Gcaud3100.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3100.t1
Unique Name	Gcaud3100.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	660

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_304_length_31134_cov_4.503817	contig	NODE_304_length_31134_cov_4.503817:3466..5445 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3712.Bo5g136710.1
PFAMs	ATE_C,ATE_N
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00055,RC00064
KEGG ko	ko:K00685
KEGG Reaction	R03862
GOs	GO:0001101,GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009894,GO:0009987,GO:0010029,GO:0010033,GO:0010150,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019216,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0032501,GO:0032502,GO:0033993,GO:0036211,GO:0042221,GO:0043170,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0048366,GO:0048367,GO:0048580,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050832,GO:0050896,GO:0050994,GO:0051239,GO:0051603,GO:0051704,GO:0051707,GO:0065007,GO:0071704,GO:0080090,GO:0090693,GO:0097305,GO:0098542,GO:0099402,GO:0140096,GO:1900140,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:2000026
Evalue	2.92e-65
EggNOG OGs	COG2935@1\|root,KOG1193@2759\|Eukaryota,37PUQ@33090\|Viridiplantae,3GENZ@35493\|Streptophyta,3HNQS@3699\|Brassicales
EC	2.3.2.8
Description	Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway
COG category	O
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3100	Gcaud3100	Gracilaria caudata M_176_S67 male	gene	NODE_304_length_31134_cov_4.503817 3466..5445 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3100.t1.stop1	Gcaud3100.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_304_length_31134_cov_4.503817 3466..3468 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3100.t1.CDS1	Gcaud3100.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_304_length_31134_cov_4.503817 3466..5445 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3100.t1.exon1	Gcaud3100.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_304_length_31134_cov_4.503817 3466..5445 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3100.t1.start1	Gcaud3100.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_304_length_31134_cov_4.503817 5443..5445 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3100.t1	Gcaud3100.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_304_length_31134_cov_4.503817 3466..5445 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_304_length_31134_cov_4.503817:3466..5445-
coding sequence from alignment at NODE_304_length_31134_cov_4.503817:3466..5445-

mRNA sequence

>Gcaud3100.t1 ID=Gcaud3100.t1|Name=Gcaud3100.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp
MIQSAQVPRSRVIHLGSDSSRCGYCRRSDGSHNYALWALRLHVEDYQELL
DAGWRRSGNYLYRPHLDNTCCPPYVIRLEASSFKPSSTHKRVLKRLRHAS
TSGSITEPRVQRDKGKDKERRKPDSQYMSKGSEHKLETIRAAVTEAVQKL
VAANELNHGLRMEHVQEAISKFKVFPPRQRTKGTSSSPNRRDRDRAASMH
VDNIESLRRKNDPPNMVSNIALVLAATERRSNTKANSPHIQRKTVKPKGD
DPPDRQIYLAHALQRILDRNQSVSSIADVGVTYPGFLNFWWNPPDGTSRG
DTVMSNKGNDDTHSTDTLFQVKQVQPLPSITEHRWRAKSSSVLKSIDVSD
VSEFDVISDVDQGQTSNPSHVNTNSSPPEAKQQAPQSRELSSASKFSMQM
VPSEFRDECYELFRRYQMSIHHERASQCTKDIYTRFLVDSPLTRHQSASN
SDERYGSYHLLYRIDGRLFAVGVVDVLPRCLSSVYLFYDPDFAKLSPGTL
SALKEIEWIRSVSHIYPSLRHYYMGYYIHSCPKMRYKASFCPSELLCEVS
KNWVSVLEARRILDSIGERALRLAPPQMPLAPGAAYFQFDDEELRRLADE
AILHVGKADDEVMQMLSFKSLRETIGSRYPEQINTIRSGIEEFLRHVGKR
NAGFYIHML*

spliced messenger RNA

>Gcaud3100.t1 ID=Gcaud3100.t1|Name=Gcaud3100.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at NODE_304_length_31134_cov_4.503817:3466..5445- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCAGTCTGCTCAGGTTCCGCGTTCGCGCGTAATCCATTTGGGGTC
GGATTCGTCAAGATGTGGCTACTGTCGAAGGAGCGATGGCAGTCATAATT
ATGCTCTGTGGGCTCTTCGATTGCACGTCGAAGACTACCAGGAACTGTTA
GATGCTGGGTGGCGCCGAAGTGGAAATTATCTATATCGCCCACATCTTGA
CAACACTTGCTGCCCCCCGTATGTCATTCGTCTTGAAGCGAGTAGTTTCA
AACCGTCCAGTACGCACAAGCGCGTACTTAAGCGCCTGCGTCATGCTTCC
ACCTCAGGTTCGATCACTGAACCGCGTGTACAAAGGGACAAGGGCAAAGA
CAAAGAACGACGAAAACCAGATTCGCAATATATGTCTAAAGGTTCCGAAC
ATAAGCTGGAGACTATACGAGCTGCCGTCACTGAGGCGGTTCAAAAGCTT
GTTGCCGCCAATGAATTGAATCACGGTTTGCGAATGGAGCACGTGCAGGA
GGCTATTTCGAAGTTCAAGGTGTTCCCACCGCGCCAGCGAACGAAAGGGA
CGAGTAGCAGTCCGAATAGGAGAGACCGAGATCGAGCAGCATCAATGCAT
GTCGACAACATTGAGTCCTTGCGACGAAAGAATGATCCACCTAATATGGT
CAGCAATATTGCCTTAGTTTTGGCAGCAACAGAACGAAGAAGTAATACAA
AAGCAAATTCGCCCCACATACAGCGAAAGACGGTGAAACCGAAAGGAGAT
GACCCTCCAGATAGGCAGATATACCTTGCACATGCTCTTCAGCGCATCCT
GGATCGAAACCAGTCCGTTTCAAGTATTGCAGATGTTGGAGTTACATATC
CGGGATTTCTTAACTTCTGGTGGAATCCACCAGATGGAACTTCGCGCGGA
GACACCGTAATGTCAAACAAAGGGAACGACGATACGCATTCAACTGACAC
CTTGTTTCAAGTGAAGCAAGTCCAGCCGCTACCCAGTATAACTGAACATA
GATGGAGAGCAAAAAGTTCATCGGTCCTAAAGAGCATCGATGTAAGCGAT
GTCAGTGAGTTTGATGTGATCAGTGACGTCGATCAGGGCCAAACATCAAA
TCCTTCTCACGTTAATACAAACTCATCTCCGCCCGAAGCCAAACAGCAAG
CCCCACAAAGTCGAGAGCTCTCAAGTGCAAGCAAATTTTCGATGCAAATG
GTACCTTCGGAATTCCGCGACGAATGTTACGAGCTATTTCGTAGGTATCA
AATGTCAATACATCATGAACGAGCATCGCAATGCACGAAAGACATTTACA
CGAGGTTCCTTGTGGATAGTCCCTTGACAAGGCATCAATCTGCGTCGAAC
TCAGACGAGAGATATGGATCTTACCATCTTCTTTATAGAATCGACGGCAG
GCTTTTTGCAGTCGGAGTAGTGGACGTGCTACCACGGTGTCTTAGCTCCG
TTTATCTTTTTTACGATCCTGATTTCGCAAAGCTGTCACCAGGAACACTT
TCAGCTCTCAAGGAAATCGAATGGATTAGGAGCGTCTCCCATATATACCC
ATCTCTGCGTCATTATTACATGGGCTACTATATTCACTCCTGTCCAAAAA
TGAGATACAAAGCATCCTTCTGCCCATCAGAACTTCTTTGTGAAGTGTCA
AAGAACTGGGTGTCAGTCTTAGAAGCACGGCGGATCCTGGACAGTATCGG
AGAGCGCGCATTGAGACTTGCTCCTCCACAAATGCCTCTAGCGCCCGGCG
CTGCGTATTTTCAGTTTGACGACGAAGAACTAAGACGATTAGCAGATGAA
GCCATCTTACACGTCGGAAAAGCCGATGACGAGGTGATGCAAATGTTGTC
TTTCAAATCTCTGAGGGAAACAATAGGATCTCGATATCCAGAGCAGATCA
ACACGATACGCAGCGGCATCGAGGAGTTCCTACGTCACGTAGGAAAGCGC
AACGCGGGATTTTACATACACATGTTGTGA

protein sequence of Gcaud3100.t1

>Gcaud3100.t1 ID=Gcaud3100.t1|Name=Gcaud3100.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=660bp
MIQSAQVPRSRVIHLGSDSSRCGYCRRSDGSHNYALWALRLHVEDYQELL
DAGWRRSGNYLYRPHLDNTCCPPYVIRLEASSFKPSSTHKRVLKRLRHAS
TSGSITEPRVQRDKGKDKERRKPDSQYMSKGSEHKLETIRAAVTEAVQKL
VAANELNHGLRMEHVQEAISKFKVFPPRQRTKGTSSSPNRRDRDRAASMH
VDNIESLRRKNDPPNMVSNIALVLAATERRSNTKANSPHIQRKTVKPKGD
DPPDRQIYLAHALQRILDRNQSVSSIADVGVTYPGFLNFWWNPPDGTSRG
DTVMSNKGNDDTHSTDTLFQVKQVQPLPSITEHRWRAKSSSVLKSIDVSD
VSEFDVISDVDQGQTSNPSHVNTNSSPPEAKQQAPQSRELSSASKFSMQM
VPSEFRDECYELFRRYQMSIHHERASQCTKDIYTRFLVDSPLTRHQSASN
SDERYGSYHLLYRIDGRLFAVGVVDVLPRCLSSVYLFYDPDFAKLSPGTL
SALKEIEWIRSVSHIYPSLRHYYMGYYIHSCPKMRYKASFCPSELLCEVS
KNWVSVLEARRILDSIGERALRLAPPQMPLAPGAAYFQFDDEELRRLADE
AILHVGKADDEVMQMLSFKSLRETIGSRYPEQINTIRSGIEEFLRHVGKR
NAGFYIHML*

mRNA from alignment at NODE_304_length_31134_cov_4.503817:3466..5445-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3100.t1 ID=Gcaud3100.t1|Name=Gcaud3100.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at NODE_304_length_31134_cov_4.503817:3466..5445- (Gracilaria caudata M_176_S67 male)
ATGATTCAGTCTGCTCAGGTTCCGCGTTCGCGCGTAATCCATTTGGGGTC
GGATTCGTCAAGATGTGGCTACTGTCGAAGGAGCGATGGCAGTCATAATT
ATGCTCTGTGGGCTCTTCGATTGCACGTCGAAGACTACCAGGAACTGTTA
GATGCTGGGTGGCGCCGAAGTGGAAATTATCTATATCGCCCACATCTTGA
CAACACTTGCTGCCCCCCGTATGTCATTCGTCTTGAAGCGAGTAGTTTCA
AACCGTCCAGTACGCACAAGCGCGTACTTAAGCGCCTGCGTCATGCTTCC
ACCTCAGGTTCGATCACTGAACCGCGTGTACAAAGGGACAAGGGCAAAGA
CAAAGAACGACGAAAACCAGATTCGCAATATATGTCTAAAGGTTCCGAAC
ATAAGCTGGAGACTATACGAGCTGCCGTCACTGAGGCGGTTCAAAAGCTT
GTTGCCGCCAATGAATTGAATCACGGTTTGCGAATGGAGCACGTGCAGGA
GGCTATTTCGAAGTTCAAGGTGTTCCCACCGCGCCAGCGAACGAAAGGGA
CGAGTAGCAGTCCGAATAGGAGAGACCGAGATCGAGCAGCATCAATGCAT
GTCGACAACATTGAGTCCTTGCGACGAAAGAATGATCCACCTAATATGGT
CAGCAATATTGCCTTAGTTTTGGCAGCAACAGAACGAAGAAGTAATACAA
AAGCAAATTCGCCCCACATACAGCGAAAGACGGTGAAACCGAAAGGAGAT
GACCCTCCAGATAGGCAGATATACCTTGCACATGCTCTTCAGCGCATCCT
GGATCGAAACCAGTCCGTTTCAAGTATTGCAGATGTTGGAGTTACATATC
CGGGATTTCTTAACTTCTGGTGGAATCCACCAGATGGAACTTCGCGCGGA
GACACCGTAATGTCAAACAAAGGGAACGACGATACGCATTCAACTGACAC
CTTGTTTCAAGTGAAGCAAGTCCAGCCGCTACCCAGTATAACTGAACATA
GATGGAGAGCAAAAAGTTCATCGGTCCTAAAGAGCATCGATGTAAGCGAT
GTCAGTGAGTTTGATGTGATCAGTGACGTCGATCAGGGCCAAACATCAAA
TCCTTCTCACGTTAATACAAACTCATCTCCGCCCGAAGCCAAACAGCAAG
CCCCACAAAGTCGAGAGCTCTCAAGTGCAAGCAAATTTTCGATGCAAATG
GTACCTTCGGAATTCCGCGACGAATGTTACGAGCTATTTCGTAGGTATCA
AATGTCAATACATCATGAACGAGCATCGCAATGCACGAAAGACATTTACA
CGAGGTTCCTTGTGGATAGTCCCTTGACAAGGCATCAATCTGCGTCGAAC
TCAGACGAGAGATATGGATCTTACCATCTTCTTTATAGAATCGACGGCAG
GCTTTTTGCAGTCGGAGTAGTGGACGTGCTACCACGGTGTCTTAGCTCCG
TTTATCTTTTTTACGATCCTGATTTCGCAAAGCTGTCACCAGGAACACTT
TCAGCTCTCAAGGAAATCGAATGGATTAGGAGCGTCTCCCATATATACCC
ATCTCTGCGTCATTATTACATGGGCTACTATATTCACTCCTGTCCAAAAA
TGAGATACAAAGCATCCTTCTGCCCATCAGAACTTCTTTGTGAAGTGTCA
AAGAACTGGGTGTCAGTCTTAGAAGCACGGCGGATCCTGGACAGTATCGG
AGAGCGCGCATTGAGACTTGCTCCTCCACAAATGCCTCTAGCGCCCGGCG
CTGCGTATTTTCAGTTTGACGACGAAGAACTAAGACGATTAGCAGATGAA
GCCATCTTACACGTCGGAAAAGCCGATGACGAGGTGATGCAAATGTTGTC
TTTCAAATCTCTGAGGGAAACAATAGGATCTCGATATCCAGAGCAGATCA
ACACGATACGCAGCGGCATCGAGGAGTTCCTACGTCACGTAGGAAAGCGC
AACGCGGGATTTTACATACACATGTTGTGA

Coding sequence (CDS) from alignment at NODE_304_length_31134_cov_4.503817:3466..5445-

>Gcaud3100.t1 ID=Gcaud3100.t1|Name=Gcaud3100.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1980bp|location=Sequence derived from alignment at NODE_304_length_31134_cov_4.503817:3466..5445- (Gracilaria caudata M_176_S67 male)
ATGATTCAGTCTGCTCAGGTTCCGCGTTCGCGCGTAATCCATTTGGGGTC
GGATTCGTCAAGATGTGGCTACTGTCGAAGGAGCGATGGCAGTCATAATT
ATGCTCTGTGGGCTCTTCGATTGCACGTCGAAGACTACCAGGAACTGTTA
GATGCTGGGTGGCGCCGAAGTGGAAATTATCTATATCGCCCACATCTTGA
CAACACTTGCTGCCCCCCGTATGTCATTCGTCTTGAAGCGAGTAGTTTCA
AACCGTCCAGTACGCACAAGCGCGTACTTAAGCGCCTGCGTCATGCTTCC
ACCTCAGGTTCGATCACTGAACCGCGTGTACAAAGGGACAAGGGCAAAGA
CAAAGAACGACGAAAACCAGATTCGCAATATATGTCTAAAGGTTCCGAAC
ATAAGCTGGAGACTATACGAGCTGCCGTCACTGAGGCGGTTCAAAAGCTT
GTTGCCGCCAATGAATTGAATCACGGTTTGCGAATGGAGCACGTGCAGGA
GGCTATTTCGAAGTTCAAGGTGTTCCCACCGCGCCAGCGAACGAAAGGGA
CGAGTAGCAGTCCGAATAGGAGAGACCGAGATCGAGCAGCATCAATGCAT
GTCGACAACATTGAGTCCTTGCGACGAAAGAATGATCCACCTAATATGGT
CAGCAATATTGCCTTAGTTTTGGCAGCAACAGAACGAAGAAGTAATACAA
AAGCAAATTCGCCCCACATACAGCGAAAGACGGTGAAACCGAAAGGAGAT
GACCCTCCAGATAGGCAGATATACCTTGCACATGCTCTTCAGCGCATCCT
GGATCGAAACCAGTCCGTTTCAAGTATTGCAGATGTTGGAGTTACATATC
CGGGATTTCTTAACTTCTGGTGGAATCCACCAGATGGAACTTCGCGCGGA
GACACCGTAATGTCAAACAAAGGGAACGACGATACGCATTCAACTGACAC
CTTGTTTCAAGTGAAGCAAGTCCAGCCGCTACCCAGTATAACTGAACATA
GATGGAGAGCAAAAAGTTCATCGGTCCTAAAGAGCATCGATGTAAGCGAT
GTCAGTGAGTTTGATGTGATCAGTGACGTCGATCAGGGCCAAACATCAAA
TCCTTCTCACGTTAATACAAACTCATCTCCGCCCGAAGCCAAACAGCAAG
CCCCACAAAGTCGAGAGCTCTCAAGTGCAAGCAAATTTTCGATGCAAATG
GTACCTTCGGAATTCCGCGACGAATGTTACGAGCTATTTCGTAGGTATCA
AATGTCAATACATCATGAACGAGCATCGCAATGCACGAAAGACATTTACA
CGAGGTTCCTTGTGGATAGTCCCTTGACAAGGCATCAATCTGCGTCGAAC
TCAGACGAGAGATATGGATCTTACCATCTTCTTTATAGAATCGACGGCAG
GCTTTTTGCAGTCGGAGTAGTGGACGTGCTACCACGGTGTCTTAGCTCCG
TTTATCTTTTTTACGATCCTGATTTCGCAAAGCTGTCACCAGGAACACTT
TCAGCTCTCAAGGAAATCGAATGGATTAGGAGCGTCTCCCATATATACCC
ATCTCTGCGTCATTATTACATGGGCTACTATATTCACTCCTGTCCAAAAA
TGAGATACAAAGCATCCTTCTGCCCATCAGAACTTCTTTGTGAAGTGTCA
AAGAACTGGGTGTCAGTCTTAGAAGCACGGCGGATCCTGGACAGTATCGG
AGAGCGCGCATTGAGACTTGCTCCTCCACAAATGCCTCTAGCGCCCGGCG
CTGCGTATTTTCAGTTTGACGACGAAGAACTAAGACGATTAGCAGATGAA
GCCATCTTACACGTCGGAAAAGCCGATGACGAGGTGATGCAAATGTTGTC
TTTCAAATCTCTGAGGGAAACAATAGGATCTCGATATCCAGAGCAGATCA
ACACGATACGCAGCGGCATCGAGGAGTTCCTACGTCACGTAGGAAAGCGC
AACGCGGGATTTTACATACACATGTTGTGA