Gcaud3120.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3120.t1
Unique Name	Gcaud3120.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	686

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_914_length_16169_cov_4.297612	contig	NODE_914_length_16169_cov_4.297612:8434..10491 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	653948.CCA25845
PFAMs	ATG16,WD40
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K17890
KEGG Pathway	ko04136,ko04138,ko04140,ko04621,map04136,map04138,map04140,map04621
GOs	GO:0000045,GO:0000421,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005776,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006914,GO:0006950,GO:0006952,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010498,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0016740,GO:0019538,GO:0019776,GO:0019941,GO:0022607,GO:0030163,GO:0030587,GO:0031090,GO:0031154,GO:0032502,GO:0032991,GO:0034274,GO:0035973,GO:0042742,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0050830,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051703,GO:0051704,GO:0051707,GO:0061912,GO:0061919,GO:0070925,GO:0071704,GO:0071840,GO:0090382,GO:0090702,GO:0098542,GO:0098588,GO:0098657,GO:0098805,GO:0099120,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905037,GO:1990234
Evalue	5.53e-11
EggNOG OGs	KOG0288@1\|root,KOG0288@2759\|Eukaryota
Description	negative stranded viral RNA replication
COG category	S
BRITE	ko00000,ko00001,ko03029,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3120	Gcaud3120	Gracilaria caudata M_176_S67 male	gene	NODE_914_length_16169_cov_4.297612 8434..10491 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3120.t1.start1	Gcaud3120.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_914_length_16169_cov_4.297612 8434..8436 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3120.t1.CDS1	Gcaud3120.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_914_length_16169_cov_4.297612 8434..10491 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3120.t1.exon1	Gcaud3120.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_914_length_16169_cov_4.297612 8434..10491 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3120.t1.stop1	Gcaud3120.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_914_length_16169_cov_4.297612 10489..10491 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3120.t1	Gcaud3120.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_914_length_16169_cov_4.297612 8434..10491 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_914_length_16169_cov_4.297612:8434..10491+
coding sequence from alignment at NODE_914_length_16169_cov_4.297612:8434..10491+

mRNA sequence

>Gcaud3120.t1 ID=Gcaud3120.t1|Name=Gcaud3120.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=686bp
MGEDSTSQSLKPPVAEPAPISKPQATARQPSPAQKLDATKASTLRRPAST
KQTLPPEDDPQSELNVLRREVRKLQAEVRDAAMQVAAQQDEIVSLREALS
AAEAEAEDALSRESNLRVQLQAQRLHRQRIEGTMAAAEALVASLRDMITE
QTFVQGPSFDDAPQGPVASAESDLDLILSRISDGDHLKQPSDLSQLQSTV
VAAESFRVDPEVISIDMNDLQPLSRPAHEIGDTTSVTPSATPVSEQLTTN
RPASFQEAPTNAAPTSQQTSAATHAHRLQRHSMPAVPSDSVSAAQTAHAT
SNLLRSAFGQTSNASRQAPTIRSSGVEAVEHLPPEVAPLGKGDNVMFRAQ
NPQPLPSAGCSRACSAHSGEVYALASTLDGNWIASGGDDRVVNVYNSSGM
SCASISESPRSITALAFHHSVDQSNAEFNVIYAGSSDGTIRSLKRHPRRR
GKWTLGSVFPVHTQAVRRMISLTSTTQILSCSTDRTIKVSDIENAKRPFT
AAASSAVLDIGIFESRNGLLVSGHKDGCIRLWSLKDQNTCIGGSKLHTKG
IVSVACLADGHGVVSLGRDNVIRLSDTRMDTVGAVREMDGTIDTVSDWHR
LSVTGQHVSCGMGRQGDVGFWNVESGKLMRRITSQASASDADVIDMVTRK
LRNPGSVVVPHWTSSGQFVCAHRMRQVSFWGVHNI*

spliced messenger RNA

>Gcaud3120.t1 ID=Gcaud3120.t1|Name=Gcaud3120.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2058bp|location=Sequence derived from alignment at NODE_914_length_16169_cov_4.297612:8434..10491+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGAAGACTCTACTTCTCAATCTCTGAAACCACCCGTCGCCGAACC
AGCACCCATTTCGAAGCCGCAGGCTACTGCAAGGCAGCCTTCTCCAGCGC
AAAAACTTGACGCGACAAAGGCTTCAACTCTCCGGCGACCTGCTTCCACT
AAGCAAACCCTTCCCCCAGAAGATGACCCGCAGTCCGAGCTCAACGTCCT
ACGTCGAGAGGTACGTAAATTACAAGCAGAAGTACGCGATGCAGCGATGC
AAGTGGCTGCCCAGCAGGACGAGATTGTTTCCCTGCGCGAGGCGTTGAGT
GCGGCCGAAGCAGAGGCGGAGGATGCGTTATCTCGTGAATCAAACCTACG
CGTACAACTACAAGCCCAACGCTTGCACCGTCAACGCATTGAAGGCACTA
TGGCCGCTGCCGAAGCTCTTGTGGCGTCTTTGCGTGACATGATTACGGAA
CAGACTTTCGTGCAGGGCCCTTCTTTCGATGATGCACCACAGGGGCCGGT
GGCCTCTGCAGAAAGCGACCTAGACTTGATACTTAGTCGTATATCCGATG
GAGACCATCTCAAGCAGCCATCAGACCTCTCTCAGCTCCAATCGACCGTC
GTCGCAGCTGAAAGTTTCAGAGTCGATCCGGAAGTGATCTCAATCGACAT
GAATGATCTGCAGCCACTCTCACGACCAGCTCATGAAATTGGAGATACCA
CCTCAGTGACACCTTCTGCTACTCCTGTCAGTGAGCAACTGACGACAAAT
AGGCCGGCTTCCTTTCAAGAAGCACCAACCAATGCAGCACCAACCTCTCA
GCAAACTTCAGCCGCAACGCATGCACACCGGTTACAACGACATTCAATGC
CTGCAGTCCCCTCTGACTCCGTTTCAGCAGCCCAGACGGCGCACGCGACA
TCTAACTTGCTGCGTTCTGCATTTGGACAGACTAGTAATGCTTCTCGTCA
GGCGCCCACGATCCGAAGCTCTGGCGTTGAAGCTGTTGAACATCTACCCC
CCGAAGTTGCCCCATTAGGAAAAGGAGATAATGTGATGTTTCGGGCTCAG
AATCCGCAACCTCTTCCGAGCGCGGGGTGTTCTCGGGCTTGCAGCGCTCA
CAGCGGAGAAGTATACGCTCTTGCATCAACCCTCGATGGGAATTGGATTG
CGTCTGGAGGCGATGATAGGGTTGTGAATGTATACAACAGTTCGGGAATG
TCCTGTGCATCCATTTCCGAGAGTCCCCGTTCGATCACAGCGCTGGCATT
CCACCACTCTGTAGATCAAAGCAACGCAGAATTCAATGTTATCTACGCAG
GCAGCAGTGATGGTACAATTCGCAGTTTGAAGAGGCATCCAAGACGCCGA
GGAAAGTGGACTTTGGGCTCTGTCTTCCCCGTGCACACTCAAGCTGTGAG
GCGCATGATCTCTTTGACCTCAACAACGCAAATACTGTCATGCTCAACGG
ATCGCACAATCAAAGTCTCGGACATTGAAAACGCGAAAAGACCATTCACA
GCAGCTGCCTCATCTGCAGTGCTCGACATTGGCATCTTCGAATCACGGAA
CGGACTTTTGGTATCTGGGCATAAAGACGGGTGCATACGTTTGTGGTCGC
TAAAAGACCAAAACACTTGCATTGGAGGATCAAAACTGCATACCAAAGGT
ATTGTTTCTGTTGCCTGTCTGGCGGACGGACACGGTGTCGTTTCTCTAGG
AAGGGATAATGTGATTCGTTTGAGTGATACCAGGATGGACACTGTCGGTG
CAGTTCGGGAGATGGATGGGACGATCGACACCGTCTCAGACTGGCATCGT
TTGTCGGTTACAGGCCAACATGTTTCATGCGGCATGGGACGCCAAGGAGA
TGTGGGTTTCTGGAATGTAGAATCTGGAAAGCTTATGCGTCGTATCACAT
CTCAGGCATCAGCATCAGACGCAGATGTCATCGATATGGTGACACGGAAG
CTTCGTAATCCGGGATCAGTTGTAGTTCCCCACTGGACATCTTCGGGGCA
GTTCGTCTGCGCACATCGCATGCGGCAAGTATCTTTCTGGGGTGTGCATA
ATATATGA

protein sequence of Gcaud3120.t1

>Gcaud3120.t1 ID=Gcaud3120.t1|Name=Gcaud3120.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=686bp
MGEDSTSQSLKPPVAEPAPISKPQATARQPSPAQKLDATKASTLRRPAST
KQTLPPEDDPQSELNVLRREVRKLQAEVRDAAMQVAAQQDEIVSLREALS
AAEAEAEDALSRESNLRVQLQAQRLHRQRIEGTMAAAEALVASLRDMITE
QTFVQGPSFDDAPQGPVASAESDLDLILSRISDGDHLKQPSDLSQLQSTV
VAAESFRVDPEVISIDMNDLQPLSRPAHEIGDTTSVTPSATPVSEQLTTN
RPASFQEAPTNAAPTSQQTSAATHAHRLQRHSMPAVPSDSVSAAQTAHAT
SNLLRSAFGQTSNASRQAPTIRSSGVEAVEHLPPEVAPLGKGDNVMFRAQ
NPQPLPSAGCSRACSAHSGEVYALASTLDGNWIASGGDDRVVNVYNSSGM
SCASISESPRSITALAFHHSVDQSNAEFNVIYAGSSDGTIRSLKRHPRRR
GKWTLGSVFPVHTQAVRRMISLTSTTQILSCSTDRTIKVSDIENAKRPFT
AAASSAVLDIGIFESRNGLLVSGHKDGCIRLWSLKDQNTCIGGSKLHTKG
IVSVACLADGHGVVSLGRDNVIRLSDTRMDTVGAVREMDGTIDTVSDWHR
LSVTGQHVSCGMGRQGDVGFWNVESGKLMRRITSQASASDADVIDMVTRK
LRNPGSVVVPHWTSSGQFVCAHRMRQVSFWGVHNI*

mRNA from alignment at NODE_914_length_16169_cov_4.297612:8434..10491+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3120.t1 ID=Gcaud3120.t1|Name=Gcaud3120.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2058bp|location=Sequence derived from alignment at NODE_914_length_16169_cov_4.297612:8434..10491+ (Gracilaria caudata M_176_S67 male)
ATGGGGGAAGACTCTACTTCTCAATCTCTGAAACCACCCGTCGCCGAACC
AGCACCCATTTCGAAGCCGCAGGCTACTGCAAGGCAGCCTTCTCCAGCGC
AAAAACTTGACGCGACAAAGGCTTCAACTCTCCGGCGACCTGCTTCCACT
AAGCAAACCCTTCCCCCAGAAGATGACCCGCAGTCCGAGCTCAACGTCCT
ACGTCGAGAGGTACGTAAATTACAAGCAGAAGTACGCGATGCAGCGATGC
AAGTGGCTGCCCAGCAGGACGAGATTGTTTCCCTGCGCGAGGCGTTGAGT
GCGGCCGAAGCAGAGGCGGAGGATGCGTTATCTCGTGAATCAAACCTACG
CGTACAACTACAAGCCCAACGCTTGCACCGTCAACGCATTGAAGGCACTA
TGGCCGCTGCCGAAGCTCTTGTGGCGTCTTTGCGTGACATGATTACGGAA
CAGACTTTCGTGCAGGGCCCTTCTTTCGATGATGCACCACAGGGGCCGGT
GGCCTCTGCAGAAAGCGACCTAGACTTGATACTTAGTCGTATATCCGATG
GAGACCATCTCAAGCAGCCATCAGACCTCTCTCAGCTCCAATCGACCGTC
GTCGCAGCTGAAAGTTTCAGAGTCGATCCGGAAGTGATCTCAATCGACAT
GAATGATCTGCAGCCACTCTCACGACCAGCTCATGAAATTGGAGATACCA
CCTCAGTGACACCTTCTGCTACTCCTGTCAGTGAGCAACTGACGACAAAT
AGGCCGGCTTCCTTTCAAGAAGCACCAACCAATGCAGCACCAACCTCTCA
GCAAACTTCAGCCGCAACGCATGCACACCGGTTACAACGACATTCAATGC
CTGCAGTCCCCTCTGACTCCGTTTCAGCAGCCCAGACGGCGCACGCGACA
TCTAACTTGCTGCGTTCTGCATTTGGACAGACTAGTAATGCTTCTCGTCA
GGCGCCCACGATCCGAAGCTCTGGCGTTGAAGCTGTTGAACATCTACCCC
CCGAAGTTGCCCCATTAGGAAAAGGAGATAATGTGATGTTTCGGGCTCAG
AATCCGCAACCTCTTCCGAGCGCGGGGTGTTCTCGGGCTTGCAGCGCTCA
CAGCGGAGAAGTATACGCTCTTGCATCAACCCTCGATGGGAATTGGATTG
CGTCTGGAGGCGATGATAGGGTTGTGAATGTATACAACAGTTCGGGAATG
TCCTGTGCATCCATTTCCGAGAGTCCCCGTTCGATCACAGCGCTGGCATT
CCACCACTCTGTAGATCAAAGCAACGCAGAATTCAATGTTATCTACGCAG
GCAGCAGTGATGGTACAATTCGCAGTTTGAAGAGGCATCCAAGACGCCGA
GGAAAGTGGACTTTGGGCTCTGTCTTCCCCGTGCACACTCAAGCTGTGAG
GCGCATGATCTCTTTGACCTCAACAACGCAAATACTGTCATGCTCAACGG
ATCGCACAATCAAAGTCTCGGACATTGAAAACGCGAAAAGACCATTCACA
GCAGCTGCCTCATCTGCAGTGCTCGACATTGGCATCTTCGAATCACGGAA
CGGACTTTTGGTATCTGGGCATAAAGACGGGTGCATACGTTTGTGGTCGC
TAAAAGACCAAAACACTTGCATTGGAGGATCAAAACTGCATACCAAAGGT
ATTGTTTCTGTTGCCTGTCTGGCGGACGGACACGGTGTCGTTTCTCTAGG
AAGGGATAATGTGATTCGTTTGAGTGATACCAGGATGGACACTGTCGGTG
CAGTTCGGGAGATGGATGGGACGATCGACACCGTCTCAGACTGGCATCGT
TTGTCGGTTACAGGCCAACATGTTTCATGCGGCATGGGACGCCAAGGAGA
TGTGGGTTTCTGGAATGTAGAATCTGGAAAGCTTATGCGTCGTATCACAT
CTCAGGCATCAGCATCAGACGCAGATGTCATCGATATGGTGACACGGAAG
CTTCGTAATCCGGGATCAGTTGTAGTTCCCCACTGGACATCTTCGGGGCA
GTTCGTCTGCGCACATCGCATGCGGCAAGTATCTTTCTGGGGTGTGCATA
ATATATGA

Coding sequence (CDS) from alignment at NODE_914_length_16169_cov_4.297612:8434..10491+

>Gcaud3120.t1 ID=Gcaud3120.t1|Name=Gcaud3120.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2058bp|location=Sequence derived from alignment at NODE_914_length_16169_cov_4.297612:8434..10491+ (Gracilaria caudata M_176_S67 male)
ATGGGGGAAGACTCTACTTCTCAATCTCTGAAACCACCCGTCGCCGAACC
AGCACCCATTTCGAAGCCGCAGGCTACTGCAAGGCAGCCTTCTCCAGCGC
AAAAACTTGACGCGACAAAGGCTTCAACTCTCCGGCGACCTGCTTCCACT
AAGCAAACCCTTCCCCCAGAAGATGACCCGCAGTCCGAGCTCAACGTCCT
ACGTCGAGAGGTACGTAAATTACAAGCAGAAGTACGCGATGCAGCGATGC
AAGTGGCTGCCCAGCAGGACGAGATTGTTTCCCTGCGCGAGGCGTTGAGT
GCGGCCGAAGCAGAGGCGGAGGATGCGTTATCTCGTGAATCAAACCTACG
CGTACAACTACAAGCCCAACGCTTGCACCGTCAACGCATTGAAGGCACTA
TGGCCGCTGCCGAAGCTCTTGTGGCGTCTTTGCGTGACATGATTACGGAA
CAGACTTTCGTGCAGGGCCCTTCTTTCGATGATGCACCACAGGGGCCGGT
GGCCTCTGCAGAAAGCGACCTAGACTTGATACTTAGTCGTATATCCGATG
GAGACCATCTCAAGCAGCCATCAGACCTCTCTCAGCTCCAATCGACCGTC
GTCGCAGCTGAAAGTTTCAGAGTCGATCCGGAAGTGATCTCAATCGACAT
GAATGATCTGCAGCCACTCTCACGACCAGCTCATGAAATTGGAGATACCA
CCTCAGTGACACCTTCTGCTACTCCTGTCAGTGAGCAACTGACGACAAAT
AGGCCGGCTTCCTTTCAAGAAGCACCAACCAATGCAGCACCAACCTCTCA
GCAAACTTCAGCCGCAACGCATGCACACCGGTTACAACGACATTCAATGC
CTGCAGTCCCCTCTGACTCCGTTTCAGCAGCCCAGACGGCGCACGCGACA
TCTAACTTGCTGCGTTCTGCATTTGGACAGACTAGTAATGCTTCTCGTCA
GGCGCCCACGATCCGAAGCTCTGGCGTTGAAGCTGTTGAACATCTACCCC
CCGAAGTTGCCCCATTAGGAAAAGGAGATAATGTGATGTTTCGGGCTCAG
AATCCGCAACCTCTTCCGAGCGCGGGGTGTTCTCGGGCTTGCAGCGCTCA
CAGCGGAGAAGTATACGCTCTTGCATCAACCCTCGATGGGAATTGGATTG
CGTCTGGAGGCGATGATAGGGTTGTGAATGTATACAACAGTTCGGGAATG
TCCTGTGCATCCATTTCCGAGAGTCCCCGTTCGATCACAGCGCTGGCATT
CCACCACTCTGTAGATCAAAGCAACGCAGAATTCAATGTTATCTACGCAG
GCAGCAGTGATGGTACAATTCGCAGTTTGAAGAGGCATCCAAGACGCCGA
GGAAAGTGGACTTTGGGCTCTGTCTTCCCCGTGCACACTCAAGCTGTGAG
GCGCATGATCTCTTTGACCTCAACAACGCAAATACTGTCATGCTCAACGG
ATCGCACAATCAAAGTCTCGGACATTGAAAACGCGAAAAGACCATTCACA
GCAGCTGCCTCATCTGCAGTGCTCGACATTGGCATCTTCGAATCACGGAA
CGGACTTTTGGTATCTGGGCATAAAGACGGGTGCATACGTTTGTGGTCGC
TAAAAGACCAAAACACTTGCATTGGAGGATCAAAACTGCATACCAAAGGT
ATTGTTTCTGTTGCCTGTCTGGCGGACGGACACGGTGTCGTTTCTCTAGG
AAGGGATAATGTGATTCGTTTGAGTGATACCAGGATGGACACTGTCGGTG
CAGTTCGGGAGATGGATGGGACGATCGACACCGTCTCAGACTGGCATCGT
TTGTCGGTTACAGGCCAACATGTTTCATGCGGCATGGGACGCCAAGGAGA
TGTGGGTTTCTGGAATGTAGAATCTGGAAAGCTTATGCGTCGTATCACAT
CTCAGGCATCAGCATCAGACGCAGATGTCATCGATATGGTGACACGGAAG
CTTCGTAATCCGGGATCAGTTGTAGTTCCCCACTGGACATCTTCGGGGCA
GTTCGTCTGCGCACATCGCATGCGGCAAGTATCTTTCTGGGGTGTGCATA
ATATATGA