Gcaud3098.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3098.t1
Unique NameGcaud3098.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length120
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_304_length_31134_cov_4.503817contigNODE_304_length_31134_cov_4.503817:349..985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704432.1
Preferred nameUFC1
PFAMsUFC1
Max annot lvl2759|Eukaryota
KEGG koko:K12165
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031624,GO:0032446,GO:0033554,GO:0034976,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044390,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070647,GO:0071568,GO:0071569,GO:0071704,GO:0140096,GO:1901564,GO:1990564,GO:1990592
Evalue7.26e-33
EggNOG OGsKOG3357@1|root,KOG3357@2759|Eukaryota
DescriptionUFM1 transferase activity
COG categoryS
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3098Gcaud3098Gracilaria caudata M_176_S67 malegeneNODE_304_length_31134_cov_4.503817 349..985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3098.t1Gcaud3098.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_304_length_31134_cov_4.503817 349..985 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3098.t1.stop1Gcaud3098.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_304_length_31134_cov_4.503817 349..351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3098.t1.CDS1Gcaud3098.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_304_length_31134_cov_4.503817 349..400 -
Gcaud3098.t1.CDS2Gcaud3098.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_304_length_31134_cov_4.503817 496..576 -
Gcaud3098.t1.CDS3Gcaud3098.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_304_length_31134_cov_4.503817 689..795 -
Gcaud3098.t1.CDS4Gcaud3098.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_304_length_31134_cov_4.503817 866..985 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3098.t1.exon1Gcaud3098.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_304_length_31134_cov_4.503817 349..400 -
Gcaud3098.t1.exon2Gcaud3098.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_304_length_31134_cov_4.503817 496..576 -
Gcaud3098.t1.exon3Gcaud3098.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_304_length_31134_cov_4.503817 689..795 -
Gcaud3098.t1.exon4Gcaud3098.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_304_length_31134_cov_4.503817 866..985 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3098.t1.intron1Gcaud3098.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_304_length_31134_cov_4.503817 401..495 -
Gcaud3098.t1.intron2Gcaud3098.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_304_length_31134_cov_4.503817 577..688 -
Gcaud3098.t1.intron3Gcaud3098.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_304_length_31134_cov_4.503817 796..865 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3098.t1.start1Gcaud3098.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_304_length_31134_cov_4.503817 983..985 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3098.t1 ID=Gcaud3098.t1|Name=Gcaud3098.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=120bp
MDEGTKETVNKLPLLSVRASPRDKDAWTARLREELTALIQYVKINKEQDK
DWFQIECNKTGTRWTGKCWYYYEQIRYARPFIFSRCGRETSRGLELHIPL
RYRWGRGWLQRFLTWSVEV*
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spliced messenger RNA

>Gcaud3098.t1 ID=Gcaud3098.t1|Name=Gcaud3098.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=360bp|location=Sequence derived from alignment at NODE_304_length_31134_cov_4.503817:349..985- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAAGGGACAAAGGAGACTGTTAACAAACTTCCCCTGCTGAGCGT
TCGAGCCTCACCTCGCGATAAAGATGCATGGACCGCGAGGTTAAGGGAAG
AGTTGACAGCTCTCATACAGTACGTGAAAATTAACAAAGAACAAGATAAA
GACTGGTTTCAGATCGAATGTAACAAGACAGGAACCAGATGGACTGGGAA
ATGTTGGTACTATTACGAGCAAATACGATATGCCAGACCATTCATTTTCA
GCCGCTGTGGTCGAGAAACGTCCCGCGGTTTGGAATTGCACATTCCCTTG
CGTTATCGTTGGGGCCGTGGTTGGCTGCAGAGATTCCTGACTTGGTCGGT
AGAGGTGTAA
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protein sequence of Gcaud3098.t1

>Gcaud3098.t1 ID=Gcaud3098.t1|Name=Gcaud3098.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=120bp
MDEGTKETVNKLPLLSVRASPRDKDAWTARLREELTALIQYVKINKEQDK
DWFQIECNKTGTRWTGKCWYYYEQIRYARPFIFSRCGRETSRGLELHIPL
RYRWGRGWLQRFLTWSVEV*
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mRNA from alignment at NODE_304_length_31134_cov_4.503817:349..985-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3098.t1 ID=Gcaud3098.t1|Name=Gcaud3098.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=637bp|location=Sequence derived from alignment at NODE_304_length_31134_cov_4.503817:349..985- (Gracilaria caudata M_176_S67 male)
ATGGACGAAGGGACAAAGGAGACTGTTAACAAACTTCCCCTGCTGAGCGT
TCGAGCCTCACCTCGCGATAAAGATGCATGGACCGCGAGGTTAAGGGAAG
AGTTGACAGCTCTCATACAGGTAATTGATGCTCATTCTATACTTTCTTGC
TTTTTTATGTTATAGCTAACCTGGATGTTTATCTATGCAGTACGTGAAAA
TTAACAAAGAACAAGATAAAGACTGGTTTCAGATCGAATGTAACAAGACA
GGAACCAGATGGACTGGGAAATGTTGGTACTATTACGAGCAAATACGGTA
TGAATTCGACCTTGAATTTGAAATTCCTGTAACATATCCTGCCTCAGCAC
CTGAGCTCAAACTTCCTCAACTTGAAGGATTGACCTCAAAAATGTATCGT
GGCGGGAAGATATGCCAGACCATTCATTTTCAGCCGCTGTGGTCGAGAAA
CGTCCCGCGGTTTGGAATTGCACATTCCCTTGCGTTATCGGTAAGTAGGC
CTTGTCGCATGGTCCCATCTCAGTAGATCTACATCTCAGTGGTCACTGAC
GAAAATGCTCCTTGACTGTGCTTTGTCGTTGACAGTTGGGGCCGTGGTTG
GCTGCAGAGATTCCTGACTTGGTCGGTAGAGGTGTAA
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Coding sequence (CDS) from alignment at NODE_304_length_31134_cov_4.503817:349..985-

>Gcaud3098.t1 ID=Gcaud3098.t1|Name=Gcaud3098.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=360bp|location=Sequence derived from alignment at NODE_304_length_31134_cov_4.503817:349..985- (Gracilaria caudata M_176_S67 male)
ATGGACGAAGGGACAAAGGAGACTGTTAACAAACTTCCCCTGCTGAGCGT
TCGAGCCTCACCTCGCGATAAAGATGCATGGACCGCGAGGTTAAGGGAAG
AGTTGACAGCTCTCATACAGTACGTGAAAATTAACAAAGAACAAGATAAA
GACTGGTTTCAGATCGAATGTAACAAGACAGGAACCAGATGGACTGGGAA
ATGTTGGTACTATTACGAGCAAATACGATATGCCAGACCATTCATTTTCA
GCCGCTGTGGTCGAGAAACGTCCCGCGGTTTGGAATTGCACATTCCCTTG
CGTTATCGTTGGGGCCGTGGTTGGCTGCAGAGATTCCTGACTTGGTCGGT
AGAGGTGTAA
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