Gcaud3117.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3117.t1
Unique NameGcaud3117.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length130
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_914_length_16169_cov_4.297612contigNODE_914_length_16169_cov_4.297612:3360..3921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3117Gcaud3117Gracilaria caudata M_176_S67 malegeneNODE_914_length_16169_cov_4.297612 3360..3921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3117.t1Gcaud3117.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_914_length_16169_cov_4.297612 3360..3921 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3117.t1.stop1Gcaud3117.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_914_length_16169_cov_4.297612 3360..3362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3117.t1.CDS1Gcaud3117.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_914_length_16169_cov_4.297612 3360..3575 -
Gcaud3117.t1.CDS2Gcaud3117.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_914_length_16169_cov_4.297612 3658..3789 -
Gcaud3117.t1.CDS3Gcaud3117.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_914_length_16169_cov_4.297612 3880..3921 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3117.t1.exon1Gcaud3117.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_914_length_16169_cov_4.297612 3360..3575 -
Gcaud3117.t1.exon2Gcaud3117.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_914_length_16169_cov_4.297612 3658..3789 -
Gcaud3117.t1.exon3Gcaud3117.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_914_length_16169_cov_4.297612 3880..3921 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3117.t1.intron1Gcaud3117.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_914_length_16169_cov_4.297612 3576..3657 -
Gcaud3117.t1.intron2Gcaud3117.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_914_length_16169_cov_4.297612 3790..3879 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3117.t1.start1Gcaud3117.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_914_length_16169_cov_4.297612 3919..3921 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3117.t1 ID=Gcaud3117.t1|Name=Gcaud3117.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=130bp
LFNANVGRSRCEYGVAWAAVAFVVLSITIIWYFLDYCSNIQLPANVEFII
FSWLALWWFVGSITLTATKSSRAPSPSNVPVAFAWMLFLMSLISAYIGSK
GPKTFEYRMSETEGERSYRSYDDGSSYRA*
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spliced messenger RNA

>Gcaud3117.t1 ID=Gcaud3117.t1|Name=Gcaud3117.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=390bp|location=Sequence derived from alignment at NODE_914_length_16169_cov_4.297612:3360..3921- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTTCAACGCGAATGTGGGTCGAAGTCGATGTGAATACGGTGTGGCTTG
GGCTGCGGTGGCGTTTGTGGTGCTGTCCATCACCATCATATGGTACTTTC
TAGACTATTGCTCCAACATTCAATTACCGGCCAACGTGGAGTTTATCATT
TTCTCGTGGCTCGCTCTGTGGTGGTTTGTGGGTAGCATCACTCTGACGGC
CACAAAGTCATCAAGAGCACCCTCACCCTCAAACGTACCCGTAGCGTTCG
CATGGATGTTATTCCTCATGAGTTTAATCTCCGCATACATCGGAAGCAAA
GGTCCAAAGACGTTTGAATACCGCATGTCCGAAACCGAAGGCGAACGATC
ATATCGCTCGTACGACGACGGCTCCTCGTATCGCGCGTGA
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protein sequence of Gcaud3117.t1

>Gcaud3117.t1 ID=Gcaud3117.t1|Name=Gcaud3117.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=130bp
LFNANVGRSRCEYGVAWAAVAFVVLSITIIWYFLDYCSNIQLPANVEFII
FSWLALWWFVGSITLTATKSSRAPSPSNVPVAFAWMLFLMSLISAYIGSK
GPKTFEYRMSETEGERSYRSYDDGSSYRA*
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mRNA from alignment at NODE_914_length_16169_cov_4.297612:3360..3921-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3117.t1 ID=Gcaud3117.t1|Name=Gcaud3117.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=562bp|location=Sequence derived from alignment at NODE_914_length_16169_cov_4.297612:3360..3921- (Gracilaria caudata M_176_S67 male)
CTGTTCAACGCGAATGTGGGTCGAAGTCGATGTGAATACGGTGTACGTTG
CTTTTTTTTCTTTTGGTAACATTACAAAGCACAACTCGCATATGAGAAAC
TAACCAAAACACCTGGTGCATGCATAAAACAGGTGGCTTGGGCTGCGGTG
GCGTTTGTGGTGCTGTCCATCACCATCATATGGTACTTTCTAGACTATTG
CTCCAACATTCAATTACCGGCCAACGTGGAGTTTATCATTTTCTCGTGGC
TCGCTCTGTGGTGGGTAAGTGCAGCAACAACATTTAAAAGACACAAAAAA
AGCACGCATACTGACCGAGAAACATGACACAACACTCAAAACACAGTTTG
TGGGTAGCATCACTCTGACGGCCACAAAGTCATCAAGAGCACCCTCACCC
TCAAACGTACCCGTAGCGTTCGCATGGATGTTATTCCTCATGAGTTTAAT
CTCCGCATACATCGGAAGCAAAGGTCCAAAGACGTTTGAATACCGCATGT
CCGAAACCGAAGGCGAACGATCATATCGCTCGTACGACGACGGCTCCTCG
TATCGCGCGTGA
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Coding sequence (CDS) from alignment at NODE_914_length_16169_cov_4.297612:3360..3921-

>Gcaud3117.t1 ID=Gcaud3117.t1|Name=Gcaud3117.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=390bp|location=Sequence derived from alignment at NODE_914_length_16169_cov_4.297612:3360..3921- (Gracilaria caudata M_176_S67 male)
CTGTTCAACGCGAATGTGGGTCGAAGTCGATGTGAATACGGTGTGGCTTG
GGCTGCGGTGGCGTTTGTGGTGCTGTCCATCACCATCATATGGTACTTTC
TAGACTATTGCTCCAACATTCAATTACCGGCCAACGTGGAGTTTATCATT
TTCTCGTGGCTCGCTCTGTGGTGGTTTGTGGGTAGCATCACTCTGACGGC
CACAAAGTCATCAAGAGCACCCTCACCCTCAAACGTACCCGTAGCGTTCG
CATGGATGTTATTCCTCATGAGTTTAATCTCCGCATACATCGGAAGCAAA
GGTCCAAAGACGTTTGAATACCGCATGTCCGAAACCGAAGGCGAACGATC
ATATCGCTCGTACGACGACGGCTCCTCGTATCGCGCGTGA
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