Gcaud3108.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3108.t1
Unique Name	Gcaud3108.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	685

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_478_length_24326_cov_5.271673	contig	NODE_478_length_24326_cov_5.271673:625..2679 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	15368.BRADI2G17970.1
PFAMs	DnaJ,DnaJ-X
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K02974
KEGG Pathway	ko03010,map03010
KEGG Module	M00177,M00179
Evalue	1.67e-39
EggNOG OGs	COG2214@1\|root,KOG0691@2759\|Eukaryota,37NRP@33090\|Viridiplantae,3GA6Y@35493\|Streptophyta,3KM4B@4447\|Liliopsida,3IDHQ@38820\|Poales
Description	X-domain of DnaJ-containing
COG category	O
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3108	Gcaud3108	Gracilaria caudata M_176_S67 male	gene	NODE_478_length_24326_cov_5.271673 625..2679 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3108.t1.start1	Gcaud3108.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_478_length_24326_cov_5.271673 625..627 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3108.t1.CDS1	Gcaud3108.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_478_length_24326_cov_5.271673 625..2679 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3108.t1.exon1	Gcaud3108.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_478_length_24326_cov_5.271673 625..2679 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3108.t1.stop1	Gcaud3108.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_478_length_24326_cov_5.271673 2677..2679 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3108.t1	Gcaud3108.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_478_length_24326_cov_5.271673 625..2679 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_478_length_24326_cov_5.271673:625..2679+
coding sequence from alignment at NODE_478_length_24326_cov_5.271673:625..2679+

mRNA sequence

>Gcaud3108.t1 ID=Gcaud3108.t1|Name=Gcaud3108.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=685bp
MAEYSRAIQHYSLVIDAQPPPAAALLLRALVGRSEAHLSDAINTDRPQSF
DAAIADASAAVQLQPSSEHAWYTLGTAHLQNAHPARAKSTFERALQYCPR
AQSLLDGVRDAQFVIDEEGAESDSEMSPTAPASNHSPPQSHNPVATSSDL
SASNPLQAPSRSERSFSLLSQRNRHDLYRSDVDSRSLSSRFRFSKHDARS
SSSERSAQNPTQGESASFSRLAASLSTYDKRTASMASPPIFAKSNSFASA
SASASASASASASASASASASTRAETNASNDAFNTAPTDASSSSISAHSR
KELYEMLQVPRDATEAMIKKSYYQLARKYHPDKNAGDQHATYKFQKLAEA
YRVLSDPESRAVYDRYGDRGLVKNSVNNIDPSTLFAMVFGSDQFVHLIGE
LQLASLATNVDDGGNTPSEEVLNSIQRARVGKLVLEMVKMLKPWVDGDKK
GFLENTNHLMHKLKDASFGPHLLDTVGKVYVQHTTHLLDKNRPFNLSAVV
RKASVRSHKFASHHKALNAANRVMDKQKRLHDRVMRSGRDQKFISEEEAK
KIAVEMAENAIDMMWKISIIDIETTLEDVLLIVLSGRDLVAESDMFSPPL
SSSDSTSSSKPKHRRRIGSYLSRDGREKNDRVRDRDRLDSQLVRALPPLT
HGEPALTRQQVLSERAHGIQTMGRIFMMAHSRQA*

spliced messenger RNA

>Gcaud3108.t1 ID=Gcaud3108.t1|Name=Gcaud3108.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2055bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:625..2679+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGTATTCGCGTGCAATTCAGCACTACTCGCTCGTCATCGATGC
GCAACCGCCGCCCGCCGCCGCGCTGCTGCTGCGCGCGCTCGTGGGACGCA
GTGAAGCGCATCTGTCCGACGCCATTAACACCGATCGACCGCAGTCGTTC
GACGCTGCCATTGCTGATGCCTCCGCGGCCGTGCAGTTGCAGCCCAGCTC
GGAGCATGCGTGGTATACATTGGGCACTGCGCACTTGCAGAATGCGCATC
CGGCGCGCGCAAAGAGTACCTTTGAGCGTGCGCTGCAGTATTGTCCGCGT
GCTCAGTCGCTGTTGGATGGTGTGAGAGATGCGCAGTTTGTAATTGACGA
GGAGGGTGCCGAGTCCGACTCAGAAATGTCGCCCACCGCTCCTGCCTCCA
ATCACTCCCCTCCACAGTCGCACAACCCTGTCGCCACCTCTTCGGACCTT
TCTGCGTCCAACCCGCTGCAAGCTCCTTCTCGGAGTGAGCGAAGTTTTAG
CCTTTTGTCGCAACGGAATCGCCACGACTTGTATCGATCCGATGTGGATT
CGCGTTCGCTGTCTTCTCGTTTCCGTTTTTCGAAGCACGACGCTCGCAGT
TCTTCATCTGAACGCAGTGCGCAGAACCCTACTCAGGGAGAGTCAGCCTC
GTTCAGTCGCCTTGCTGCTTCCCTCTCCACGTACGACAAGCGTACTGCTT
CTATGGCTTCGCCTCCCATCTTTGCCAAGTCCAATTCATTTGcttccgct
tccgcttccgcttccgcttccgcttcggcctccgcctctgcctccgcctc
tgcctccgcttccacaAGAGCAGAGACCAATGCATCCAATGATGCTTTCA
ACACTGCCCCAACAGACGCCTCCAGTTCGTCCATCTCGGCCCATAGCCGA
AAGGAACTGTACGAAATGTTGCAAGTTCCTCGGGATGCCACCGAGGCCAT
GATAAAGAAGAGCTATTATCAGCTGGCTCGCAAATACCACCCAGATAAGA
ACGCCGGTGATCAACATGCCACCTACAAGTTCCAGAAGCTCGCGGAGGCT
TACCGCGTCTTGTCCGACCCCGAATCGCGCGCCGTGTACGATCGCTATGG
AGACCGAGGCCTGGTGAAGAATAGCGTCAATAATATCGACCCATCCACAT
TGTTCGCTATGGTCTTCGGCTCTGACCAGTTCGTCCACCTCATTGGTGAA
TTGCAGCTCGCCAGTCTGGCTACCAATGTGGACGACGGTGGAAACACGCC
TTCGGAAGAGGTGCTCAATAGCATCCAGCGTGCGCGAGTCGGAAAGCTTG
TGCTCGAGATGGTTAAGATGCTCAAGCCCTGGGTCGATGGTGATAAGAAG
GGTTTCCTTGAGAATACAAACCATTTGATGCACAAGCTGAAGGATGCTAG
TTTTGGGCCCCACCTGCTCGACACGGTTGGCAAAGTATATGTGCAGCACA
CCACCCACTTGCTTGACAAGAATCGACCATTCAACCTTTCTGCGGTTGTG
CGCAAGGCGTCGGTGCGATCTCACAAGTTTGCTTCGCATCACAAAGCTCT
CAATGCCGCCAACCGCGTGATGGACAAACAGAAAAGGTTGCACGACAGGG
TCATGCGCTCTGGACGCGACCAAAAGTTCATCTCTGAAGAGGAAGCGAAG
AAAATTGCAGTGGAAATGGCCGAGAATGCCATTGATATGATGTGGAAGAT
CTCCATTATTGATATTGAGACGACCTTGGAAGACGTGCTGTTGATTGTGC
TATCAGGCAGAGATTTGGTTGCTGAGAGTGATATGTTTTCTCCGCCCCTT
TCTTCCTCGGACTCCACATCTTCCTCAAAGCCCAAGCACCGACGGCGAAT
TGGGTCGTACCTCTCTCGAGACGGTAGAGAAAAGAATGACAGGGTTCGCG
ACCGCGATCGCCTGGATTCTCAGTTGGTTCGAGCTTTGCCCCCTCTCACT
CACGGGGAACCAGCGCTCACGAGACAGCAAGTTTTGAGTGAGCGGGCCCA
TGGAATTCAAACAATGGGAAGGATCTTTATGATGGCCCACAGTCGACAAG
CTTGA

protein sequence of Gcaud3108.t1

>Gcaud3108.t1 ID=Gcaud3108.t1|Name=Gcaud3108.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=685bp
MAEYSRAIQHYSLVIDAQPPPAAALLLRALVGRSEAHLSDAINTDRPQSF
DAAIADASAAVQLQPSSEHAWYTLGTAHLQNAHPARAKSTFERALQYCPR
AQSLLDGVRDAQFVIDEEGAESDSEMSPTAPASNHSPPQSHNPVATSSDL
SASNPLQAPSRSERSFSLLSQRNRHDLYRSDVDSRSLSSRFRFSKHDARS
SSSERSAQNPTQGESASFSRLAASLSTYDKRTASMASPPIFAKSNSFASA
SASASASASASASASASASASTRAETNASNDAFNTAPTDASSSSISAHSR
KELYEMLQVPRDATEAMIKKSYYQLARKYHPDKNAGDQHATYKFQKLAEA
YRVLSDPESRAVYDRYGDRGLVKNSVNNIDPSTLFAMVFGSDQFVHLIGE
LQLASLATNVDDGGNTPSEEVLNSIQRARVGKLVLEMVKMLKPWVDGDKK
GFLENTNHLMHKLKDASFGPHLLDTVGKVYVQHTTHLLDKNRPFNLSAVV
RKASVRSHKFASHHKALNAANRVMDKQKRLHDRVMRSGRDQKFISEEEAK
KIAVEMAENAIDMMWKISIIDIETTLEDVLLIVLSGRDLVAESDMFSPPL
SSSDSTSSSKPKHRRRIGSYLSRDGREKNDRVRDRDRLDSQLVRALPPLT
HGEPALTRQQVLSERAHGIQTMGRIFMMAHSRQA*

mRNA from alignment at NODE_478_length_24326_cov_5.271673:625..2679+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3108.t1 ID=Gcaud3108.t1|Name=Gcaud3108.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2055bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:625..2679+ (Gracilaria caudata M_176_S67 male)
ATGGCCGAGTATTCGCGTGCAATTCAGCACTACTCGCTCGTCATCGATGC
GCAACCGCCGCCCGCCGCCGCGCTGCTGCTGCGCGCGCTCGTGGGACGCA
GTGAAGCGCATCTGTCCGACGCCATTAACACCGATCGACCGCAGTCGTTC
GACGCTGCCATTGCTGATGCCTCCGCGGCCGTGCAGTTGCAGCCCAGCTC
GGAGCATGCGTGGTATACATTGGGCACTGCGCACTTGCAGAATGCGCATC
CGGCGCGCGCAAAGAGTACCTTTGAGCGTGCGCTGCAGTATTGTCCGCGT
GCTCAGTCGCTGTTGGATGGTGTGAGAGATGCGCAGTTTGTAATTGACGA
GGAGGGTGCCGAGTCCGACTCAGAAATGTCGCCCACCGCTCCTGCCTCCA
ATCACTCCCCTCCACAGTCGCACAACCCTGTCGCCACCTCTTCGGACCTT
TCTGCGTCCAACCCGCTGCAAGCTCCTTCTCGGAGTGAGCGAAGTTTTAG
CCTTTTGTCGCAACGGAATCGCCACGACTTGTATCGATCCGATGTGGATT
CGCGTTCGCTGTCTTCTCGTTTCCGTTTTTCGAAGCACGACGCTCGCAGT
TCTTCATCTGAACGCAGTGCGCAGAACCCTACTCAGGGAGAGTCAGCCTC
GTTCAGTCGCCTTGCTGCTTCCCTCTCCACGTACGACAAGCGTACTGCTT
CTATGGCTTCGCCTCCCATCTTTGCCAAGTCCAATTCATTTGcttccgct
tccgcttccgcttccgcttccgcttcggcctccgcctctgcctccgcctc
tgcctccgcttccacaAGAGCAGAGACCAATGCATCCAATGATGCTTTCA
ACACTGCCCCAACAGACGCCTCCAGTTCGTCCATCTCGGCCCATAGCCGA
AAGGAACTGTACGAAATGTTGCAAGTTCCTCGGGATGCCACCGAGGCCAT
GATAAAGAAGAGCTATTATCAGCTGGCTCGCAAATACCACCCAGATAAGA
ACGCCGGTGATCAACATGCCACCTACAAGTTCCAGAAGCTCGCGGAGGCT
TACCGCGTCTTGTCCGACCCCGAATCGCGCGCCGTGTACGATCGCTATGG
AGACCGAGGCCTGGTGAAGAATAGCGTCAATAATATCGACCCATCCACAT
TGTTCGCTATGGTCTTCGGCTCTGACCAGTTCGTCCACCTCATTGGTGAA
TTGCAGCTCGCCAGTCTGGCTACCAATGTGGACGACGGTGGAAACACGCC
TTCGGAAGAGGTGCTCAATAGCATCCAGCGTGCGCGAGTCGGAAAGCTTG
TGCTCGAGATGGTTAAGATGCTCAAGCCCTGGGTCGATGGTGATAAGAAG
GGTTTCCTTGAGAATACAAACCATTTGATGCACAAGCTGAAGGATGCTAG
TTTTGGGCCCCACCTGCTCGACACGGTTGGCAAAGTATATGTGCAGCACA
CCACCCACTTGCTTGACAAGAATCGACCATTCAACCTTTCTGCGGTTGTG
CGCAAGGCGTCGGTGCGATCTCACAAGTTTGCTTCGCATCACAAAGCTCT
CAATGCCGCCAACCGCGTGATGGACAAACAGAAAAGGTTGCACGACAGGG
TCATGCGCTCTGGACGCGACCAAAAGTTCATCTCTGAAGAGGAAGCGAAG
AAAATTGCAGTGGAAATGGCCGAGAATGCCATTGATATGATGTGGAAGAT
CTCCATTATTGATATTGAGACGACCTTGGAAGACGTGCTGTTGATTGTGC
TATCAGGCAGAGATTTGGTTGCTGAGAGTGATATGTTTTCTCCGCCCCTT
TCTTCCTCGGACTCCACATCTTCCTCAAAGCCCAAGCACCGACGGCGAAT
TGGGTCGTACCTCTCTCGAGACGGTAGAGAAAAGAATGACAGGGTTCGCG
ACCGCGATCGCCTGGATTCTCAGTTGGTTCGAGCTTTGCCCCCTCTCACT
CACGGGGAACCAGCGCTCACGAGACAGCAAGTTTTGAGTGAGCGGGCCCA
TGGAATTCAAACAATGGGAAGGATCTTTATGATGGCCCACAGTCGACAAG
CTTGA

Coding sequence (CDS) from alignment at NODE_478_length_24326_cov_5.271673:625..2679+

>Gcaud3108.t1 ID=Gcaud3108.t1|Name=Gcaud3108.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2055bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:625..2679+ (Gracilaria caudata M_176_S67 male)
ATGGCCGAGTATTCGCGTGCAATTCAGCACTACTCGCTCGTCATCGATGC
GCAACCGCCGCCCGCCGCCGCGCTGCTGCTGCGCGCGCTCGTGGGACGCA
GTGAAGCGCATCTGTCCGACGCCATTAACACCGATCGACCGCAGTCGTTC
GACGCTGCCATTGCTGATGCCTCCGCGGCCGTGCAGTTGCAGCCCAGCTC
GGAGCATGCGTGGTATACATTGGGCACTGCGCACTTGCAGAATGCGCATC
CGGCGCGCGCAAAGAGTACCTTTGAGCGTGCGCTGCAGTATTGTCCGCGT
GCTCAGTCGCTGTTGGATGGTGTGAGAGATGCGCAGTTTGTAATTGACGA
GGAGGGTGCCGAGTCCGACTCAGAAATGTCGCCCACCGCTCCTGCCTCCA
ATCACTCCCCTCCACAGTCGCACAACCCTGTCGCCACCTCTTCGGACCTT
TCTGCGTCCAACCCGCTGCAAGCTCCTTCTCGGAGTGAGCGAAGTTTTAG
CCTTTTGTCGCAACGGAATCGCCACGACTTGTATCGATCCGATGTGGATT
CGCGTTCGCTGTCTTCTCGTTTCCGTTTTTCGAAGCACGACGCTCGCAGT
TCTTCATCTGAACGCAGTGCGCAGAACCCTACTCAGGGAGAGTCAGCCTC
GTTCAGTCGCCTTGCTGCTTCCCTCTCCACGTACGACAAGCGTACTGCTT
CTATGGCTTCGCCTCCCATCTTTGCCAAGTCCAATTCATTTGcttccgct
tccgcttccgcttccgcttccgcttcggcctccgcctctgcctccgcctc
tgcctccgcttccacaAGAGCAGAGACCAATGCATCCAATGATGCTTTCA
ACACTGCCCCAACAGACGCCTCCAGTTCGTCCATCTCGGCCCATAGCCGA
AAGGAACTGTACGAAATGTTGCAAGTTCCTCGGGATGCCACCGAGGCCAT
GATAAAGAAGAGCTATTATCAGCTGGCTCGCAAATACCACCCAGATAAGA
ACGCCGGTGATCAACATGCCACCTACAAGTTCCAGAAGCTCGCGGAGGCT
TACCGCGTCTTGTCCGACCCCGAATCGCGCGCCGTGTACGATCGCTATGG
AGACCGAGGCCTGGTGAAGAATAGCGTCAATAATATCGACCCATCCACAT
TGTTCGCTATGGTCTTCGGCTCTGACCAGTTCGTCCACCTCATTGGTGAA
TTGCAGCTCGCCAGTCTGGCTACCAATGTGGACGACGGTGGAAACACGCC
TTCGGAAGAGGTGCTCAATAGCATCCAGCGTGCGCGAGTCGGAAAGCTTG
TGCTCGAGATGGTTAAGATGCTCAAGCCCTGGGTCGATGGTGATAAGAAG
GGTTTCCTTGAGAATACAAACCATTTGATGCACAAGCTGAAGGATGCTAG
TTTTGGGCCCCACCTGCTCGACACGGTTGGCAAAGTATATGTGCAGCACA
CCACCCACTTGCTTGACAAGAATCGACCATTCAACCTTTCTGCGGTTGTG
CGCAAGGCGTCGGTGCGATCTCACAAGTTTGCTTCGCATCACAAAGCTCT
CAATGCCGCCAACCGCGTGATGGACAAACAGAAAAGGTTGCACGACAGGG
TCATGCGCTCTGGACGCGACCAAAAGTTCATCTCTGAAGAGGAAGCGAAG
AAAATTGCAGTGGAAATGGCCGAGAATGCCATTGATATGATGTGGAAGAT
CTCCATTATTGATATTGAGACGACCTTGGAAGACGTGCTGTTGATTGTGC
TATCAGGCAGAGATTTGGTTGCTGAGAGTGATATGTTTTCTCCGCCCCTT
TCTTCCTCGGACTCCACATCTTCCTCAAAGCCCAAGCACCGACGGCGAAT
TGGGTCGTACCTCTCTCGAGACGGTAGAGAAAAGAATGACAGGGTTCGCG
ACCGCGATCGCCTGGATTCTCAGTTGGTTCGAGCTTTGCCCCCTCTCACT
CACGGGGAACCAGCGCTCACGAGACAGCAAGTTTTGAGTGAGCGGGCCCA
TGGAATTCAAACAATGGGAAGGATCTTTATGATGGCCCACAGTCGACAAG
CTTGA