Gcaud3095.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3095.t1
Unique Name	Gcaud3095.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	254

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_399_length_26728_cov_5.124564	contig	NODE_399_length_26728_cov_5.124564:19530..21586 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3095	Gcaud3095	Gracilaria caudata M_176_S67 male	gene	NODE_399_length_26728_cov_5.124564 19530..21586 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3095.t1	Gcaud3095.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_399_length_26728_cov_5.124564 19530..21586 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3095.t1.start1	Gcaud3095.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_399_length_26728_cov_5.124564 19530..19532 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3095.t1.CDS1	Gcaud3095.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_399_length_26728_cov_5.124564 19530..19703 +
Gcaud3095.t1.CDS2	Gcaud3095.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_399_length_26728_cov_5.124564 20999..21586 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3095.t1.exon1	Gcaud3095.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_399_length_26728_cov_5.124564 19530..19703 +
Gcaud3095.t1.exon2	Gcaud3095.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_399_length_26728_cov_5.124564 20999..21586 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3095.t1.intron1	Gcaud3095.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_399_length_26728_cov_5.124564 19704..20998 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3095.t1.stop1	Gcaud3095.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_399_length_26728_cov_5.124564 21584..21586 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_399_length_26728_cov_5.124564:19530..21586+
coding sequence from alignment at NODE_399_length_26728_cov_5.124564:19530..21586+

mRNA sequence

>Gcaud3095.t1 ID=Gcaud3095.t1|Name=Gcaud3095.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=254bp
MQKLDAVVLLLRIGLNLKQASVFQSNLWPAKNLMGFVFHEVWSAIEIFFF
GLRDLDSGWGSAGGRDGQNGVPGPVSGGNFREMPDSVAGDEAVPTNGDGR
AMSGHVQASAEEHGEEIVHSNGDAHSSHSEMAYGSQDDVFQSDDLNENAS
QSCQDCEEITPAVVRTAGSRRGGNRTQGNGPHLSRKRTEVEPINRDQDES
NRQKRRRKKSKNARSRSNVTSSNQNNQQRPSHMSRHASSGRSRAVGSRTH
HRQ*

spliced messenger RNA

>Gcaud3095.t1 ID=Gcaud3095.t1|Name=Gcaud3095.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=762bp|location=Sequence derived from alignment at NODE_399_length_26728_cov_5.124564:19530..21586+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAAGTTGGATGCTGTCGTGCTACTTCTCCGTATTGGACTGAATCT
GAAGCAGGCAAGTGTGTTTCAGAGCAATTTATGGCCGGCAAAGAACCTGA
TGGGTTTCGTGTTCCATGAGGTGTGGTCTGCCATCGAAATCTTCTTCTTT
GGTTTGAGAGATTTGGATTCTGGGTGGGGATCGGCAGGAGGCAGAGACGG
CCAGAATGGTGTCCCCGGGCCGGTGTCTGGTGGCAACTTTCGGGAAATGC
CTGATTCCGTGGCCGGTGATGAAGCAGTTCCTACTAATGGTGATGGTCGA
GCTATGAGCGGTCATGTCCAAGCGTCAGCTGAAGAACATGGTGAAGAGAT
TGTTCACTCAAACGGTGATGCGCATTCGAGTCATTCAGAGATGGCTTATG
GATCTCAAGATGATGTATTCCAAAGCGATGACCTTAATGAAAATGCGTCT
CAGTCGTGCCAAGACTGTGAAGAAATTACCCCTGCGGTTGTGCGAACTGC
AGGTTCTCGACGTGGCGGGAATCGTACTCAGGGAAATGGTCCCCACTTGA
GCCGCAAACGGACTGAAGTTGAGCCCATCAATCGCGACCAGGATGAATCC
AACCGTCAGAAGCGTCGGCGCAAGAAGTCAAAGAACGCTCGATCCCGTTC
GAATGTCACATCCAGCAACCAGAACAATCAACAAAGACCATCTCATATGT
CTCGCCATGCTTCATCCGGACGTTCTCGTGCGGTTGGCTCCCGCACGCAT
CATCGTCAGTAG

protein sequence of Gcaud3095.t1

>Gcaud3095.t1 ID=Gcaud3095.t1|Name=Gcaud3095.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=254bp
MQKLDAVVLLLRIGLNLKQASVFQSNLWPAKNLMGFVFHEVWSAIEIFFF
GLRDLDSGWGSAGGRDGQNGVPGPVSGGNFREMPDSVAGDEAVPTNGDGR
AMSGHVQASAEEHGEEIVHSNGDAHSSHSEMAYGSQDDVFQSDDLNENAS
QSCQDCEEITPAVVRTAGSRRGGNRTQGNGPHLSRKRTEVEPINRDQDES
NRQKRRRKKSKNARSRSNVTSSNQNNQQRPSHMSRHASSGRSRAVGSRTH
HRQ*

mRNA from alignment at NODE_399_length_26728_cov_5.124564:19530..21586+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3095.t1 ID=Gcaud3095.t1|Name=Gcaud3095.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2057bp|location=Sequence derived from alignment at NODE_399_length_26728_cov_5.124564:19530..21586+ (Gracilaria caudata M_176_S67 male)
ATGCAAAAGTTGGATGCTGTCGTGCTACTTCTCCGTATTGGACTGAATCT
GAAGCAGGCAAGTGTGTTTCAGAGCAATTTATGGCCGGCAAAGAACCTGA
TGGGTTTCGTGTTCCATGAGGTGTGGTCTGCCATCGAAATCTTCTTCTTT
GGTTTGAGAGATTTGGATTCTGGGGTATGTCTTCTACATTGCTTTGCTCA
TCACTTTCCCCATTATCTGCTCTTTCCATGGGCTGGGTAATCTCCCATCT
TCTCTTTCTTACCCGTCGATAATTTTCTTCTCCTTCCATTCAAAACGATA
AATGTCCCTCGCTTTTAATGTGTTTGGCCGGAGTAGAAGCTCTTGCCCTT
CCTTTGAGATGCAAATACTGCGACGATGCCTCCTCATGTAATCCGAGTGT
GAGAAACTTTTCGCAGATATTGGAAATTGGTCATTATTTTCTGTAGATCC
ATTCCGGAATATTTTGAAACAGATCAACGGCAACTACTCCCGCTTCATCA
CGTGATAGTTTTCGCTTCACCTCACCTCGATGAGACAGAAACGGCGCCAG
AAGAGTGATCCACGGCTTCCCGCCCATCGCCTCCCGTGCAGTTCGATACA
TAAGCGCTTCGTTCCGCTTCCTCCGACGACAATGGGTATACCTGGTACCA
TTCCTTCCACTCTCATCCATTTCCTCTTTTGGTTCAGCCATTCTAGCGAC
GCCCTCCTACTGAACCCGGTCAAGCGGTGCAGAGACTCACATCTTTGCAG
TCTAAACCTTCCTCATACATCCAGTACGTTGTCCTGTCTGCTTTGCTGCG
AGCACATCGCCTAACCTTTCCAAACAAACTTTGTTATGGATACTGAAATC
ATCCCTATCCTGTTATCCGAAGTATGACATGACTTCCCGCCAAATCCCCA
GCGTCTCTGTCGACCGTTCCGTAACTGCTGCTCAAGCAGCGACCATGCCC
CATAGTTCTTCTCCTCCCAATCAAGTTCCTCCTCAATGCATCCCCATTCC
AACAGCTATGAATCGTCggaaaatgaaagaggctgacaggaacggcagac
ccacaggagccgtaatctctgcaaagctagtttttaatcgtctgttccgt
gagcgatttccagactggatagactacgcgaggacaggggataacgaaga
ctcggacaacaatgtggaccatgatcagttcccaatctacctcgagatgg
caaatgccgtcaaagatatgacacgtcagtttctttaccataagatgggt
ctgactcgtggcgcccgtaatttccgttctgtgaaaattgagtacgcctc
tcagcttttgcagctaaagcaaaaggttgtgaaggcctttccagttcttg
gagctgcccaaaattattggatagttaccgattttgtgaaggaggcaatg
cagagagacaagaaggcagtgaaggaagcgacgaagaggactaacgctcc
cgttaaTGTTGCTATCGAGTGGGGATCGGCAGGAGGCAGAGACGGCCAGA
ATGGTGTCCCCGGGCCGGTGTCTGGTGGCAACTTTCGGGAAATGCCTGAT
TCCGTGGCCGGTGATGAAGCAGTTCCTACTAATGGTGATGGTCGAGCTAT
GAGCGGTCATGTCCAAGCGTCAGCTGAAGAACATGGTGAAGAGATTGTTC
ACTCAAACGGTGATGCGCATTCGAGTCATTCAGAGATGGCTTATGGATCT
CAAGATGATGTATTCCAAAGCGATGACCTTAATGAAAATGCGTCTCAGTC
GTGCCAAGACTGTGAAGAAATTACCCCTGCGGTTGTGCGAACTGCAGGTT
CTCGACGTGGCGGGAATCGTACTCAGGGAAATGGTCCCCACTTGAGCCGC
AAACGGACTGAAGTTGAGCCCATCAATCGCGACCAGGATGAATCCAACCG
TCAGAAGCGTCGGCGCAAGAAGTCAAAGAACGCTCGATCCCGTTCGAATG
TCACATCCAGCAACCAGAACAATCAACAAAGACCATCTCATATGTCTCGC
CATGCTTCATCCGGACGTTCTCGTGCGGTTGGCTCCCGCACGCATCATCG
TCAGTAG

Coding sequence (CDS) from alignment at NODE_399_length_26728_cov_5.124564:19530..21586+

>Gcaud3095.t1 ID=Gcaud3095.t1|Name=Gcaud3095.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=762bp|location=Sequence derived from alignment at NODE_399_length_26728_cov_5.124564:19530..21586+ (Gracilaria caudata M_176_S67 male)
ATGCAAAAGTTGGATGCTGTCGTGCTACTTCTCCGTATTGGACTGAATCT
GAAGCAGGCAAGTGTGTTTCAGAGCAATTTATGGCCGGCAAAGAACCTGA
TGGGTTTCGTGTTCCATGAGGTGTGGTCTGCCATCGAAATCTTCTTCTTT
GGTTTGAGAGATTTGGATTCTGGGTGGGGATCGGCAGGAGGCAGAGACGG
CCAGAATGGTGTCCCCGGGCCGGTGTCTGGTGGCAACTTTCGGGAAATGC
CTGATTCCGTGGCCGGTGATGAAGCAGTTCCTACTAATGGTGATGGTCGA
GCTATGAGCGGTCATGTCCAAGCGTCAGCTGAAGAACATGGTGAAGAGAT
TGTTCACTCAAACGGTGATGCGCATTCGAGTCATTCAGAGATGGCTTATG
GATCTCAAGATGATGTATTCCAAAGCGATGACCTTAATGAAAATGCGTCT
CAGTCGTGCCAAGACTGTGAAGAAATTACCCCTGCGGTTGTGCGAACTGC
AGGTTCTCGACGTGGCGGGAATCGTACTCAGGGAAATGGTCCCCACTTGA
GCCGCAAACGGACTGAAGTTGAGCCCATCAATCGCGACCAGGATGAATCC
AACCGTCAGAAGCGTCGGCGCAAGAAGTCAAAGAACGCTCGATCCCGTTC
GAATGTCACATCCAGCAACCAGAACAATCAACAAAGACCATCTCATATGT
CTCGCCATGCTTCATCCGGACGTTCTCGTGCGGTTGGCTCCCGCACGCAT
CATCGTCAGTAG