Gcaud3110.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3110.t1
Unique NameGcaud3110.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length433
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_478_length_24326_cov_5.271673contigNODE_478_length_24326_cov_5.271673:5313..6709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708192.1
Preferred nameCCBL2
PFAMsAminotran_1_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC01210,RC01245
KEGG koko:K00816,ko:K09142,ko:K14264
KEGG ReactionR01956,R04171,R09366,R09373
KEGG Pathwayko00380,ko00450,ko01100,ko05204,map00380,map00450,map01100,map05204
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006090,GO:0006103,GO:0006520,GO:0006558,GO:0006559,GO:0006568,GO:0006569,GO:0006575,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016053,GO:0016054,GO:0016212,GO:0016740,GO:0016769,GO:0016829,GO:0016846,GO:0017144,GO:0019439,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0034641,GO:0036137,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0042737,GO:0042802,GO:0042803,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046218,GO:0046394,GO:0046395,GO:0046483,GO:0046700,GO:0046983,GO:0047312,GO:0047315,GO:0047316,GO:0047804,GO:0047945,GO:0050896,GO:0051186,GO:0051704,GO:0051707,GO:0070013,GO:0070189,GO:0070546,GO:0070548,GO:0071704,GO:0097052,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1902221,GO:1902222
Evalue2.19e-116
EggNOG OGsCOG0436@1|root,KOG0257@2759|Eukaryota
EC2.6.1.64,2.6.1.7,4.4.1.13
Descriptiontransferase activity, transferring nitrogenous groups
COG categoryE
BRITEko00000,ko00001,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3110Gcaud3110Gracilaria caudata M_176_S67 malegeneNODE_478_length_24326_cov_5.271673 5313..6709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3110.t1Gcaud3110.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_478_length_24326_cov_5.271673 5313..6709 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3110.t1.start1Gcaud3110.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_478_length_24326_cov_5.271673 5313..5315 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3110.t1.CDS1Gcaud3110.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_478_length_24326_cov_5.271673 5313..5388 +
Gcaud3110.t1.CDS2Gcaud3110.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_478_length_24326_cov_5.271673 5487..6709 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3110.t1.exon1Gcaud3110.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_478_length_24326_cov_5.271673 5313..5388 +
Gcaud3110.t1.exon2Gcaud3110.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_478_length_24326_cov_5.271673 5487..6709 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3110.t1.intron1Gcaud3110.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_478_length_24326_cov_5.271673 5389..5486 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3110.t1.stop1Gcaud3110.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_478_length_24326_cov_5.271673 6707..6709 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3110.t1 ID=Gcaud3110.t1|Name=Gcaud3110.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=433bp
MLPFGGPSVWLEFTPLSKLASSINLGQGAPGWASPAFVKDALVKAAQEDS
YCQYSRSSGVLALVEEISRMYTPKLLPPTLQSRGIDPLKQVLVTVGASQA
LSLACNSLLQEGDEALLIEPAFDIYTAAVRTAGAEPVYIPLRVKGNHLSS
ANDFVLDLEELSNAITDKTRMLILNSPHNPTGKVFSREELKGILDILETK
APSCIVLSDEVYEHLVFSGEHIPFASVSESAFERTLSIYSIGKTFSATGM
KLGWMVGPHNLLRDSQILQQYMVFCVNHSSQAAAAEMLQFAQSPYKGFGT
YFEWLCDMYRNKRDFLIEAIRSAGMEPIVPQGAFYICARVPDGHPIKREK
GLPDEIRKLVEQGKLQIDQGTVDRTDYNMSRTLVAKKRVTTIPISAFFKP
EHVGKSDLSKDFIRFAFCHPDEVLSEASRRLR*
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spliced messenger RNA

>Gcaud3110.t1 ID=Gcaud3110.t1|Name=Gcaud3110.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:5313..6709+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCGTTTGGAGGTCCTTCAGTTTGGCTAGAATTTACTCCTCTTTC
GAAACTTGCATCAAGTATTAACTTAGGTCAAGGAGCTCCAGGATGGGCCT
CTCCCGCTTTTGTCAAAGATGCTTTGGTGAAGGCAGCCCAGGAGGATTCA
TATTGCCAATACTCTCGTTCTTCCGGAGTGCTTGCGCTCGTTGAAGAAAT
CTCGCGCATGTACACACCCAAGTTGCTACCTCCAACTTTGCAGTCACGTG
GGATAGATCCCCTTAAACAAGTTCTCGTCACAGTTGGTGCATCTCAAGCT
CTAAGCTTGGCATGCAACTCCTTGCTACAAGAAGGTGATGAAGCTCTTCT
CATAGAACCCGCATTCGACATCTACACAGCCGCCGTGCGTACGGCAGGAG
CTGAGCCAGTGTACATTCCGCTTCGGGTGAAAGGAAATCATCTGTCATCC
GCAAACGACTTTGTTCTTGACCTAGAGGAATTATCGAACGCTATCACTGA
CAAAACTCGGATGCTGATCCTTAACTCCCCTCACAACCCCACAGGCAAAG
TATTTTCACGTGAAGAACTAAAGGGGATATTGGATATATTAGAAACCAAA
GCTCCCTCTTGTATTGTACTGTCAGATGAAGTGTACGAGCATCTGGTGTT
CAGTGGTGAGCATATTCCCTTCGCATCGGTGTCTGAGAGTGCATTCGAGC
GTACTCTTAGCATCTACAGTATTGGAAAGACTTTCAGTGCGACCGGAATG
AAACTCGGTTGGATGGTAGGTCCTCACAATCTCCTCAGAGATTCTCAAAT
TCTTCAGCAGTACATGGTCTTTTGTGTGAATCATTCAAGTCAGGCTGCGG
CTGCTGAAATGCTCCAGTTCGCTCAAAGTCCGTACAAGGGATTTGGCACC
TACTTCGAATGGTTGTGTGACATGTATAGAAACAAACGCGATTTCTTAAT
AGAAGCAATTCGCAGCGCCGGAATGGAACCAATTGTGCCGCAGGGGGCCT
TTTACATCTGCGCAAGAGTGCCAGATGGACATCCAATCAAGAGAGAGAAA
GGTTTGCCCGATGAGATTCGCAAACTGGTAGAGCAAGGAAAACTGCAAAT
CGATCAAGGGACGGTAGACCGAACGGATTACAATATGTCTCGTACGTTGG
TAGCAAAGAAGAGAGTTACCACAATCCCAATATCAGCGTTCTTCAAGCCT
GAGCATGTTGGAAAAAGCGATCTTTCGAAAGACTTTATTCGTTTCGCATT
TTGTCATCCAGATGAGGTTCTTTCTGAGGCTTCCAGGCGACTTCGGTAA
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protein sequence of Gcaud3110.t1

>Gcaud3110.t1 ID=Gcaud3110.t1|Name=Gcaud3110.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=433bp
MLPFGGPSVWLEFTPLSKLASSINLGQGAPGWASPAFVKDALVKAAQEDS
YCQYSRSSGVLALVEEISRMYTPKLLPPTLQSRGIDPLKQVLVTVGASQA
LSLACNSLLQEGDEALLIEPAFDIYTAAVRTAGAEPVYIPLRVKGNHLSS
ANDFVLDLEELSNAITDKTRMLILNSPHNPTGKVFSREELKGILDILETK
APSCIVLSDEVYEHLVFSGEHIPFASVSESAFERTLSIYSIGKTFSATGM
KLGWMVGPHNLLRDSQILQQYMVFCVNHSSQAAAAEMLQFAQSPYKGFGT
YFEWLCDMYRNKRDFLIEAIRSAGMEPIVPQGAFYICARVPDGHPIKREK
GLPDEIRKLVEQGKLQIDQGTVDRTDYNMSRTLVAKKRVTTIPISAFFKP
EHVGKSDLSKDFIRFAFCHPDEVLSEASRRLR*
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mRNA from alignment at NODE_478_length_24326_cov_5.271673:5313..6709+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3110.t1 ID=Gcaud3110.t1|Name=Gcaud3110.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1397bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:5313..6709+ (Gracilaria caudata M_176_S67 male)
ATGCTTCCGTTTGGAGGTCCTTCAGTTTGGCTAGAATTTACTCCTCTTTC
GAAACTTGCATCAAGTATTAACTTAGGTGAGTCTTTGCGTAACATGGCTG
ATATCTAGCGCACTCTGATGTACATTCGAAAGCATGTCTAACACGCAAGG
CCATATCGTGGTACACGAATGTAGGTCAAGGAGCTCCAGGATGGGCCTCT
CCCGCTTTTGTCAAAGATGCTTTGGTGAAGGCAGCCCAGGAGGATTCATA
TTGCCAATACTCTCGTTCTTCCGGAGTGCTTGCGCTCGTTGAAGAAATCT
CGCGCATGTACACACCCAAGTTGCTACCTCCAACTTTGCAGTCACGTGGG
ATAGATCCCCTTAAACAAGTTCTCGTCACAGTTGGTGCATCTCAAGCTCT
AAGCTTGGCATGCAACTCCTTGCTACAAGAAGGTGATGAAGCTCTTCTCA
TAGAACCCGCATTCGACATCTACACAGCCGCCGTGCGTACGGCAGGAGCT
GAGCCAGTGTACATTCCGCTTCGGGTGAAAGGAAATCATCTGTCATCCGC
AAACGACTTTGTTCTTGACCTAGAGGAATTATCGAACGCTATCACTGACA
AAACTCGGATGCTGATCCTTAACTCCCCTCACAACCCCACAGGCAAAGTA
TTTTCACGTGAAGAACTAAAGGGGATATTGGATATATTAGAAACCAAAGC
TCCCTCTTGTATTGTACTGTCAGATGAAGTGTACGAGCATCTGGTGTTCA
GTGGTGAGCATATTCCCTTCGCATCGGTGTCTGAGAGTGCATTCGAGCGT
ACTCTTAGCATCTACAGTATTGGAAAGACTTTCAGTGCGACCGGAATGAA
ACTCGGTTGGATGGTAGGTCCTCACAATCTCCTCAGAGATTCTCAAATTC
TTCAGCAGTACATGGTCTTTTGTGTGAATCATTCAAGTCAGGCTGCGGCT
GCTGAAATGCTCCAGTTCGCTCAAAGTCCGTACAAGGGATTTGGCACCTA
CTTCGAATGGTTGTGTGACATGTATAGAAACAAACGCGATTTCTTAATAG
AAGCAATTCGCAGCGCCGGAATGGAACCAATTGTGCCGCAGGGGGCCTTT
TACATCTGCGCAAGAGTGCCAGATGGACATCCAATCAAGAGAGAGAAAGG
TTTGCCCGATGAGATTCGCAAACTGGTAGAGCAAGGAAAACTGCAAATCG
ATCAAGGGACGGTAGACCGAACGGATTACAATATGTCTCGTACGTTGGTA
GCAAAGAAGAGAGTTACCACAATCCCAATATCAGCGTTCTTCAAGCCTGA
GCATGTTGGAAAAAGCGATCTTTCGAAAGACTTTATTCGTTTCGCATTTT
GTCATCCAGATGAGGTTCTTTCTGAGGCTTCCAGGCGACTTCGGTAA
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Coding sequence (CDS) from alignment at NODE_478_length_24326_cov_5.271673:5313..6709+

>Gcaud3110.t1 ID=Gcaud3110.t1|Name=Gcaud3110.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1299bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:5313..6709+ (Gracilaria caudata M_176_S67 male)
ATGCTTCCGTTTGGAGGTCCTTCAGTTTGGCTAGAATTTACTCCTCTTTC
GAAACTTGCATCAAGTATTAACTTAGGTCAAGGAGCTCCAGGATGGGCCT
CTCCCGCTTTTGTCAAAGATGCTTTGGTGAAGGCAGCCCAGGAGGATTCA
TATTGCCAATACTCTCGTTCTTCCGGAGTGCTTGCGCTCGTTGAAGAAAT
CTCGCGCATGTACACACCCAAGTTGCTACCTCCAACTTTGCAGTCACGTG
GGATAGATCCCCTTAAACAAGTTCTCGTCACAGTTGGTGCATCTCAAGCT
CTAAGCTTGGCATGCAACTCCTTGCTACAAGAAGGTGATGAAGCTCTTCT
CATAGAACCCGCATTCGACATCTACACAGCCGCCGTGCGTACGGCAGGAG
CTGAGCCAGTGTACATTCCGCTTCGGGTGAAAGGAAATCATCTGTCATCC
GCAAACGACTTTGTTCTTGACCTAGAGGAATTATCGAACGCTATCACTGA
CAAAACTCGGATGCTGATCCTTAACTCCCCTCACAACCCCACAGGCAAAG
TATTTTCACGTGAAGAACTAAAGGGGATATTGGATATATTAGAAACCAAA
GCTCCCTCTTGTATTGTACTGTCAGATGAAGTGTACGAGCATCTGGTGTT
CAGTGGTGAGCATATTCCCTTCGCATCGGTGTCTGAGAGTGCATTCGAGC
GTACTCTTAGCATCTACAGTATTGGAAAGACTTTCAGTGCGACCGGAATG
AAACTCGGTTGGATGGTAGGTCCTCACAATCTCCTCAGAGATTCTCAAAT
TCTTCAGCAGTACATGGTCTTTTGTGTGAATCATTCAAGTCAGGCTGCGG
CTGCTGAAATGCTCCAGTTCGCTCAAAGTCCGTACAAGGGATTTGGCACC
TACTTCGAATGGTTGTGTGACATGTATAGAAACAAACGCGATTTCTTAAT
AGAAGCAATTCGCAGCGCCGGAATGGAACCAATTGTGCCGCAGGGGGCCT
TTTACATCTGCGCAAGAGTGCCAGATGGACATCCAATCAAGAGAGAGAAA
GGTTTGCCCGATGAGATTCGCAAACTGGTAGAGCAAGGAAAACTGCAAAT
CGATCAAGGGACGGTAGACCGAACGGATTACAATATGTCTCGTACGTTGG
TAGCAAAGAAGAGAGTTACCACAATCCCAATATCAGCGTTCTTCAAGCCT
GAGCATGTTGGAAAAAGCGATCTTTCGAAAGACTTTATTCGTTTCGCATT
TTGTCATCCAGATGAGGTTCTTTCTGAGGCTTCCAGGCGACTTCGGTAA
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