Gcaud3084.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3084.t1
Unique Name	Gcaud3084.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	407

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_143_length_44032_cov_4.581120	contig	NODE_143_length_44032_cov_4.581120:15474..16694 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705937.1
PFAMs	2-oxoacid_dh,Biotin_lipoyl
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC02727,RC02833
KEGG ko	ko:K00658
KEGG Reaction	R02570,R02571,R08549
KEGG Pathway	ko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200
KEGG Module	M00009,M00011,M00032
GOs	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0006950,GO:0006979,GO:0008150,GO:0008270,GO:0016020,GO:0022626,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:1990904
Evalue	2.5e-137
EggNOG OGs	COG0508@1\|root,KOG0559@2759\|Eukaryota
EC	2.3.1.61
Description	dihydrolipoyllysine-residue succinyltransferase activity
COG category	C
BRITE	br01601,ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3084	Gcaud3084	Gracilaria caudata M_176_S67 male	gene	NODE_143_length_44032_cov_4.581120 15474..16694 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3084.t1.stop1	Gcaud3084.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_143_length_44032_cov_4.581120 15474..15476 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3084.t1.CDS1	Gcaud3084.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_143_length_44032_cov_4.581120 15474..16694 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3084.t1.exon1	Gcaud3084.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_143_length_44032_cov_4.581120 15474..16694 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3084.t1.start1	Gcaud3084.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_143_length_44032_cov_4.581120 16692..16694 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3084.t1	Gcaud3084.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_143_length_44032_cov_4.581120 15474..16694 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_143_length_44032_cov_4.581120:15474..16694-
coding sequence from alignment at NODE_143_length_44032_cov_4.581120:15474..16694-

mRNA sequence

>Gcaud3084.t1 ID=Gcaud3084.t1|Name=Gcaud3084.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=407bp
MFRAFRVARFASRLLDRYPRRPVPPHLSQWRALASQPLPVPHMGESITEG
TVAEWLVDAGQGVSEDQVLVQLETDKIVVDVRAEKPGVLIERTAEEGEVV
AVGAQLGLIDYEKAAAPSAVATEPDVAPVPEVEPPQPEQPAPPAPEPVSV
PPPQPSKPDGPIEVLPPGSMTDSGERRVKMTRMRKRIAERLKEAQNTAAM
LTTFNEMDMSALIDLRKEFKEAFEKRHGAKLGFMSAFVKACTVALQEQPE
VNAFIDGDDIVYRDYVDISVAVSTPKGLVVPAVRGCENMNFATIEKTIVS
LGERARSGELTLEEMQGGTFTISNGGVFGSLLSTPILNMPQSAILGMHII
QKRPVVVKDQIVIRPMMYVALSYDHRLIDGREAVTFLRRVKTLIEDPRRL
LLEIDI*

spliced messenger RNA

>Gcaud3084.t1 ID=Gcaud3084.t1|Name=Gcaud3084.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:15474..16694- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGCGCCTTTCGAGTAGCGCGTTTTGCCTCTAGGCTGTTGGATCG
CTATCCTCGTCGCCCTGTCCCTCCCCATTTGTCGCAATGGCGCGCTCTGG
CCTCGCAGCCTCTCCCCGTGCCGCATATGGGAGAGTCCATCACCGAGGGT
ACCGTCGCCGAGTGGCTTGTCGATGCTGGACAAGGCGTGTCTGAAGATCA
GGTTCTTGTGCAGCTCGAGACAGATAAGATCGTCGTCGATGTGCGCGCTG
AAAAGCCCGGCGTCCTTATCGAGCGCACCGCAGAGGAGGGTGAGGTTGTT
GCCGTCGGCGCCCAATTAGGGCTCATTGATTATGAGAAAGCTGCCGCGCC
GTCAGCCGTTGCTACAGAGCCAGATGTTGCTCCTGTTCCGGAAGTGGAGC
CCCCGCAGCCTGAGCAGCCCGCTCCGCCGGCGCCGGAGCCAGTGTCAGTA
CCCCCACCACAACCGAGCAAGCCCGATGGTCCTATCGAGGTGCTTCCGCC
TGGAAGCATGACTGATAGCGGGGAGCGTCGCGTCAAGATGACCCGCATGC
GTAAACGAATTGCAGAGCGTCTGAAGGAAGCGCAGAACACTGCCGCAATG
CTTACTACCTTCAATGAAATGGACATGTCCGCACTTATCGATCTCAGAAA
AGAGTTCAAAGAAGCTTTTGAGAAGAGACATGGAGCGAAGCTCGGTTTCA
TGTCCGCCTTTGTTAAGGCGTGTACCGTTGCGTTGCAGGAGCAACCGGAA
GTAAACGCCTTCATTGATGGTGATGACATTGTGTATCGCGATTATGTAGA
CATTTCTGTCGCCGTGTCTACACCGAAGGGACTCGTCGTGCCAGCGGTGC
GGGGGTGCGAAAACATGAATTTCGCTACCATCGAGAAAACCATTGTCTCG
CTTGGCGAACGTGCTCGAAGTGGCGAGCTAACATTGGAGGAAATGCAGGG
CGGTACATTCACCATTAGTAACGGCGGAGTATTTGGCAGTTTGCTTAGCA
CACCCATCTTGAACATGCCGCAAAGTGCTATTCTTGGAATGCACATCATC
CAGAAGAGGCCGGTCGTCGTCAAAGATCAAATTGTCATTCGACCTATGAT
GTACGTCGCTCTCAGCTACGACCATCGGCTTATTGACGGTAGGGAAGCCG
TTACATTCCTCAGGAGAGTGAAGACCCTCATTGAGGACCCACGACGTTTG
CTTTTGGAGATCGATATATAA

protein sequence of Gcaud3084.t1

>Gcaud3084.t1 ID=Gcaud3084.t1|Name=Gcaud3084.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=407bp
MFRAFRVARFASRLLDRYPRRPVPPHLSQWRALASQPLPVPHMGESITEG
TVAEWLVDAGQGVSEDQVLVQLETDKIVVDVRAEKPGVLIERTAEEGEVV
AVGAQLGLIDYEKAAAPSAVATEPDVAPVPEVEPPQPEQPAPPAPEPVSV
PPPQPSKPDGPIEVLPPGSMTDSGERRVKMTRMRKRIAERLKEAQNTAAM
LTTFNEMDMSALIDLRKEFKEAFEKRHGAKLGFMSAFVKACTVALQEQPE
VNAFIDGDDIVYRDYVDISVAVSTPKGLVVPAVRGCENMNFATIEKTIVS
LGERARSGELTLEEMQGGTFTISNGGVFGSLLSTPILNMPQSAILGMHII
QKRPVVVKDQIVIRPMMYVALSYDHRLIDGREAVTFLRRVKTLIEDPRRL
LLEIDI*

mRNA from alignment at NODE_143_length_44032_cov_4.581120:15474..16694-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3084.t1 ID=Gcaud3084.t1|Name=Gcaud3084.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:15474..16694- (Gracilaria caudata M_176_S67 male)
ATGTTCCGCGCCTTTCGAGTAGCGCGTTTTGCCTCTAGGCTGTTGGATCG
CTATCCTCGTCGCCCTGTCCCTCCCCATTTGTCGCAATGGCGCGCTCTGG
CCTCGCAGCCTCTCCCCGTGCCGCATATGGGAGAGTCCATCACCGAGGGT
ACCGTCGCCGAGTGGCTTGTCGATGCTGGACAAGGCGTGTCTGAAGATCA
GGTTCTTGTGCAGCTCGAGACAGATAAGATCGTCGTCGATGTGCGCGCTG
AAAAGCCCGGCGTCCTTATCGAGCGCACCGCAGAGGAGGGTGAGGTTGTT
GCCGTCGGCGCCCAATTAGGGCTCATTGATTATGAGAAAGCTGCCGCGCC
GTCAGCCGTTGCTACAGAGCCAGATGTTGCTCCTGTTCCGGAAGTGGAGC
CCCCGCAGCCTGAGCAGCCCGCTCCGCCGGCGCCGGAGCCAGTGTCAGTA
CCCCCACCACAACCGAGCAAGCCCGATGGTCCTATCGAGGTGCTTCCGCC
TGGAAGCATGACTGATAGCGGGGAGCGTCGCGTCAAGATGACCCGCATGC
GTAAACGAATTGCAGAGCGTCTGAAGGAAGCGCAGAACACTGCCGCAATG
CTTACTACCTTCAATGAAATGGACATGTCCGCACTTATCGATCTCAGAAA
AGAGTTCAAAGAAGCTTTTGAGAAGAGACATGGAGCGAAGCTCGGTTTCA
TGTCCGCCTTTGTTAAGGCGTGTACCGTTGCGTTGCAGGAGCAACCGGAA
GTAAACGCCTTCATTGATGGTGATGACATTGTGTATCGCGATTATGTAGA
CATTTCTGTCGCCGTGTCTACACCGAAGGGACTCGTCGTGCCAGCGGTGC
GGGGGTGCGAAAACATGAATTTCGCTACCATCGAGAAAACCATTGTCTCG
CTTGGCGAACGTGCTCGAAGTGGCGAGCTAACATTGGAGGAAATGCAGGG
CGGTACATTCACCATTAGTAACGGCGGAGTATTTGGCAGTTTGCTTAGCA
CACCCATCTTGAACATGCCGCAAAGTGCTATTCTTGGAATGCACATCATC
CAGAAGAGGCCGGTCGTCGTCAAAGATCAAATTGTCATTCGACCTATGAT
GTACGTCGCTCTCAGCTACGACCATCGGCTTATTGACGGTAGGGAAGCCG
TTACATTCCTCAGGAGAGTGAAGACCCTCATTGAGGACCCACGACGTTTG
CTTTTGGAGATCGATATATAA

Coding sequence (CDS) from alignment at NODE_143_length_44032_cov_4.581120:15474..16694-

>Gcaud3084.t1 ID=Gcaud3084.t1|Name=Gcaud3084.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1221bp|location=Sequence derived from alignment at NODE_143_length_44032_cov_4.581120:15474..16694- (Gracilaria caudata M_176_S67 male)
ATGTTCCGCGCCTTTCGAGTAGCGCGTTTTGCCTCTAGGCTGTTGGATCG
CTATCCTCGTCGCCCTGTCCCTCCCCATTTGTCGCAATGGCGCGCTCTGG
CCTCGCAGCCTCTCCCCGTGCCGCATATGGGAGAGTCCATCACCGAGGGT
ACCGTCGCCGAGTGGCTTGTCGATGCTGGACAAGGCGTGTCTGAAGATCA
GGTTCTTGTGCAGCTCGAGACAGATAAGATCGTCGTCGATGTGCGCGCTG
AAAAGCCCGGCGTCCTTATCGAGCGCACCGCAGAGGAGGGTGAGGTTGTT
GCCGTCGGCGCCCAATTAGGGCTCATTGATTATGAGAAAGCTGCCGCGCC
GTCAGCCGTTGCTACAGAGCCAGATGTTGCTCCTGTTCCGGAAGTGGAGC
CCCCGCAGCCTGAGCAGCCCGCTCCGCCGGCGCCGGAGCCAGTGTCAGTA
CCCCCACCACAACCGAGCAAGCCCGATGGTCCTATCGAGGTGCTTCCGCC
TGGAAGCATGACTGATAGCGGGGAGCGTCGCGTCAAGATGACCCGCATGC
GTAAACGAATTGCAGAGCGTCTGAAGGAAGCGCAGAACACTGCCGCAATG
CTTACTACCTTCAATGAAATGGACATGTCCGCACTTATCGATCTCAGAAA
AGAGTTCAAAGAAGCTTTTGAGAAGAGACATGGAGCGAAGCTCGGTTTCA
TGTCCGCCTTTGTTAAGGCGTGTACCGTTGCGTTGCAGGAGCAACCGGAA
GTAAACGCCTTCATTGATGGTGATGACATTGTGTATCGCGATTATGTAGA
CATTTCTGTCGCCGTGTCTACACCGAAGGGACTCGTCGTGCCAGCGGTGC
GGGGGTGCGAAAACATGAATTTCGCTACCATCGAGAAAACCATTGTCTCG
CTTGGCGAACGTGCTCGAAGTGGCGAGCTAACATTGGAGGAAATGCAGGG
CGGTACATTCACCATTAGTAACGGCGGAGTATTTGGCAGTTTGCTTAGCA
CACCCATCTTGAACATGCCGCAAAGTGCTATTCTTGGAATGCACATCATC
CAGAAGAGGCCGGTCGTCGTCAAAGATCAAATTGTCATTCGACCTATGAT
GTACGTCGCTCTCAGCTACGACCATCGGCTTATTGACGGTAGGGAAGCCG
TTACATTCCTCAGGAGAGTGAAGACCCTCATTGAGGACCCACGACGTTTG
CTTTTGGAGATCGATATATAA