Gcaud3111.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3111.t1
Unique NameGcaud3111.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length121
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_478_length_24326_cov_5.271673contigNODE_478_length_24326_cov_5.271673:7008..7370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708536.1
Preferred nameRPL35
PFAMsRibosomal_L29
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00482
KEGG koko:K02918,ko:K07151,ko:K20184
KEGG ReactionR04216,R05976
KEGG Pathwayko00510,ko00513,ko01100,ko03010,ko04138,ko04141,map00510,map00513,map01100,map03010,map04138,map04141
KEGG ModuleM00072,M00177
GOsGO:0000184,GO:0000463,GO:0000470,GO:0000956,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009506,GO:0009628,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010224,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030684,GO:0030687,GO:0030867,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034470,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042254,GO:0042273,GO:0042592,GO:0042886,GO:0043009,GO:0043021,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0055044,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071214,GO:0071478,GO:0071482,GO:0071493,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:0104004,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue5.2e-40
EggNOG OGsCOG0255@1|root,KOG3436@2759|Eukaryota
EC2.4.99.18
Descriptionribosomal protein
COG categoryJ
CAZyGT66
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01003,ko03011,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3111Gcaud3111Gracilaria caudata M_176_S67 malegeneNODE_478_length_24326_cov_5.271673 7008..7370 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3111.t1.stop1Gcaud3111.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_478_length_24326_cov_5.271673 7008..7010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3111.t1.CDS1Gcaud3111.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_478_length_24326_cov_5.271673 7008..7370 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3111.t1.exon1Gcaud3111.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_478_length_24326_cov_5.271673 7008..7370 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3111.t1.start1Gcaud3111.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_478_length_24326_cov_5.271673 7368..7370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3111.t1Gcaud3111.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_478_length_24326_cov_5.271673 7008..7370 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3111.t1 ID=Gcaud3111.t1|Name=Gcaud3111.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=121bp
MKTSELRTKTKADLEKEAEDLRVELGQLRVAKVTGGPASKLSKIREVRKC
IARVLTVLTAQKREALKDHYKDKRYKPLDLRPKKTRAIRRRLTKEQLAKK
TLRAQKMEKAFPKRKYAVRA*
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spliced messenger RNA

>Gcaud3111.t1 ID=Gcaud3111.t1|Name=Gcaud3111.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=363bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:7008..7370- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACCAGTGAGCTCCGAACGAAGACCAAGGCAGACCTTGAGAAAGA
GGCCGAGGATCTCCGTGTCGAACTCGGTCAACTGCGAGTCGCCAAGGTGA
CTGGTGGACCGGCGTCAAAGCTATCGAAGATTCGTGAAGTTCGTAAATGT
ATTGCCCGCGTGCTGACGGTTCTAACCGCCCAGAAGAGGGAGGCTTTGAA
GGATCACTACAAGGATAAGCGATACAAGCCGCTGGATCTCCGTCCGAAAA
AGACTCGCGCTATCCGCCGACGACTGACGAAGGAGCAATTGGCTAAGAAA
ACACTGAGAGCACAGAAGATGGAGAAAGCTTTTCCGAAGCGCAAGTACGC
TGTTAGAGCATGA
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protein sequence of Gcaud3111.t1

>Gcaud3111.t1 ID=Gcaud3111.t1|Name=Gcaud3111.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=121bp
MKTSELRTKTKADLEKEAEDLRVELGQLRVAKVTGGPASKLSKIREVRKC
IARVLTVLTAQKREALKDHYKDKRYKPLDLRPKKTRAIRRRLTKEQLAKK
TLRAQKMEKAFPKRKYAVRA*
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mRNA from alignment at NODE_478_length_24326_cov_5.271673:7008..7370-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3111.t1 ID=Gcaud3111.t1|Name=Gcaud3111.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=363bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:7008..7370- (Gracilaria caudata M_176_S67 male)
ATGAAAACCAGTGAGCTCCGAACGAAGACCAAGGCAGACCTTGAGAAAGA
GGCCGAGGATCTCCGTGTCGAACTCGGTCAACTGCGAGTCGCCAAGGTGA
CTGGTGGACCGGCGTCAAAGCTATCGAAGATTCGTGAAGTTCGTAAATGT
ATTGCCCGCGTGCTGACGGTTCTAACCGCCCAGAAGAGGGAGGCTTTGAA
GGATCACTACAAGGATAAGCGATACAAGCCGCTGGATCTCCGTCCGAAAA
AGACTCGCGCTATCCGCCGACGACTGACGAAGGAGCAATTGGCTAAGAAA
ACACTGAGAGCACAGAAGATGGAGAAAGCTTTTCCGAAGCGCAAGTACGC
TGTTAGAGCATGA
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Coding sequence (CDS) from alignment at NODE_478_length_24326_cov_5.271673:7008..7370-

>Gcaud3111.t1 ID=Gcaud3111.t1|Name=Gcaud3111.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=363bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:7008..7370- (Gracilaria caudata M_176_S67 male)
ATGAAAACCAGTGAGCTCCGAACGAAGACCAAGGCAGACCTTGAGAAAGA
GGCCGAGGATCTCCGTGTCGAACTCGGTCAACTGCGAGTCGCCAAGGTGA
CTGGTGGACCGGCGTCAAAGCTATCGAAGATTCGTGAAGTTCGTAAATGT
ATTGCCCGCGTGCTGACGGTTCTAACCGCCCAGAAGAGGGAGGCTTTGAA
GGATCACTACAAGGATAAGCGATACAAGCCGCTGGATCTCCGTCCGAAAA
AGACTCGCGCTATCCGCCGACGACTGACGAAGGAGCAATTGGCTAAGAAA
ACACTGAGAGCACAGAAGATGGAGAAAGCTTTTCCGAAGCGCAAGTACGC
TGTTAGAGCATGA
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