Gcaud3086.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3086.t1
Unique NameGcaud3086.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length759
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_143_length_44032_cov_4.581120contigNODE_143_length_44032_cov_4.581120:21183..23615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS469CT
PFAMsPkinase,Pkinase_Tyr
Max annot lvl2759|Eukaryota
KEGG koko:K04419
KEGG Pathwayko04010,ko04932,map04010,map04932
KEGG ModuleM00688,M00689
Evalue6.48e-83
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
EC2.7.11.25
Descriptionprotein kinase activity
COG categoryKLT
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3086Gcaud3086Gracilaria caudata M_176_S67 malegeneNODE_143_length_44032_cov_4.581120 21183..23615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3086.t1Gcaud3086.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_143_length_44032_cov_4.581120 21183..23615 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3086.t1.stop1Gcaud3086.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_143_length_44032_cov_4.581120 21183..21185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3086.t1.CDS1Gcaud3086.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_143_length_44032_cov_4.581120 21183..21851 -
Gcaud3086.t1.CDS2Gcaud3086.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_143_length_44032_cov_4.581120 21919..21990 -
Gcaud3086.t1.CDS3Gcaud3086.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_143_length_44032_cov_4.581120 22080..23615 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3086.t1.exon1Gcaud3086.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_143_length_44032_cov_4.581120 21183..21851 -
Gcaud3086.t1.exon2Gcaud3086.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_143_length_44032_cov_4.581120 21919..21990 -
Gcaud3086.t1.exon3Gcaud3086.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_143_length_44032_cov_4.581120 22080..23615 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3086.t1.intron1Gcaud3086.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_143_length_44032_cov_4.581120 21852..21918 -
Gcaud3086.t1.intron2Gcaud3086.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_143_length_44032_cov_4.581120 21991..22079 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3086.t1.start1Gcaud3086.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_143_length_44032_cov_4.581120 23613..23615 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3086.t1 ID=Gcaud3086.t1|Name=Gcaud3086.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=759bp
MCKMNLHEFSTPLPNGITVHHLELHNLSVREQRPIIEFECTGDDDEHEFV
LTVFGRERAGLLADLTDYLESIALGVKQANIYSFPNGAVMDQFTLADPNR
LLLDDEMLVSIHDTLVKLIGNDGASLSRRARLRMHFDNHSPQAKDSLYNY
ALLRHRVPITLLAPRFAPRATIVRRTWSNIALTEMVEEQKQELERQHRDS
EAVTADLVQHALSTLEEGEYLYHYSSDTRYRHKFNISEDHRYLCWGDSCA
ARLSRYAGVLFGPKSAVFQDLGPRLVDPEWLCFSLVSNPTSHSATSVDTI
DLVCVSVDQLNRWLLGLQSLCNPDNRQLLHRLTLDDITRFRVIYKIRAHA
HARGLTVRRYILKRVAEAGQRRSSADANRAQLDEVCQLEAELARLQKTLI
DYARRETMLNTSLRDFQVSWEVNVSDVELVHPIGRGAFSEMWKGMWRSTP
VAVKKLTTRTVTGDILNSDQPDDFRVGERRIPSADTLGNTGISPEDREML
KDFRLEVSMLNKFVCSVEETIMETMPVAAGFAKCCENLLLDRPVEDGCPV
VKVADFGLSRQFRGIGTVTGSVAGVMTSETGTYRWMAPEMIRHEPYNDKV
DVYSFGIVLWELFSCEIPFASMTPVQAAFAVADKHLRPKAESEYARRVQI
PTAWDALIERCWHRDSHERPRFNEVLRVLDEMESCAEEEVPRSLMRYSAA
ERKELGNWRKGAQGGIDVKRFQVQVTREDAEGRSRSDDATHEKTGLQHSG
SAPNLAHM*
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spliced messenger RNA

>Gcaud3086.t1 ID=Gcaud3086.t1|Name=Gcaud3086.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2277bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:21183..23615- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAAGATGAATCTTCACGAGTTCTCTACGCCGTTGCCGAATGGGAT
TACTGTGCATCATCTCGAGTTACATAACCTCTCGGTGAGGGAGCAGCGTC
CTATCATTGAGTTTGAGTGCACTGGTGATGACGATGAGCATGAGTTCGTG
CTCACCGTGTTCGGCCGCGAACGCGCCGGTTTGTTGGCCGATCTTACCGA
CTATCTCGAGTCTATTGCGCTCGGAGTCAAACAGGCTAACATCTATTCCT
TTCCGAATGGCGCCGTTATGGACCAGTTCACTCTGGCTGATCCGAATAGA
TTGCTGCTGGATGATGAGATGCTCGTCAGCATTCATGACACACTTGTCAA
GCTCATCGGCAATGATGGTGCCTCGTTGTCGCGCCGTGCCCGGTTAAGAA
TGCACTTCGACAATCATTCACCTCAGGCAAAGGATTCTCTTTATAACTAT
GCTTTGTTGCGACATCGCGTTCCGATCACCCTGCTTGCGCCCCGATTCGC
GCCACGTGCAACCATCGTAAGAAGGACCTGGTCCAACATCGCTCTTACTG
AGATGGTTGAGGAACAGAAACAAGAGCTCGAGAGACAGCACAGAGACAGC
GAGGCAGTGACAGCCGATTTGGTGCAGCATGCATTATCAACCCTGGAGGA
AGGCGAATATCTTTATCATTACTCGTCTGATACGCGATACCGACACAAAT
TCAACATCTCCGAGGATCATCGGTATTTATGCTGGGGTGATTCCTGCGCT
GCTCGTCTTAGTCGATACGCAGGCGTTTTGTTCGGACCCAAGTCTGCCGT
CTTTCAAGACCTGGGTCCCAGACTTGTTGATCCAGAGTGGCTCTGCTTTT
CGCTCGTCAGTAACCCGACCAGCCATTCGGCAACTAGCGTTGATACCATT
GATCTCGTATGCGTTTCCGTGGACCAGTTGAATCGGTGGTTGCTCGGGCT
GCAATCGCTATGCAATCCAGACAATCGTCAACTGTTGCATCGCCTTACTC
TCGACGATATTACTAGATTTCGTGTTATATATAAGATTCGTGCCCATGCT
CATGCGAGGGGGCTAACCGTTCGAAGGTATATTTTGAAGAGAGTTGCTGA
AGCTGGACAGAGGAGAAGTTCTGCGGATGCTAATCGTGCGCAGTTGGATG
AAGTTTGCCAACTTGAGGCTGAATTGGCGCGTTTGCAGAAGACGCTTATC
GATTATGCACGCCGTGAGACGATGCTTAACACGTCGCTTAGAGATTTTCA
AGTTTCTTGGGAGGTTAACGTAAGTGATGTTGAACTGGTACATCCCATTG
GACGCGGAGCTTTCTCGGAAATGTGGAAGGGTATGTGGCGTTCTACTCCC
GTCGCTGTCAAAAAGCTCACTACAAGAACCGTCACAGGAGACATTCTCAA
TAGTGATCAACCTGATGACTTTCGCGTTGGAGAACGCCGTATCCCTTCGG
CAGATACTCTAGGAAACACTGGTATATCCCCCGAAGATAGGGAGATGTTG
AAAGATTTCCGACTTGAAGTTTCAATGCTCAACAAATTTGTTTGCAGCGT
TGAGGAAACGATCATGGAGACAATGCCTGTCGCTGCAGGATTTGCGAAAT
GTTGCGAGAATCTCCTTCTCGATAGACCTGTCGAAGACGGGTGCCCTGTT
GTCAAAGTCGCTGATTTTGGACTAAGTAGACAGTTTCGAGGAATTGGAAC
TGTTACGGGCTCGGTGGCTGGAGTCATGACTAGTGAAACTGGAACATATC
GCTGGATGGCACCTGAGATGATCCGCCACGAACCTTATAATGACAAAGTT
GATGTATACTCTTTTGGGATTGTGCTGTGGGAGTTGTTCTCGTGTGAAAT
TCCGTTCGCGAGCATGACGCCCGTACAAGCGGCTTTTGCGGTTGCTGACA
AACACCTTAGACCTAAAGCAGAGTCAGAATACGCAAGAAGAGTACAGATA
CCAACTGCATGGGATGCACTGATCGAACGTTGTTGGCACCGTGACTCTCA
TGAACGGCCACGTTTCAATGAGGTTTTAAGAGTGTTAGATGAAATGGAGA
GCTGTGCGGAAGAGGAGGTTCCTCGATCGCTAATGAGATATTCAGCTGCA
GAGAGAAAAGAGCTCGGAAACTGGAGGAAGGGCGCCCAAGGAGGTATTGA
TGTGAAACGATTTCAAGTTCAAGTTACACGGGAAGATGCAGAAGGGCGTT
CCAGAAGCGATGACGCAACACATGAAAAAACCGGCTTGCAGCATTCGGGA
AGTGCACCAAATCTGGCACATATGTAA
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protein sequence of Gcaud3086.t1

>Gcaud3086.t1 ID=Gcaud3086.t1|Name=Gcaud3086.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=759bp
MCKMNLHEFSTPLPNGITVHHLELHNLSVREQRPIIEFECTGDDDEHEFV
LTVFGRERAGLLADLTDYLESIALGVKQANIYSFPNGAVMDQFTLADPNR
LLLDDEMLVSIHDTLVKLIGNDGASLSRRARLRMHFDNHSPQAKDSLYNY
ALLRHRVPITLLAPRFAPRATIVRRTWSNIALTEMVEEQKQELERQHRDS
EAVTADLVQHALSTLEEGEYLYHYSSDTRYRHKFNISEDHRYLCWGDSCA
ARLSRYAGVLFGPKSAVFQDLGPRLVDPEWLCFSLVSNPTSHSATSVDTI
DLVCVSVDQLNRWLLGLQSLCNPDNRQLLHRLTLDDITRFRVIYKIRAHA
HARGLTVRRYILKRVAEAGQRRSSADANRAQLDEVCQLEAELARLQKTLI
DYARRETMLNTSLRDFQVSWEVNVSDVELVHPIGRGAFSEMWKGMWRSTP
VAVKKLTTRTVTGDILNSDQPDDFRVGERRIPSADTLGNTGISPEDREML
KDFRLEVSMLNKFVCSVEETIMETMPVAAGFAKCCENLLLDRPVEDGCPV
VKVADFGLSRQFRGIGTVTGSVAGVMTSETGTYRWMAPEMIRHEPYNDKV
DVYSFGIVLWELFSCEIPFASMTPVQAAFAVADKHLRPKAESEYARRVQI
PTAWDALIERCWHRDSHERPRFNEVLRVLDEMESCAEEEVPRSLMRYSAA
ERKELGNWRKGAQGGIDVKRFQVQVTREDAEGRSRSDDATHEKTGLQHSG
SAPNLAHM*
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mRNA from alignment at NODE_143_length_44032_cov_4.581120:21183..23615-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3086.t1 ID=Gcaud3086.t1|Name=Gcaud3086.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2433bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:21183..23615- (Gracilaria caudata M_176_S67 male)
ATGTGCAAGATGAATCTTCACGAGTTCTCTACGCCGTTGCCGAATGGGAT
TACTGTGCATCATCTCGAGTTACATAACCTCTCGGTGAGGGAGCAGCGTC
CTATCATTGAGTTTGAGTGCACTGGTGATGACGATGAGCATGAGTTCGTG
CTCACCGTGTTCGGCCGCGAACGCGCCGGTTTGTTGGCCGATCTTACCGA
CTATCTCGAGTCTATTGCGCTCGGAGTCAAACAGGCTAACATCTATTCCT
TTCCGAATGGCGCCGTTATGGACCAGTTCACTCTGGCTGATCCGAATAGA
TTGCTGCTGGATGATGAGATGCTCGTCAGCATTCATGACACACTTGTCAA
GCTCATCGGCAATGATGGTGCCTCGTTGTCGCGCCGTGCCCGGTTAAGAA
TGCACTTCGACAATCATTCACCTCAGGCAAAGGATTCTCTTTATAACTAT
GCTTTGTTGCGACATCGCGTTCCGATCACCCTGCTTGCGCCCCGATTCGC
GCCACGTGCAACCATCGTAAGAAGGACCTGGTCCAACATCGCTCTTACTG
AGATGGTTGAGGAACAGAAACAAGAGCTCGAGAGACAGCACAGAGACAGC
GAGGCAGTGACAGCCGATTTGGTGCAGCATGCATTATCAACCCTGGAGGA
AGGCGAATATCTTTATCATTACTCGTCTGATACGCGATACCGACACAAAT
TCAACATCTCCGAGGATCATCGGTATTTATGCTGGGGTGATTCCTGCGCT
GCTCGTCTTAGTCGATACGCAGGCGTTTTGTTCGGACCCAAGTCTGCCGT
CTTTCAAGACCTGGGTCCCAGACTTGTTGATCCAGAGTGGCTCTGCTTTT
CGCTCGTCAGTAACCCGACCAGCCATTCGGCAACTAGCGTTGATACCATT
GATCTCGTATGCGTTTCCGTGGACCAGTTGAATCGGTGGTTGCTCGGGCT
GCAATCGCTATGCAATCCAGACAATCGTCAACTGTTGCATCGCCTTACTC
TCGACGATATTACTAGATTTCGTGTTATATATAAGATTCGTGCCCATGCT
CATGCGAGGGGGCTAACCGTTCGAAGGTATATTTTGAAGAGAGTTGCTGA
AGCTGGACAGAGGAGAAGTTCTGCGGATGCTAATCGTGCGCAGTTGGATG
AAGTTTGCCAACTTGAGGCTGAATTGGCGCGTTTGCAGAAGACGCTTATC
GATTATGCACGCCGTGAGACGATGCTTAACACGTCGCTTAGAGATTTTCA
AGTTTCTTGGGAGGTTAACGTAAGTGATGTTGAACTGGTACATCCCATTG
GACGCGGAGCTTTCTCGGAAATGTGGAAGGGTATGTGGCGTTCTACTCCC
GTCGCTGTCAAAAAGCTCACTACAAGAACCGTCACAGGAGACATTCTCAA
TAGTGATCAACCTGATGACTTTCGCGTTGGAGAACGCCGTATCCCTTCGG
CAGATACTCTAGGAAACACTGGTATATCCCCCGAAGATAGGGAGATGTTG
AAAGATTTCCGACTTGAAGTTTCAATGCTCAACAAAGTAAGGCATCCGAA
CGTTGTTCTCTTTCTTGGGGCATGCACTGTGCCACCACAGCTCTGCATAT
TAACCGAGTTTTGTCACGGTGGCAGTTTGTTTGCAGCGTTGAGGAAACGA
TCATGGAGACAATGCCTGTCGCTGCAGGATTTGCGAAATGTTGCGAGGTA
CATCGCACGTGGTATGAGGTACCTACACGCATGTCATATCATTCATCGTG
ATCTTAAGTCGCAGAATCTCCTTCTCGATAGACCTGTCGAAGACGGGTGC
CCTGTTGTCAAAGTCGCTGATTTTGGACTAAGTAGACAGTTTCGAGGAAT
TGGAACTGTTACGGGCTCGGTGGCTGGAGTCATGACTAGTGAAACTGGAA
CATATCGCTGGATGGCACCTGAGATGATCCGCCACGAACCTTATAATGAC
AAAGTTGATGTATACTCTTTTGGGATTGTGCTGTGGGAGTTGTTCTCGTG
TGAAATTCCGTTCGCGAGCATGACGCCCGTACAAGCGGCTTTTGCGGTTG
CTGACAAACACCTTAGACCTAAAGCAGAGTCAGAATACGCAAGAAGAGTA
CAGATACCAACTGCATGGGATGCACTGATCGAACGTTGTTGGCACCGTGA
CTCTCATGAACGGCCACGTTTCAATGAGGTTTTAAGAGTGTTAGATGAAA
TGGAGAGCTGTGCGGAAGAGGAGGTTCCTCGATCGCTAATGAGATATTCA
GCTGCAGAGAGAAAAGAGCTCGGAAACTGGAGGAAGGGCGCCCAAGGAGG
TATTGATGTGAAACGATTTCAAGTTCAAGTTACACGGGAAGATGCAGAAG
GGCGTTCCAGAAGCGATGACGCAACACATGAAAAAACCGGCTTGCAGCAT
TCGGGAAGTGCACCAAATCTGGCACATATGTAA
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Coding sequence (CDS) from alignment at NODE_143_length_44032_cov_4.581120:21183..23615-

>Gcaud3086.t1 ID=Gcaud3086.t1|Name=Gcaud3086.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2277bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:21183..23615- (Gracilaria caudata M_176_S67 male)
ATGTGCAAGATGAATCTTCACGAGTTCTCTACGCCGTTGCCGAATGGGAT
TACTGTGCATCATCTCGAGTTACATAACCTCTCGGTGAGGGAGCAGCGTC
CTATCATTGAGTTTGAGTGCACTGGTGATGACGATGAGCATGAGTTCGTG
CTCACCGTGTTCGGCCGCGAACGCGCCGGTTTGTTGGCCGATCTTACCGA
CTATCTCGAGTCTATTGCGCTCGGAGTCAAACAGGCTAACATCTATTCCT
TTCCGAATGGCGCCGTTATGGACCAGTTCACTCTGGCTGATCCGAATAGA
TTGCTGCTGGATGATGAGATGCTCGTCAGCATTCATGACACACTTGTCAA
GCTCATCGGCAATGATGGTGCCTCGTTGTCGCGCCGTGCCCGGTTAAGAA
TGCACTTCGACAATCATTCACCTCAGGCAAAGGATTCTCTTTATAACTAT
GCTTTGTTGCGACATCGCGTTCCGATCACCCTGCTTGCGCCCCGATTCGC
GCCACGTGCAACCATCGTAAGAAGGACCTGGTCCAACATCGCTCTTACTG
AGATGGTTGAGGAACAGAAACAAGAGCTCGAGAGACAGCACAGAGACAGC
GAGGCAGTGACAGCCGATTTGGTGCAGCATGCATTATCAACCCTGGAGGA
AGGCGAATATCTTTATCATTACTCGTCTGATACGCGATACCGACACAAAT
TCAACATCTCCGAGGATCATCGGTATTTATGCTGGGGTGATTCCTGCGCT
GCTCGTCTTAGTCGATACGCAGGCGTTTTGTTCGGACCCAAGTCTGCCGT
CTTTCAAGACCTGGGTCCCAGACTTGTTGATCCAGAGTGGCTCTGCTTTT
CGCTCGTCAGTAACCCGACCAGCCATTCGGCAACTAGCGTTGATACCATT
GATCTCGTATGCGTTTCCGTGGACCAGTTGAATCGGTGGTTGCTCGGGCT
GCAATCGCTATGCAATCCAGACAATCGTCAACTGTTGCATCGCCTTACTC
TCGACGATATTACTAGATTTCGTGTTATATATAAGATTCGTGCCCATGCT
CATGCGAGGGGGCTAACCGTTCGAAGGTATATTTTGAAGAGAGTTGCTGA
AGCTGGACAGAGGAGAAGTTCTGCGGATGCTAATCGTGCGCAGTTGGATG
AAGTTTGCCAACTTGAGGCTGAATTGGCGCGTTTGCAGAAGACGCTTATC
GATTATGCACGCCGTGAGACGATGCTTAACACGTCGCTTAGAGATTTTCA
AGTTTCTTGGGAGGTTAACGTAAGTGATGTTGAACTGGTACATCCCATTG
GACGCGGAGCTTTCTCGGAAATGTGGAAGGGTATGTGGCGTTCTACTCCC
GTCGCTGTCAAAAAGCTCACTACAAGAACCGTCACAGGAGACATTCTCAA
TAGTGATCAACCTGATGACTTTCGCGTTGGAGAACGCCGTATCCCTTCGG
CAGATACTCTAGGAAACACTGGTATATCCCCCGAAGATAGGGAGATGTTG
AAAGATTTCCGACTTGAAGTTTCAATGCTCAACAAATTTGTTTGCAGCGT
TGAGGAAACGATCATGGAGACAATGCCTGTCGCTGCAGGATTTGCGAAAT
GTTGCGAGAATCTCCTTCTCGATAGACCTGTCGAAGACGGGTGCCCTGTT
GTCAAAGTCGCTGATTTTGGACTAAGTAGACAGTTTCGAGGAATTGGAAC
TGTTACGGGCTCGGTGGCTGGAGTCATGACTAGTGAAACTGGAACATATC
GCTGGATGGCACCTGAGATGATCCGCCACGAACCTTATAATGACAAAGTT
GATGTATACTCTTTTGGGATTGTGCTGTGGGAGTTGTTCTCGTGTGAAAT
TCCGTTCGCGAGCATGACGCCCGTACAAGCGGCTTTTGCGGTTGCTGACA
AACACCTTAGACCTAAAGCAGAGTCAGAATACGCAAGAAGAGTACAGATA
CCAACTGCATGGGATGCACTGATCGAACGTTGTTGGCACCGTGACTCTCA
TGAACGGCCACGTTTCAATGAGGTTTTAAGAGTGTTAGATGAAATGGAGA
GCTGTGCGGAAGAGGAGGTTCCTCGATCGCTAATGAGATATTCAGCTGCA
GAGAGAAAAGAGCTCGGAAACTGGAGGAAGGGCGCCCAAGGAGGTATTGA
TGTGAAACGATTTCAAGTTCAAGTTACACGGGAAGATGCAGAAGGGCGTT
CCAGAAGCGATGACGCAACACATGAAAAAACCGGCTTGCAGCATTCGGGA
AGTGCACCAAATCTGGCACATATGTAA
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