Gcaud3114.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3114.t1
Unique Name	Gcaud3114.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	660

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_478_length_24326_cov_5.271673	contig	NODE_478_length_24326_cov_5.271673:14322..16301 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704317.1
PFAMs	Lipase_3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13806
KEGG Pathway	ko04723,ko04745,ko04925,map04723,map04745,map04925
Evalue	4.39e-34
EggNOG OGs	KOG2088@1\|root,KOG2088@2759\|Eukaryota
Description	retrograde trans-synaptic signaling by lipid
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3114	Gcaud3114	Gracilaria caudata M_176_S67 male	gene	NODE_478_length_24326_cov_5.271673 14322..16301 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3114.t1.start1	Gcaud3114.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_478_length_24326_cov_5.271673 14322..14324 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3114.t1.CDS1	Gcaud3114.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_478_length_24326_cov_5.271673 14322..16301 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3114.t1.exon1	Gcaud3114.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_478_length_24326_cov_5.271673 14322..16301 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3114.t1.stop1	Gcaud3114.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_478_length_24326_cov_5.271673 16299..16301 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3114.t1	Gcaud3114.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_478_length_24326_cov_5.271673 14322..16301 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_478_length_24326_cov_5.271673:14322..16301+
coding sequence from alignment at NODE_478_length_24326_cov_5.271673:14322..16301+

mRNA sequence

>Gcaud3114.t1 ID=Gcaud3114.t1|Name=Gcaud3114.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp
LDSSNPSDTPSSSQSHPSSHEPVPSNSLHRIPSLQADYDSLDAHDPLVKV
KWLPSLPFMGISPRDPSDPCYRALAKLNIMKSQHGIENVSLHDFFLAVAI
FTSMVNRHARKAMKRSRCTPASVITSKERSSAGPSQSFHNLDAQRLQLPE
RDPSGTGTSLFHEFDAHRLHISGRSTIPESSSPRRRSLSLHHFHALENDG
TSGEQKRRWSLPEMTHQVQPDFLFGMFSAGSTAIPQHPEWRPHELSSFVH
TPPEVRPEHVQLMHHMLRHAESIYGLPLNVPSAPRVSLTNLTDRRIVCAR
TGVHQSDLVHTVFETQPFMPAHYVAVDRQIKAVVVCIRGTANFLDLLTDM
AATTDPLRIRRERSPTQRNDIVEGFGHAGIVRSARNVFSRIRDVTLRSLR
ANQGFELLVTGHSLGAATASILALIMRDDPSFPRATAVCIAPPPCMTVEL
AEETASNTITLVNGPDIVPRLSVAVLIPFFATAQYVSSLHPAQKAMLSMG
LKTAVIDWKKLYKHNRERVPEMRKHHEGRRLYIPGKVFQLVRRKGIKTAD
SARTRLFRRHKVKVVPVSRVSFSQMPERERGMFLSHAPFNYKVSLLLALK
EMGSSPLRVMTAGSVLSNIFNLPVVSKLKTDLHDRRRGAESLDGLLRKLT
QDGSESPVP*

spliced messenger RNA

>Gcaud3114.t1 ID=Gcaud3114.t1|Name=Gcaud3114.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:14322..16301+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGACAGCTCGAATCCATCCGATACGCCTTCATCGTCCCAATCACACCC
ATCGTCGCATGAGCCTGTTCCAAGCAATTCATTGCATCGCATCCCTTCGC
TGCAGGCAGACTATGATTCCTTGGATGCACATGACCCTTTAGTCAAAGTT
AAATGGCTCCCATCTCTCCCATTCATGGGAATCAGCCCCCGAGACCCCAG
TGACCCTTGTTACAGAGCTCTTGCGAAGCTAAATATTATGAAGTCGCAGC
ATGGCATTGAGAATGTCAGCCTGCACGATTTCTTTCTCGCTGTTGCGATT
TTTACGTCAATGGTGAACCGACATGCTAGAAAAGCTATGAAGCGTTCTCG
CTGTACGCCTGCATCCGTTATCACCTCAAAAGAGAGAAGCAGTGCAGGAC
CTAGTCAATCATTCCACAACTTGGATGCCCAGCGGCTGCAGTTGCCGGAG
AGAGATCCCAGTGGAACTGGCACAAGCCTGTTTCATGAATTTGATGCTCA
TCGACTTCATATATCAGGGAGAAGCACAATCCCGGAGTCTTCAAGTCCAC
GTCGACGCTCTCTGTCACTCCACCACTTTCATGCGCTGGAAAACGACGGA
ACTTCTGGAGAACAAAAACGGCGATGGTCTTTACCCGAAATGACTCATCA
AGTTCAACCAGATTTTCTTTTCGGAATGTTTTCTGCAGGAAGCACAGCCA
TACCTCAGCATCCAGAGTGGCGTCCACATGAACTAAGTTCTTTTGTGCAT
ACGCCTCCGGAGGTTCGACCAGAGCATGTACAACTTATGCATCACATGTT
GCGTCACGCCGAAAGCATCTACGGCTTGCCTCTTAACGTTCCCTCAGCGC
CACGAGTTTCTCTCACAAACCTGACGGATCGTCGTATCGTGTGTGCAAGG
ACTGGAGTTCATCAATCCGATTTGGTGCACACCGTGTTCGAAACTCAGCC
TTTCATGCCTGCACACTATGTTGCAGTAGATCGACAGATAAAGGCTGTAG
TGGTCTGTATAAGAGGTACAGCAAACTTTCTTGATCTTCTCACAGATATG
GCGGCCACCACCGATCCCTTGCGAATTCGACGAGAAAGATCTCCTACGCA
GCGGAACGACATTGTAGAAGGCTTTGGGCATGCCGGTATAGTCAGAAGCG
CACGTAATGTATTCAGCAGAATACGTGATGTGACTCTACGTTCCCTTCGC
GCCAATCAGGGGTTCGAATTGCTTGTCACGGGACATTCTCTTGGAGCAGC
CACAGCATCCATTCTTGCACTTATAATGCGCGATGATCCTTCATTTCCTC
GCGCGACAGCAGTGTGCATAGCCCCTCCTCCATGTATGACAGTGGAACTC
GCAGAAGAAACAGCTTCAAATACTATCACTCTTGTGAATGGGCCGGATAT
TGTGCCAAGACTCAGTGTTGCGGTTCTAATACCTTTTTTCGCCACCGCAC
AATATGTATCTTCGTTACACCCTGCCCAAAAGGCGATGCTCAGCATGGGC
CTAAAGACCGCTGTAATCGATTGGAAAAAGCTGTACAAACACAATCGAGA
GAGAGTTCCAGAGATGAGGAAGCATCATGAAGGACGAAGACTGTATATTC
CAGGGAAAGTTTTCCAACTCGTTCGAAGAAAAGGTATTAAAACGGCTGAC
TCGGCAAGAACGCGACTGTTTCGGCGGCATAAAGTGAAGGTAGTCCCAGT
TTCACGCGTATCATTTAGTCAGATGCCAGAGAGAGAACGCGGGATGTTCC
TTTCACATGCTCCGTTTAACTATAAGGTTAGCCTGTTGCTTGCCTTGAAA
GAAATGGGATCTAGTCCTCTGCGGGTAATGACCGCTGGGTCCGTACTGAG
CAATATATTTAATTTGCCTGTGGTGTCCAAGCTTAAGACGGATCTCCACG
ATCGCCGCAGGGGTGCCGAGTCTTTAGATGGATTGTTACGGAAGTTAACG
CAAGATGGATCCGAATCTCCTGTTCCGTGA

protein sequence of Gcaud3114.t1

>Gcaud3114.t1 ID=Gcaud3114.t1|Name=Gcaud3114.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=660bp
LDSSNPSDTPSSSQSHPSSHEPVPSNSLHRIPSLQADYDSLDAHDPLVKV
KWLPSLPFMGISPRDPSDPCYRALAKLNIMKSQHGIENVSLHDFFLAVAI
FTSMVNRHARKAMKRSRCTPASVITSKERSSAGPSQSFHNLDAQRLQLPE
RDPSGTGTSLFHEFDAHRLHISGRSTIPESSSPRRRSLSLHHFHALENDG
TSGEQKRRWSLPEMTHQVQPDFLFGMFSAGSTAIPQHPEWRPHELSSFVH
TPPEVRPEHVQLMHHMLRHAESIYGLPLNVPSAPRVSLTNLTDRRIVCAR
TGVHQSDLVHTVFETQPFMPAHYVAVDRQIKAVVVCIRGTANFLDLLTDM
AATTDPLRIRRERSPTQRNDIVEGFGHAGIVRSARNVFSRIRDVTLRSLR
ANQGFELLVTGHSLGAATASILALIMRDDPSFPRATAVCIAPPPCMTVEL
AEETASNTITLVNGPDIVPRLSVAVLIPFFATAQYVSSLHPAQKAMLSMG
LKTAVIDWKKLYKHNRERVPEMRKHHEGRRLYIPGKVFQLVRRKGIKTAD
SARTRLFRRHKVKVVPVSRVSFSQMPERERGMFLSHAPFNYKVSLLLALK
EMGSSPLRVMTAGSVLSNIFNLPVVSKLKTDLHDRRRGAESLDGLLRKLT
QDGSESPVP*

mRNA from alignment at NODE_478_length_24326_cov_5.271673:14322..16301+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3114.t1 ID=Gcaud3114.t1|Name=Gcaud3114.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:14322..16301+ (Gracilaria caudata M_176_S67 male)
CTGGACAGCTCGAATCCATCCGATACGCCTTCATCGTCCCAATCACACCC
ATCGTCGCATGAGCCTGTTCCAAGCAATTCATTGCATCGCATCCCTTCGC
TGCAGGCAGACTATGATTCCTTGGATGCACATGACCCTTTAGTCAAAGTT
AAATGGCTCCCATCTCTCCCATTCATGGGAATCAGCCCCCGAGACCCCAG
TGACCCTTGTTACAGAGCTCTTGCGAAGCTAAATATTATGAAGTCGCAGC
ATGGCATTGAGAATGTCAGCCTGCACGATTTCTTTCTCGCTGTTGCGATT
TTTACGTCAATGGTGAACCGACATGCTAGAAAAGCTATGAAGCGTTCTCG
CTGTACGCCTGCATCCGTTATCACCTCAAAAGAGAGAAGCAGTGCAGGAC
CTAGTCAATCATTCCACAACTTGGATGCCCAGCGGCTGCAGTTGCCGGAG
AGAGATCCCAGTGGAACTGGCACAAGCCTGTTTCATGAATTTGATGCTCA
TCGACTTCATATATCAGGGAGAAGCACAATCCCGGAGTCTTCAAGTCCAC
GTCGACGCTCTCTGTCACTCCACCACTTTCATGCGCTGGAAAACGACGGA
ACTTCTGGAGAACAAAAACGGCGATGGTCTTTACCCGAAATGACTCATCA
AGTTCAACCAGATTTTCTTTTCGGAATGTTTTCTGCAGGAAGCACAGCCA
TACCTCAGCATCCAGAGTGGCGTCCACATGAACTAAGTTCTTTTGTGCAT
ACGCCTCCGGAGGTTCGACCAGAGCATGTACAACTTATGCATCACATGTT
GCGTCACGCCGAAAGCATCTACGGCTTGCCTCTTAACGTTCCCTCAGCGC
CACGAGTTTCTCTCACAAACCTGACGGATCGTCGTATCGTGTGTGCAAGG
ACTGGAGTTCATCAATCCGATTTGGTGCACACCGTGTTCGAAACTCAGCC
TTTCATGCCTGCACACTATGTTGCAGTAGATCGACAGATAAAGGCTGTAG
TGGTCTGTATAAGAGGTACAGCAAACTTTCTTGATCTTCTCACAGATATG
GCGGCCACCACCGATCCCTTGCGAATTCGACGAGAAAGATCTCCTACGCA
GCGGAACGACATTGTAGAAGGCTTTGGGCATGCCGGTATAGTCAGAAGCG
CACGTAATGTATTCAGCAGAATACGTGATGTGACTCTACGTTCCCTTCGC
GCCAATCAGGGGTTCGAATTGCTTGTCACGGGACATTCTCTTGGAGCAGC
CACAGCATCCATTCTTGCACTTATAATGCGCGATGATCCTTCATTTCCTC
GCGCGACAGCAGTGTGCATAGCCCCTCCTCCATGTATGACAGTGGAACTC
GCAGAAGAAACAGCTTCAAATACTATCACTCTTGTGAATGGGCCGGATAT
TGTGCCAAGACTCAGTGTTGCGGTTCTAATACCTTTTTTCGCCACCGCAC
AATATGTATCTTCGTTACACCCTGCCCAAAAGGCGATGCTCAGCATGGGC
CTAAAGACCGCTGTAATCGATTGGAAAAAGCTGTACAAACACAATCGAGA
GAGAGTTCCAGAGATGAGGAAGCATCATGAAGGACGAAGACTGTATATTC
CAGGGAAAGTTTTCCAACTCGTTCGAAGAAAAGGTATTAAAACGGCTGAC
TCGGCAAGAACGCGACTGTTTCGGCGGCATAAAGTGAAGGTAGTCCCAGT
TTCACGCGTATCATTTAGTCAGATGCCAGAGAGAGAACGCGGGATGTTCC
TTTCACATGCTCCGTTTAACTATAAGGTTAGCCTGTTGCTTGCCTTGAAA
GAAATGGGATCTAGTCCTCTGCGGGTAATGACCGCTGGGTCCGTACTGAG
CAATATATTTAATTTGCCTGTGGTGTCCAAGCTTAAGACGGATCTCCACG
ATCGCCGCAGGGGTGCCGAGTCTTTAGATGGATTGTTACGGAAGTTAACG
CAAGATGGATCCGAATCTCCTGTTCCGTGA

Coding sequence (CDS) from alignment at NODE_478_length_24326_cov_5.271673:14322..16301+

>Gcaud3114.t1 ID=Gcaud3114.t1|Name=Gcaud3114.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1980bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:14322..16301+ (Gracilaria caudata M_176_S67 male)
CTGGACAGCTCGAATCCATCCGATACGCCTTCATCGTCCCAATCACACCC
ATCGTCGCATGAGCCTGTTCCAAGCAATTCATTGCATCGCATCCCTTCGC
TGCAGGCAGACTATGATTCCTTGGATGCACATGACCCTTTAGTCAAAGTT
AAATGGCTCCCATCTCTCCCATTCATGGGAATCAGCCCCCGAGACCCCAG
TGACCCTTGTTACAGAGCTCTTGCGAAGCTAAATATTATGAAGTCGCAGC
ATGGCATTGAGAATGTCAGCCTGCACGATTTCTTTCTCGCTGTTGCGATT
TTTACGTCAATGGTGAACCGACATGCTAGAAAAGCTATGAAGCGTTCTCG
CTGTACGCCTGCATCCGTTATCACCTCAAAAGAGAGAAGCAGTGCAGGAC
CTAGTCAATCATTCCACAACTTGGATGCCCAGCGGCTGCAGTTGCCGGAG
AGAGATCCCAGTGGAACTGGCACAAGCCTGTTTCATGAATTTGATGCTCA
TCGACTTCATATATCAGGGAGAAGCACAATCCCGGAGTCTTCAAGTCCAC
GTCGACGCTCTCTGTCACTCCACCACTTTCATGCGCTGGAAAACGACGGA
ACTTCTGGAGAACAAAAACGGCGATGGTCTTTACCCGAAATGACTCATCA
AGTTCAACCAGATTTTCTTTTCGGAATGTTTTCTGCAGGAAGCACAGCCA
TACCTCAGCATCCAGAGTGGCGTCCACATGAACTAAGTTCTTTTGTGCAT
ACGCCTCCGGAGGTTCGACCAGAGCATGTACAACTTATGCATCACATGTT
GCGTCACGCCGAAAGCATCTACGGCTTGCCTCTTAACGTTCCCTCAGCGC
CACGAGTTTCTCTCACAAACCTGACGGATCGTCGTATCGTGTGTGCAAGG
ACTGGAGTTCATCAATCCGATTTGGTGCACACCGTGTTCGAAACTCAGCC
TTTCATGCCTGCACACTATGTTGCAGTAGATCGACAGATAAAGGCTGTAG
TGGTCTGTATAAGAGGTACAGCAAACTTTCTTGATCTTCTCACAGATATG
GCGGCCACCACCGATCCCTTGCGAATTCGACGAGAAAGATCTCCTACGCA
GCGGAACGACATTGTAGAAGGCTTTGGGCATGCCGGTATAGTCAGAAGCG
CACGTAATGTATTCAGCAGAATACGTGATGTGACTCTACGTTCCCTTCGC
GCCAATCAGGGGTTCGAATTGCTTGTCACGGGACATTCTCTTGGAGCAGC
CACAGCATCCATTCTTGCACTTATAATGCGCGATGATCCTTCATTTCCTC
GCGCGACAGCAGTGTGCATAGCCCCTCCTCCATGTATGACAGTGGAACTC
GCAGAAGAAACAGCTTCAAATACTATCACTCTTGTGAATGGGCCGGATAT
TGTGCCAAGACTCAGTGTTGCGGTTCTAATACCTTTTTTCGCCACCGCAC
AATATGTATCTTCGTTACACCCTGCCCAAAAGGCGATGCTCAGCATGGGC
CTAAAGACCGCTGTAATCGATTGGAAAAAGCTGTACAAACACAATCGAGA
GAGAGTTCCAGAGATGAGGAAGCATCATGAAGGACGAAGACTGTATATTC
CAGGGAAAGTTTTCCAACTCGTTCGAAGAAAAGGTATTAAAACGGCTGAC
TCGGCAAGAACGCGACTGTTTCGGCGGCATAAAGTGAAGGTAGTCCCAGT
TTCACGCGTATCATTTAGTCAGATGCCAGAGAGAGAACGCGGGATGTTCC
TTTCACATGCTCCGTTTAACTATAAGGTTAGCCTGTTGCTTGCCTTGAAA
GAAATGGGATCTAGTCCTCTGCGGGTAATGACCGCTGGGTCCGTACTGAG
CAATATATTTAATTTGCCTGTGGTGTCCAAGCTTAAGACGGATCTCCACG
ATCGCCGCAGGGGTGCCGAGTCTTTAGATGGATTGTTACGGAAGTTAACG
CAAGATGGATCCGAATCTCCTGTTCCGTGA