Gcaud3092.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3092.t1
Unique Name	Gcaud3092.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	439

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_399_length_26728_cov_5.124564	contig	NODE_399_length_26728_cov_5.124564:655..1971 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3092	Gcaud3092	Gracilaria caudata M_176_S67 male	gene	NODE_399_length_26728_cov_5.124564 655..1971 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3092.t1.start1	Gcaud3092.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_399_length_26728_cov_5.124564 655..657 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3092.t1.CDS1	Gcaud3092.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_399_length_26728_cov_5.124564 655..1971 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3092.t1.exon1	Gcaud3092.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_399_length_26728_cov_5.124564 655..1971 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3092.t1.stop1	Gcaud3092.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_399_length_26728_cov_5.124564 1969..1971 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3092.t1	Gcaud3092.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_399_length_26728_cov_5.124564 655..1971 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_399_length_26728_cov_5.124564:655..1971+
coding sequence from alignment at NODE_399_length_26728_cov_5.124564:655..1971+

mRNA sequence

>Gcaud3092.t1 ID=Gcaud3092.t1|Name=Gcaud3092.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=439bp
MRGLSNVWSDLKEKEEYIVDSSTLIYTLSYKHIPVDHEGGTTRLSEARAS
DILQKLMDTAKSHGYNRIMVWCDGASSAGVRTDKSWVDIGLLPYAIYRTF
RVNTFVQGESLMSSRLWLDLEKTLSSLTCGMDVIDEYIDDNDVSYHAVEN
ITGNGHKAMDSVIRLSSRIVQGDYDSSAVSWEADKSEIVTWAKRILMRSG
LKEMNEALGWSGDPSRARQAKAVLMRVSSLTLRTSSEDCAAEVAKVCTQD
DAREAYREGMANDTELQTEANRTEFWLRLLRFTEEEIGNLENEDLELTSY
RFEEKDSGIWQAHVVSLQGDYYISMSHFENVEPKSWRRWRPETGVWSTER
AYPRDQWLVTNSQVEKSGEIDEWARKMIAEMFRTRGRECTVLSVESEDAE
TGSTEDTAVGWFVGNMGEAATWMSYFAARMRERNRQVE*

spliced messenger RNA

>Gcaud3092.t1 ID=Gcaud3092.t1|Name=Gcaud3092.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at NODE_399_length_26728_cov_5.124564:655..1971+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGGCTTAAGCAATGTATGGAGCGATTTGAAAGAAAAGGAAGAATA
TATCGTTGACTCATCAACTTTGATCTATACTTTGTCGTACAAGCATATAC
CCGTTGATCATGAAGGTGGAACGACACGGTTAAGCGAGGCTAGAGCTTCT
GACATACTTCAAAAGTTGATGGATACAGCGAAAAGTCATGGCTACAACAG
AATTATGGTGTGGTGTGATGGTGCTTCTTCTGCTGGAGTACGCACGGACA
AGTCGTGGGTAGATATTGGGCTTTTGCCATATGCAATTTACAGGACGTTT
AGAGTGAACACTTTTGTGCAAGGAGAGAGCTTGATGTCAAGTCGTCTTTG
GCTCGACTTGGAAAAGACATTATCGAGTCTAACCTGCGGGATGGATGTCA
TAGACGAGTACATCGATGACAATGATGTTTCCTATCACGCGGTGGAGAAT
ATCACCGGCAACGGACACAAAGCAATGGATTCTGTGATTCGTCTGTCGTC
TAGAATCGTGCAAGGTGACTATGACTCATCAGCTGTATCATGGGAGGCCG
ATAAGAGCGAGATTGTAACATGGGCTAAAAGGATCCTGATGCGATCTGGC
TTGAAGGAGATGAACGAGGCTCTCGGATGGTCAGGAGACCCTTCTAGAGC
TCGTCAGGCGAAAGCAGTGCTCATGAGAGTTTCGAGCTTGACTCTACGAA
CATCTAGCGAAGACTGTGCAGCAGAGGTCGCTAAAGTTTGCACACAGGAC
GATGCAAGAGAGGCATATCGGGAGGGAATGGCGAATGATACAGAATTGCA
AACAGAAGCGAATCGTACAGAGTTCTGGTTGAGACTGCTACGATTCACAG
AAGAAGAAATTGGAAACCTGGAGAACGAGGATTTAGAGCTGACGTCATAC
CGGTTTGAAGAGAAAGACAGTGGGATTTGGCAAGCACATGTGGTGAGCCT
ACAAGGTGATTACTACATCAGTATGTCGCACTTCGAGAATGTTGAGCCGA
AAAGTTGGCGGCGATGGCGCCCAGAAACTGGTGTTTGGAGTACGGAACGG
GCGTACCCGAGAGATCAGTGGTTGGTGACCAACTCTCAGGTGGAGAAGAG
CGGAGAGATTGACGAATGGGCGAGAAAGATGATTGCAGAAATGTTCAGGA
CTCGAGGACGAGAGTGTACAGTGCTAAGCGTGGAGTCAGAAGACGCAGAA
ACTGGTAGCACCGAAGACACTGCCGTGGGGTGGTTCGTCGGCAATATGGG
GGAGGCTGCTACATGGATGAGCTATTTTGCTGCGAGGATGAGAGAAAGAA
ATCGACAAGTCGAGTAG

protein sequence of Gcaud3092.t1

>Gcaud3092.t1 ID=Gcaud3092.t1|Name=Gcaud3092.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=439bp
MRGLSNVWSDLKEKEEYIVDSSTLIYTLSYKHIPVDHEGGTTRLSEARAS
DILQKLMDTAKSHGYNRIMVWCDGASSAGVRTDKSWVDIGLLPYAIYRTF
RVNTFVQGESLMSSRLWLDLEKTLSSLTCGMDVIDEYIDDNDVSYHAVEN
ITGNGHKAMDSVIRLSSRIVQGDYDSSAVSWEADKSEIVTWAKRILMRSG
LKEMNEALGWSGDPSRARQAKAVLMRVSSLTLRTSSEDCAAEVAKVCTQD
DAREAYREGMANDTELQTEANRTEFWLRLLRFTEEEIGNLENEDLELTSY
RFEEKDSGIWQAHVVSLQGDYYISMSHFENVEPKSWRRWRPETGVWSTER
AYPRDQWLVTNSQVEKSGEIDEWARKMIAEMFRTRGRECTVLSVESEDAE
TGSTEDTAVGWFVGNMGEAATWMSYFAARMRERNRQVE*

mRNA from alignment at NODE_399_length_26728_cov_5.124564:655..1971+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3092.t1 ID=Gcaud3092.t1|Name=Gcaud3092.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at NODE_399_length_26728_cov_5.124564:655..1971+ (Gracilaria caudata M_176_S67 male)
ATGAGAGGCTTAAGCAATGTATGGAGCGATTTGAAAGAAAAGGAAGAATA
TATCGTTGACTCATCAACTTTGATCTATACTTTGTCGTACAAGCATATAC
CCGTTGATCATGAAGGTGGAACGACACGGTTAAGCGAGGCTAGAGCTTCT
GACATACTTCAAAAGTTGATGGATACAGCGAAAAGTCATGGCTACAACAG
AATTATGGTGTGGTGTGATGGTGCTTCTTCTGCTGGAGTACGCACGGACA
AGTCGTGGGTAGATATTGGGCTTTTGCCATATGCAATTTACAGGACGTTT
AGAGTGAACACTTTTGTGCAAGGAGAGAGCTTGATGTCAAGTCGTCTTTG
GCTCGACTTGGAAAAGACATTATCGAGTCTAACCTGCGGGATGGATGTCA
TAGACGAGTACATCGATGACAATGATGTTTCCTATCACGCGGTGGAGAAT
ATCACCGGCAACGGACACAAAGCAATGGATTCTGTGATTCGTCTGTCGTC
TAGAATCGTGCAAGGTGACTATGACTCATCAGCTGTATCATGGGAGGCCG
ATAAGAGCGAGATTGTAACATGGGCTAAAAGGATCCTGATGCGATCTGGC
TTGAAGGAGATGAACGAGGCTCTCGGATGGTCAGGAGACCCTTCTAGAGC
TCGTCAGGCGAAAGCAGTGCTCATGAGAGTTTCGAGCTTGACTCTACGAA
CATCTAGCGAAGACTGTGCAGCAGAGGTCGCTAAAGTTTGCACACAGGAC
GATGCAAGAGAGGCATATCGGGAGGGAATGGCGAATGATACAGAATTGCA
AACAGAAGCGAATCGTACAGAGTTCTGGTTGAGACTGCTACGATTCACAG
AAGAAGAAATTGGAAACCTGGAGAACGAGGATTTAGAGCTGACGTCATAC
CGGTTTGAAGAGAAAGACAGTGGGATTTGGCAAGCACATGTGGTGAGCCT
ACAAGGTGATTACTACATCAGTATGTCGCACTTCGAGAATGTTGAGCCGA
AAAGTTGGCGGCGATGGCGCCCAGAAACTGGTGTTTGGAGTACGGAACGG
GCGTACCCGAGAGATCAGTGGTTGGTGACCAACTCTCAGGTGGAGAAGAG
CGGAGAGATTGACGAATGGGCGAGAAAGATGATTGCAGAAATGTTCAGGA
CTCGAGGACGAGAGTGTACAGTGCTAAGCGTGGAGTCAGAAGACGCAGAA
ACTGGTAGCACCGAAGACACTGCCGTGGGGTGGTTCGTCGGCAATATGGG
GGAGGCTGCTACATGGATGAGCTATTTTGCTGCGAGGATGAGAGAAAGAA
ATCGACAAGTCGAGTAG

Coding sequence (CDS) from alignment at NODE_399_length_26728_cov_5.124564:655..1971+

>Gcaud3092.t1 ID=Gcaud3092.t1|Name=Gcaud3092.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1317bp|location=Sequence derived from alignment at NODE_399_length_26728_cov_5.124564:655..1971+ (Gracilaria caudata M_176_S67 male)
ATGAGAGGCTTAAGCAATGTATGGAGCGATTTGAAAGAAAAGGAAGAATA
TATCGTTGACTCATCAACTTTGATCTATACTTTGTCGTACAAGCATATAC
CCGTTGATCATGAAGGTGGAACGACACGGTTAAGCGAGGCTAGAGCTTCT
GACATACTTCAAAAGTTGATGGATACAGCGAAAAGTCATGGCTACAACAG
AATTATGGTGTGGTGTGATGGTGCTTCTTCTGCTGGAGTACGCACGGACA
AGTCGTGGGTAGATATTGGGCTTTTGCCATATGCAATTTACAGGACGTTT
AGAGTGAACACTTTTGTGCAAGGAGAGAGCTTGATGTCAAGTCGTCTTTG
GCTCGACTTGGAAAAGACATTATCGAGTCTAACCTGCGGGATGGATGTCA
TAGACGAGTACATCGATGACAATGATGTTTCCTATCACGCGGTGGAGAAT
ATCACCGGCAACGGACACAAAGCAATGGATTCTGTGATTCGTCTGTCGTC
TAGAATCGTGCAAGGTGACTATGACTCATCAGCTGTATCATGGGAGGCCG
ATAAGAGCGAGATTGTAACATGGGCTAAAAGGATCCTGATGCGATCTGGC
TTGAAGGAGATGAACGAGGCTCTCGGATGGTCAGGAGACCCTTCTAGAGC
TCGTCAGGCGAAAGCAGTGCTCATGAGAGTTTCGAGCTTGACTCTACGAA
CATCTAGCGAAGACTGTGCAGCAGAGGTCGCTAAAGTTTGCACACAGGAC
GATGCAAGAGAGGCATATCGGGAGGGAATGGCGAATGATACAGAATTGCA
AACAGAAGCGAATCGTACAGAGTTCTGGTTGAGACTGCTACGATTCACAG
AAGAAGAAATTGGAAACCTGGAGAACGAGGATTTAGAGCTGACGTCATAC
CGGTTTGAAGAGAAAGACAGTGGGATTTGGCAAGCACATGTGGTGAGCCT
ACAAGGTGATTACTACATCAGTATGTCGCACTTCGAGAATGTTGAGCCGA
AAAGTTGGCGGCGATGGCGCCCAGAAACTGGTGTTTGGAGTACGGAACGG
GCGTACCCGAGAGATCAGTGGTTGGTGACCAACTCTCAGGTGGAGAAGAG
CGGAGAGATTGACGAATGGGCGAGAAAGATGATTGCAGAAATGTTCAGGA
CTCGAGGACGAGAGTGTACAGTGCTAAGCGTGGAGTCAGAAGACGCAGAA
ACTGGTAGCACCGAAGACACTGCCGTGGGGTGGTTCGTCGGCAATATGGG
GGAGGCTGCTACATGGATGAGCTATTTTGCTGCGAGGATGAGAGAAAGAA
ATCGACAAGTCGAGTAG