Gcaud3104.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3104.t1
Unique Name	Gcaud3104.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	213

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_304_length_31134_cov_4.503817	contig	NODE_304_length_31134_cov_4.503817:15880..16518 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1050201.KB913034_gene1063
Preferred name	xth
PFAMs	Exo_endo_phos
Max annot lvl	526524\|Erysipelotrichia
KEGG ko	ko:K01142
KEGG Pathway	ko03410,map03410
Evalue	1.03e-41
EggNOG OGs	COG0708@1\|root,COG0708@2\|Bacteria,1TPFB@1239\|Firmicutes,3VNRJ@526524\|Erysipelotrichia
EC	3.1.11.2
Description	Psort location Cytoplasmic, score
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3104	Gcaud3104	Gracilaria caudata M_176_S67 male	gene	NODE_304_length_31134_cov_4.503817 15880..16518 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3104.t1.start1	Gcaud3104.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_304_length_31134_cov_4.503817 15880..15882 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3104.t1.CDS1	Gcaud3104.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_304_length_31134_cov_4.503817 15880..16518 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3104.t1.exon1	Gcaud3104.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_304_length_31134_cov_4.503817 15880..16518 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3104.t1.stop1	Gcaud3104.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_304_length_31134_cov_4.503817 16516..16518 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3104.t1	Gcaud3104.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_304_length_31134_cov_4.503817 15880..16518 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_304_length_31134_cov_4.503817:15880..16518+
coding sequence from alignment at NODE_304_length_31134_cov_4.503817:15880..16518+

mRNA sequence

>Gcaud3104.t1 ID=Gcaud3104.t1|Name=Gcaud3104.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=213bp
MLPRFEYFVFHSSTSRLSYSGTVTYSRPQIRVCQRKIDHYIGDEEGRMVM
IEYPCLFLINVHNISSGSSLRRLKARLSWDQALRKHIRHMRGRGKPVMVV
GDLNVAREPLDVYDENAVQHRAGYSDLERISFEDTLETCGMVDIFRKFNP
QQRAFTYWDTTTGARERNDGWRVDYVLVSDDMIPAVKSVNILDHVRGSDH
CPMIIELTDGIL*

spliced messenger RNA

>Gcaud3104.t1 ID=Gcaud3104.t1|Name=Gcaud3104.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=639bp|location=Sequence derived from alignment at NODE_304_length_31134_cov_4.503817:15880..16518+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCCACGCTTTGAGTATTTTGTGTTTCACTCCAGTACCTCAAGACT
TTCGTATTCTGGAACCGTCACATACTCACGCCCGCAAATCCGCGTGTGTC
AACGAAAAATCGACCACTACATTGGCGATGAAGAAGGTCGCATGGTAATG
ATTGAATACCCATGCTTGTTTCTCATCAATGTGCACAACATCAGCTCAGG
CTCCTCACTCAGACGTTTGAAAGCTCGATTGTCCTGGGACCAAGCCTTGA
GAAAACATATCCGCCACATGCGTGGAAGAGGGAAGCCGGTAATGGTTGTG
GGCGATCTCAACGTCGCTCGAGAGCCACTGGACGTGTATGATGAAAACGC
TGTGCAGCATCGTGCTGGCTACTCTGATTTGGAGAGGATTTCTTTTGAAG
ATACATTGGAAACATGCGGAATGGTTGATATCTTTCGTAAGTTTAATCCG
CAACAACGTGCGTTTACGTACTGGGATACTACAACGGGCGCTAGAGAACG
TAACGATGGCTGGAGAGTTGATTATGTTTTGGTGTCGGATGATATGATTC
CGGCTGTTAAAAGTGTCAACATACTTGACCATGTTCGCGGAAGTGATCAC
TGTCCGATGATCATCGAGCTCACGGACGGTATTCTGTGA

protein sequence of Gcaud3104.t1

>Gcaud3104.t1 ID=Gcaud3104.t1|Name=Gcaud3104.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=213bp
MLPRFEYFVFHSSTSRLSYSGTVTYSRPQIRVCQRKIDHYIGDEEGRMVM
IEYPCLFLINVHNISSGSSLRRLKARLSWDQALRKHIRHMRGRGKPVMVV
GDLNVAREPLDVYDENAVQHRAGYSDLERISFEDTLETCGMVDIFRKFNP
QQRAFTYWDTTTGARERNDGWRVDYVLVSDDMIPAVKSVNILDHVRGSDH
CPMIIELTDGIL*

mRNA from alignment at NODE_304_length_31134_cov_4.503817:15880..16518+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3104.t1 ID=Gcaud3104.t1|Name=Gcaud3104.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=639bp|location=Sequence derived from alignment at NODE_304_length_31134_cov_4.503817:15880..16518+ (Gracilaria caudata M_176_S67 male)
ATGTTGCCACGCTTTGAGTATTTTGTGTTTCACTCCAGTACCTCAAGACT
TTCGTATTCTGGAACCGTCACATACTCACGCCCGCAAATCCGCGTGTGTC
AACGAAAAATCGACCACTACATTGGCGATGAAGAAGGTCGCATGGTAATG
ATTGAATACCCATGCTTGTTTCTCATCAATGTGCACAACATCAGCTCAGG
CTCCTCACTCAGACGTTTGAAAGCTCGATTGTCCTGGGACCAAGCCTTGA
GAAAACATATCCGCCACATGCGTGGAAGAGGGAAGCCGGTAATGGTTGTG
GGCGATCTCAACGTCGCTCGAGAGCCACTGGACGTGTATGATGAAAACGC
TGTGCAGCATCGTGCTGGCTACTCTGATTTGGAGAGGATTTCTTTTGAAG
ATACATTGGAAACATGCGGAATGGTTGATATCTTTCGTAAGTTTAATCCG
CAACAACGTGCGTTTACGTACTGGGATACTACAACGGGCGCTAGAGAACG
TAACGATGGCTGGAGAGTTGATTATGTTTTGGTGTCGGATGATATGATTC
CGGCTGTTAAAAGTGTCAACATACTTGACCATGTTCGCGGAAGTGATCAC
TGTCCGATGATCATCGAGCTCACGGACGGTATTCTGTGA

Coding sequence (CDS) from alignment at NODE_304_length_31134_cov_4.503817:15880..16518+

>Gcaud3104.t1 ID=Gcaud3104.t1|Name=Gcaud3104.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=639bp|location=Sequence derived from alignment at NODE_304_length_31134_cov_4.503817:15880..16518+ (Gracilaria caudata M_176_S67 male)
ATGTTGCCACGCTTTGAGTATTTTGTGTTTCACTCCAGTACCTCAAGACT
TTCGTATTCTGGAACCGTCACATACTCACGCCCGCAAATCCGCGTGTGTC
AACGAAAAATCGACCACTACATTGGCGATGAAGAAGGTCGCATGGTAATG
ATTGAATACCCATGCTTGTTTCTCATCAATGTGCACAACATCAGCTCAGG
CTCCTCACTCAGACGTTTGAAAGCTCGATTGTCCTGGGACCAAGCCTTGA
GAAAACATATCCGCCACATGCGTGGAAGAGGGAAGCCGGTAATGGTTGTG
GGCGATCTCAACGTCGCTCGAGAGCCACTGGACGTGTATGATGAAAACGC
TGTGCAGCATCGTGCTGGCTACTCTGATTTGGAGAGGATTTCTTTTGAAG
ATACATTGGAAACATGCGGAATGGTTGATATCTTTCGTAAGTTTAATCCG
CAACAACGTGCGTTTACGTACTGGGATACTACAACGGGCGCTAGAGAACG
TAACGATGGCTGGAGAGTTGATTATGTTTTGGTGTCGGATGATATGATTC
CGGCTGTTAAAAGTGTCAACATACTTGACCATGTTCGCGGAAGTGATCAC
TGTCCGATGATCATCGAGCTCACGGACGGTATTCTGTGA