Gcaud3096.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3096.t1
Unique NameGcaud3096.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1191_length_12841_cov_4.930980contigNODE_1191_length_12841_cov_4.930980:3298..4622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3096Gcaud3096Gracilaria caudata M_176_S67 malegeneNODE_1191_length_12841_cov_4.930980 3298..4622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3096.t1Gcaud3096.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1191_length_12841_cov_4.930980 3298..4622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3096.t1.CDS1Gcaud3096.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1191_length_12841_cov_4.930980 3298..4412 -
Gcaud3096.t1.CDS2Gcaud3096.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1191_length_12841_cov_4.930980 4574..4622 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3096.t1.exon1Gcaud3096.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1191_length_12841_cov_4.930980 3298..4412 -
Gcaud3096.t1.exon2Gcaud3096.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1191_length_12841_cov_4.930980 4574..4622 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3096.t1.intron1Gcaud3096.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1191_length_12841_cov_4.930980 4413..4573 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3096.t1.start1Gcaud3096.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1191_length_12841_cov_4.930980 4620..4622 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3096.t1 ID=Gcaud3096.t1|Name=Gcaud3096.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=388bp
MSPSYSSRCSLAPFSHHDDCSGTADCVAPRMCFNCAEPKCYCVKPPPHAN
ITCSSSSDCDPGEFCFWDLQVGLTSGTCLSSRYFGSLNETFPILHKPINY
APPAHSFGLTGDRCFFHEDCMGTRSCMARKSFVFELRNVSTCEVSASSCV
CTPPSYTECESASDCDHPNEICASVLFQLSDTITFEDIESDQKASLTPVC
ISSNLTRYDNVLPLSHTNFSSFISGTSAAEIRLLPRAPSMILPAPQRIDP
ELVPFSVSGLSVFNTFTTNELLNEFIGGILSLIIVAQLHKILQGLVYSKM
GIHHHGYSRYIMYSRLSSFRHVSRILGGREPFQKGKASSPRQSLSTLNYK
LAIVPFLAFLFLIGAEVTTIMAGTDARVESFADQNFDP
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spliced messenger RNA

>Gcaud3096.t1 ID=Gcaud3096.t1|Name=Gcaud3096.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at NODE_1191_length_12841_cov_4.930980:3298..4622- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCCTTCGTATTCGTCGCGATGCTCTCTCGCGCCATTTTCTCATCA
TGACGACTGTTCTGGTACTGCTGACTGCGTCGCCCCCCGAATGTGCTTCA
ATTGCGCCGAACCTAAATGCTATTGCGTAAAGCCCCCACCGCACGCAAAC
ATTACCTGTTCTTCTTCCAGCGACTGTGACCCGGGAGAGTTCTGTTTTTG
GGATCTTCAGGTCGGTCTCACTTCTGGAACCTGTCTGTCCTCTCGTTACT
TTGGCAGTTTGAACGAAACCTTTCCAATTCTTCATAAGCCCATCAACTAC
GCTCCCCCAGCCCACTCCTTTGGTCTCACCGGCGACCGATGCTTCTTCCA
TGAGGACTGTATGGGAACACGCAGTTGTATGGCTCGCAAAAGCTTCGTTT
TTGAACTGAGAAATGTTTCCACGTGCGAGGTCTCGGCGTCTTCTTGCGTT
TGTACGCCTCCTAGTTACACGGAATGCGAATCTGCTTCAGACTGCGACCA
TCCGAATGAGATCTGTGCGTCAGTGTTGTTCCAGCTTTCGGACACTATCA
CTTTCGAGGACATAGAGTCTGATCAGAAGGCGAGCCTCACTCCTGTTTGT
ATTTCGTCCAACCTCACGCGATATGACAATGTTCTTCCTCTATCACACAC
AAATTTCTCATCCTTTATCTCAGGAACGTCTGCAGCGGAGATACGCCTTT
TACCACGAGCGCCTTCAATGATTCTGCCGGCTCCTCAGCGCATAGATCCG
GAGTTGGTACCATTCTCAGTGTCTGGACTGTCTGTGTTCAATACCTTCAC
CACCAACGAGCTGTTAAACGAATTCATTGGTGGAATCCTGTCTTTGATTA
TTGTGGCCCAACTCCACAAGATTTTGCAAGGTTTGGTTTATTCCAAAATG
GGTATCCATCATCATGGCTACTCCAGGTACATCATGTATTCGAGGCTATC
TAGTTTCCGACACGTTTCCCGAATCTTAGGCGGACGCGAACCGTTTCAGA
AGGGCAAAGCATCTTCTCCCCGACAAAGCCTTTCTACGTTGAACTACAAG
CTGGCGATTGTTCCATTTCTGGCATTTCTTTTTCTCATCGGCGCTGAGGT
GACAACTATCATGGCAGGAACAGACGCACGTGTGGAGTCGTTCGCTGACC
AGAACTTTGATCCC
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protein sequence of Gcaud3096.t1

>Gcaud3096.t1 ID=Gcaud3096.t1|Name=Gcaud3096.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=388bp
MSPSYSSRCSLAPFSHHDDCSGTADCVAPRMCFNCAEPKCYCVKPPPHAN
ITCSSSSDCDPGEFCFWDLQVGLTSGTCLSSRYFGSLNETFPILHKPINY
APPAHSFGLTGDRCFFHEDCMGTRSCMARKSFVFELRNVSTCEVSASSCV
CTPPSYTECESASDCDHPNEICASVLFQLSDTITFEDIESDQKASLTPVC
ISSNLTRYDNVLPLSHTNFSSFISGTSAAEIRLLPRAPSMILPAPQRIDP
ELVPFSVSGLSVFNTFTTNELLNEFIGGILSLIIVAQLHKILQGLVYSKM
GIHHHGYSRYIMYSRLSSFRHVSRILGGREPFQKGKASSPRQSLSTLNYK
LAIVPFLAFLFLIGAEVTTIMAGTDARVESFADQNFDP
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mRNA from alignment at NODE_1191_length_12841_cov_4.930980:3298..4622-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3096.t1 ID=Gcaud3096.t1|Name=Gcaud3096.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1325bp|location=Sequence derived from alignment at NODE_1191_length_12841_cov_4.930980:3298..4622- (Gracilaria caudata M_176_S67 male)
ATGTCCCCTTCGTATTCGTCGCGATGCTCTCTCGCGCCATTTTCTCATCG
TACGTCCCCTTCTCCGTCTTTGTGATGTTCTTCGTCATTCAAGCTCAAGC
CGCCGATCGCGTGGTCAGCGATGATGACGTGAACGTCATTCTGTCTGCAC
TGCATCCCCAATGGCCTCCTGCTTCCACACCGACTCCTTCTGACATCGAA
GGTCTCACAGATGACGACTGTTCTGGTACTGCTGACTGCGTCGCCCCCCG
AATGTGCTTCAATTGCGCCGAACCTAAATGCTATTGCGTAAAGCCCCCAC
CGCACGCAAACATTACCTGTTCTTCTTCCAGCGACTGTGACCCGGGAGAG
TTCTGTTTTTGGGATCTTCAGGTCGGTCTCACTTCTGGAACCTGTCTGTC
CTCTCGTTACTTTGGCAGTTTGAACGAAACCTTTCCAATTCTTCATAAGC
CCATCAACTACGCTCCCCCAGCCCACTCCTTTGGTCTCACCGGCGACCGA
TGCTTCTTCCATGAGGACTGTATGGGAACACGCAGTTGTATGGCTCGCAA
AAGCTTCGTTTTTGAACTGAGAAATGTTTCCACGTGCGAGGTCTCGGCGT
CTTCTTGCGTTTGTACGCCTCCTAGTTACACGGAATGCGAATCTGCTTCA
GACTGCGACCATCCGAATGAGATCTGTGCGTCAGTGTTGTTCCAGCTTTC
GGACACTATCACTTTCGAGGACATAGAGTCTGATCAGAAGGCGAGCCTCA
CTCCTGTTTGTATTTCGTCCAACCTCACGCGATATGACAATGTTCTTCCT
CTATCACACACAAATTTCTCATCCTTTATCTCAGGAACGTCTGCAGCGGA
GATACGCCTTTTACCACGAGCGCCTTCAATGATTCTGCCGGCTCCTCAGC
GCATAGATCCGGAGTTGGTACCATTCTCAGTGTCTGGACTGTCTGTGTTC
AATACCTTCACCACCAACGAGCTGTTAAACGAATTCATTGGTGGAATCCT
GTCTTTGATTATTGTGGCCCAACTCCACAAGATTTTGCAAGGTTTGGTTT
ATTCCAAAATGGGTATCCATCATCATGGCTACTCCAGGTACATCATGTAT
TCGAGGCTATCTAGTTTCCGACACGTTTCCCGAATCTTAGGCGGACGCGA
ACCGTTTCAGAAGGGCAAAGCATCTTCTCCCCGACAAAGCCTTTCTACGT
TGAACTACAAGCTGGCGATTGTTCCATTTCTGGCATTTCTTTTTCTCATC
GGCGCTGAGGTGACAACTATCATGGCAGGAACAGACGCACGTGTGGAGTC
GTTCGCTGACCAGAACTTTGATCCC
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Coding sequence (CDS) from alignment at NODE_1191_length_12841_cov_4.930980:3298..4622-

>Gcaud3096.t1 ID=Gcaud3096.t1|Name=Gcaud3096.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1164bp|location=Sequence derived from alignment at NODE_1191_length_12841_cov_4.930980:3298..4622- (Gracilaria caudata M_176_S67 male)
ATGTCCCCTTCGTATTCGTCGCGATGCTCTCTCGCGCCATTTTCTCATCA
TGACGACTGTTCTGGTACTGCTGACTGCGTCGCCCCCCGAATGTGCTTCA
ATTGCGCCGAACCTAAATGCTATTGCGTAAAGCCCCCACCGCACGCAAAC
ATTACCTGTTCTTCTTCCAGCGACTGTGACCCGGGAGAGTTCTGTTTTTG
GGATCTTCAGGTCGGTCTCACTTCTGGAACCTGTCTGTCCTCTCGTTACT
TTGGCAGTTTGAACGAAACCTTTCCAATTCTTCATAAGCCCATCAACTAC
GCTCCCCCAGCCCACTCCTTTGGTCTCACCGGCGACCGATGCTTCTTCCA
TGAGGACTGTATGGGAACACGCAGTTGTATGGCTCGCAAAAGCTTCGTTT
TTGAACTGAGAAATGTTTCCACGTGCGAGGTCTCGGCGTCTTCTTGCGTT
TGTACGCCTCCTAGTTACACGGAATGCGAATCTGCTTCAGACTGCGACCA
TCCGAATGAGATCTGTGCGTCAGTGTTGTTCCAGCTTTCGGACACTATCA
CTTTCGAGGACATAGAGTCTGATCAGAAGGCGAGCCTCACTCCTGTTTGT
ATTTCGTCCAACCTCACGCGATATGACAATGTTCTTCCTCTATCACACAC
AAATTTCTCATCCTTTATCTCAGGAACGTCTGCAGCGGAGATACGCCTTT
TACCACGAGCGCCTTCAATGATTCTGCCGGCTCCTCAGCGCATAGATCCG
GAGTTGGTACCATTCTCAGTGTCTGGACTGTCTGTGTTCAATACCTTCAC
CACCAACGAGCTGTTAAACGAATTCATTGGTGGAATCCTGTCTTTGATTA
TTGTGGCCCAACTCCACAAGATTTTGCAAGGTTTGGTTTATTCCAAAATG
GGTATCCATCATCATGGCTACTCCAGGTACATCATGTATTCGAGGCTATC
TAGTTTCCGACACGTTTCCCGAATCTTAGGCGGACGCGAACCGTTTCAGA
AGGGCAAAGCATCTTCTCCCCGACAAAGCCTTTCTACGTTGAACTACAAG
CTGGCGATTGTTCCATTTCTGGCATTTCTTTTTCTCATCGGCGCTGAGGT
GACAACTATCATGGCAGGAACAGACGCACGTGTGGAGTCGTTCGCTGACC
AGAACTTTGATCCC
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