCGTAGCATTGATAAGCACCTTGTCAACGCTCCATTGGAAAGAAACA
TTCCGGTTTTGATGGGACTGATGGGGGTGTGGAATATGAGCTTCATGGGC
TACAAGTCACGGGCTATGCACCCCTACACCGAGGCTTTGAATAAGCTACC
AGCACATATTCAGCAGGTTGACATGGAGAGTAATGGGAAACACGTTTCTC
GACATGGGGTCGAGCTGGACTTCGAGGTCGGAGAAGTCGATTTTGGAGAG
CCAGGAACATTGGGTCAACACAGCTTCTTCCAGTTGTTGCACATGGGGCA
GATTGTACCGTGTACCTTCATCGGCTTCATTGAGTCTCAGAACCCTACTT
GTCAAGACGGCGAACCCGTCAGCAATCACGATGAACTTATGTCGAACTTC
TTCGCCCAACCGGATGCCTTGGCGAGAGGAAAGACTGCTGAGGAATGCCG
AGAAGAGGGACGTCCCGAATGGCTGGTTCCTCATGTTACGTTTAGTGGGA
ATCGACCCTCATTGTCTCTCCTGCTTCCTGTACTGAATGCGTATACTTGT
GGGCAGTTACTGTCCATATTCGAACATCGTACGGCAGTGCAAGGATTCAT
ATGGGACATCAACAGTTTCGATCAATGGGGCGTTGAACTTGGAAAGGTTC
TGGCTACCAAGGTGCGCAAGCAGCTCAACCAGGCTAGATATCATGGAAAG
GATGTCAGCGGGTTCAACGATTCCACGAAGCGTCTCATTGAACGCTATCT
GTACGGCTCAGTCGGATGCGCGTTTGATGAGATTATCGACTACGAGTGA

protein sequence of Gcaud3121.t1

>Gcaud3121.t1 ID=Gcaud3121.t1|Name=Gcaud3121.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=633bp
MQAFLAPTAVPLRGSTAAAVSSTRVTDVHPARRAAPSMVVLGKPPNTSGI
PSPPPEDDSSSKSSTPLVSSLPQWKTLQRHKENVIDKTHLRQLLDDEARV
AELYAEYDGVYMDYSRQRITTETKKMLLELAEAMNLKERIKEMFSGTKIN
TTENRAVLHTALRAKRSEVLMLDGVDVVEQVHSVLSRIRKFTDLVRSGKH
LGATGKQIKNFVAVGIGGSYLGPDFVYEALKTDAEASSAGQQAGYSLHFL
ANVDPVDVKRALDGFDAEETMVIIVSKTFTTRETIVNAKTVRTWLWDSMG
TDASIVRQHMVACSTNMEKTKEFGIAPENVFPFWDWVGGRYSVCSSVGAL
PLSLVYGYNVFEKFLGGARSIDKHLVNAPLERNIPVLMGLMGVWNMSFMG
YKSRAMHPYTEALNKLPAHIQQVDMESNGKHVSRHGVELDFEVGEVDFGE
PGTLGQHSFFQLLHMGQIVPCTFIGFIESQNPTCQDGEPVSNHDELMSNF
FAQPDALARGKTAEECREEGRPEWLVPHVTFSGNRPSLSLLLPVLNAYTC
GQLLSIFEHRTAVQGFIWDINSFDQWGVELGKVLATKVRKQLNQARYHGK
DVSGFNDSTKRLIERYLYGSVGCAFDEIIDYE*

mRNA from alignment at NODE_914_length_16169_cov_4.297612:10978..12876-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3121.t1 ID=Gcaud3121.t1|Name=Gcaud3121.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1899bp|location=Sequence derived from alignment at NODE_914_length_16169_cov_4.297612:10978..12876- (Gracilaria caudata M_176_S67 male)
ATGCAAGCGTTTCTGGCGCCTACGGCGGTTCCTCTGCGCGGAAGCACAGC
GGCTGCTGTCTCCTCTACGCGCGTGACCGATGTGCATCCCGCTCGTCGCG
CGGCCCCGAGCATGGTAGTGCTCGGAAAGCCTCCGAATACATCTGGTATA
CCCTCTCCACCTCCCGAGGACGACTCATCTTCGAAGTCATCTACTCCTTT
AGTATCTTCACTACCGCAATGGAAGACCTTGCAACGACACAAGGAAAACG
TCATCGACAAGACGCATTTGCGACAATTGCTCGATGATGAAGCAAGAGTT
GCAGAACTATATGCGGAATATGATGGCGTGTATATGGACTACTCCCGTCA
GAGGATTACTACTGAAACGAAGAAAATGTTACTCGAATTGGCTGAGGCTA
TGAACCTGAAAGAACGTATCAAGGAAATGTTCTCCGGGACGAAGATCAAT
ACAACTGAGAATCGAGCTGTTCTTCACACGGCGTTGCGCGCGAAAAGGAG
TGAAGTTCTGATGCTAGATGGCGTAGACGTTGTAGAACAAGTGCACTCTG
TACTTTCTCGCATCCGCAAGTTCACTGATCTTGTTCGATCTGGAAAGCAT
CTTGGTGCAACTGGGAAGCAAATCAAGAATTTCGTTGCTGTTGGCATTGG
CGGCAGTTATCTTGGTCCTGATTTTGTATACGAGGCATTGAAGACTGACG
CTGAAGCTTCTAGTGCTGGACAGCAAGCTGGATACTCGCTTCACTTCCTC
GCGAATGTTGATCCCGTTGACGTGAAGCGCGCGTTGGATGGATTCGATGC
AGAGGAGACAATGGTCATCATTGTGAGTAAGACGTTTACTACGCGAGAGA
CCATTGTGAATGCGAAGACGGTCAGAACCTGGCTTTGGGATAGTATGGGG
ACTGACGCTAGTATTGTGCGTCAACACATGGTTGCCTGCAGCACGAACAT
GGAAAAGACCAAAGAGTTTGGTATTGCTCCGGAGAACGTATTTCCGTTTT
GGGATTGGGTCGGTGGACGTTATTCCGTGTGCTCCTCAGTTGGAGCATTG
CCATTGAGTCTTGTTTATGGCTACAATGTGTTTGAAAAGTTCCTGGGTGG
TGCCCGTAGCATTGATAAGCACCTTGTCAACGCTCCATTGGAAAGAAACA
TTCCGGTTTTGATGGGACTGATGGGGGTGTGGAATATGAGCTTCATGGGC
TACAAGTCACGGGCTATGCACCCCTACACCGAGGCTTTGAATAAGCTACC
AGCACATATTCAGCAGGTTGACATGGAGAGTAATGGGAAACACGTTTCTC
GACATGGGGTCGAGCTGGACTTCGAGGTCGGAGAAGTCGATTTTGGAGAG
CCAGGAACATTGGGTCAACACAGCTTCTTCCAGTTGTTGCACATGGGGCA
GATTGTACCGTGTACCTTCATCGGCTTCATTGAGTCTCAGAACCCTACTT
GTCAAGACGGCGAACCCGTCAGCAATCACGATGAACTTATGTCGAACTTC
TTCGCCCAACCGGATGCCTTGGCGAGAGGAAAGACTGCTGAGGAATGCCG
AGAAGAGGGACGTCCCGAATGGCTGGTTCCTCATGTTACGTTTAGTGGGA
ATCGACCCTCATTGTCTCTCCTGCTTCCTGTACTGAATGCGTATACTTGT
GGGCAGTTACTGTCCATATTCGAACATCGTACGGCAGTGCAAGGATTCAT
ATGGGACATCAACAGTTTCGATCAATGGGGCGTTGAACTTGGAAAGGTTC
TGGCTACCAAGGTGCGCAAGCAGCTCAACCAGGCTAGATATCATGGAAAG
GATGTCAGCGGGTTCAACGATTCCACGAAGCGTCTCATTGAACGCTATCT
GTACGGCTCAGTCGGATGCGCGTTTGATGAGATTATCGACTACGAGTGA

Coding sequence (CDS) from alignment at NODE_914_length_16169_cov_4.297612:10978..12876-

>Gcaud3121.t1 ID=Gcaud3121.t1|Name=Gcaud3121.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1899bp|location=Sequence derived from alignment at NODE_914_length_16169_cov_4.297612:10978..12876- (Gracilaria caudata M_176_S67 male)
ATGCAAGCGTTTCTGGCGCCTACGGCGGTTCCTCTGCGCGGAAGCACAGC
GGCTGCTGTCTCCTCTACGCGCGTGACCGATGTGCATCCCGCTCGTCGCG
CGGCCCCGAGCATGGTAGTGCTCGGAAAGCCTCCGAATACATCTGGTATA
CCCTCTCCACCTCCCGAGGACGACTCATCTTCGAAGTCATCTACTCCTTT
AGTATCTTCACTACCGCAATGGAAGACCTTGCAACGACACAAGGAAAACG
TCATCGACAAGACGCATTTGCGACAATTGCTCGATGATGAAGCAAGAGTT
GCAGAACTATATGCGGAATATGATGGCGTGTATATGGACTACTCCCGTCA
GAGGATTACTACTGAAACGAAGAAAATGTTACTCGAATTGGCTGAGGCTA
TGAACCTGAAAGAACGTATCAAGGAAATGTTCTCCGGGACGAAGATCAAT
ACAACTGAGAATCGAGCTGTTCTTCACACGGCGTTGCGCGCGAAAAGGAG
TGAAGTTCTGATGCTAGATGGCGTAGACGTTGTAGAACAAGTGCACTCTG
TACTTTCTCGCATCCGCAAGTTCACTGATCTTGTTCGATCTGGAAAGCAT
CTTGGTGCAACTGGGAAGCAAATCAAGAATTTCGTTGCTGTTGGCATTGG
CGGCAGTTATCTTGGTCCTGATTTTGTATACGAGGCATTGAAGACTGACG
CTGAAGCTTCTAGTGCTGGACAGCAAGCTGGATACTCGCTTCACTTCCTC
GCGAATGTTGATCCCGTTGACGTGAAGCGCGCGTTGGATGGATTCGATGC
AGAGGAGACAATGGTCATCATTGTGAGTAAGACGTTTACTACGCGAGAGA
CCATTGTGAATGCGAAGACGGTCAGAACCTGGCTTTGGGATAGTATGGGG
ACTGACGCTAGTATTGTGCGTCAACACATGGTTGCCTGCAGCACGAACAT
GGAAAAGACCAAAGAGTTTGGTATTGCTCCGGAGAACGTATTTCCGTTTT
GGGATTGGGTCGGTGGACGTTATTCCGTGTGCTCCTCAGTTGGAGCATTG
CCATTGAGTCTTGTTTATGGCTACAATGTGTTTGAAAAGTTCCTGGGTGG
TGCCCGTAGCATTGATAAGCACCTTGTCAACGCTCCATTGGAAAGAAACA
TTCCGGTTTTGATGGGACTGATGGGGGTGTGGAATATGAGCTTCATGGGC
TACAAGTCACGGGCTATGCACCCCTACACCGAGGCTTTGAATAAGCTACC
AGCACATATTCAGCAGGTTGACATGGAGAGTAATGGGAAACACGTTTCTC
GACATGGGGTCGAGCTGGACTTCGAGGTCGGAGAAGTCGATTTTGGAGAG
CCAGGAACATTGGGTCAACACAGCTTCTTCCAGTTGTTGCACATGGGGCA
GATTGTACCGTGTACCTTCATCGGCTTCATTGAGTCTCAGAACCCTACTT
GTCAAGACGGCGAACCCGTCAGCAATCACGATGAACTTATGTCGAACTTC
TTCGCCCAACCGGATGCCTTGGCGAGAGGAAAGACTGCTGAGGAATGCCG
AGAAGAGGGACGTCCCGAATGGCTGGTTCCTCATGTTACGTTTAGTGGGA
ATCGACCCTCATTGTCTCTCCTGCTTCCTGTACTGAATGCGTATACTTGT
GGGCAGTTACTGTCCATATTCGAACATCGTACGGCAGTGCAAGGATTCAT
ATGGGACATCAACAGTTTCGATCAATGGGGCGTTGAACTTGGAAAGGTTC
TGGCTACCAAGGTGCGCAAGCAGCTCAACCAGGCTAGATATCATGGAAAG
GATGTCAGCGGGTTCAACGATTCCACGAAGCGTCTCATTGAACGCTATCT
GTACGGCTCAGTCGGATGCGCGTTTGATGAGATTATCGACTACGAGTGA