Gcaud3074.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3074.t1
Unique NameGcaud3074.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1510_length_10070_cov_5.324281contigNODE_1510_length_10070_cov_5.324281:2766..6003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog983920.Y88_0365
PFAMsAAA_assoc_C,ABC_tran
Max annot lvl204457|Sphingomonadales
KEGG koko:K02049
KEGG TC3.A.1.16,3.A.1.17
KEGG ModuleM00188
Evalue2.55e-13
EggNOG OGsCOG1116@1|root,COG4754@1|root,COG1116@2|Bacteria,COG4754@2|Bacteria,1MUDV@1224|Proteobacteria,2TRXZ@28211|Alphaproteobacteria,2K2US@204457|Sphingomonadales
DescriptionABC transporter related
COG categoryP
BRITEko00000,ko00002,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3074Gcaud3074Gracilaria caudata M_176_S67 malegeneNODE_1510_length_10070_cov_5.324281 2766..6003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3074.t1Gcaud3074.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1510_length_10070_cov_5.324281 2766..6003 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3074.t1.stop1Gcaud3074.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1510_length_10070_cov_5.324281 2766..2768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3074.t1.CDS1Gcaud3074.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1510_length_10070_cov_5.324281 2766..2825 -
Gcaud3074.t1.CDS2Gcaud3074.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1510_length_10070_cov_5.324281 2914..2998 -
Gcaud3074.t1.CDS3Gcaud3074.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1510_length_10070_cov_5.324281 4331..4596 -
Gcaud3074.t1.CDS4Gcaud3074.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_1510_length_10070_cov_5.324281 5533..5702 -
Gcaud3074.t1.CDS5Gcaud3074.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_1510_length_10070_cov_5.324281 5955..6003 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3074.t1.exon1Gcaud3074.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1510_length_10070_cov_5.324281 2766..2825 -
Gcaud3074.t1.exon2Gcaud3074.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1510_length_10070_cov_5.324281 2914..2998 -
Gcaud3074.t1.exon3Gcaud3074.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1510_length_10070_cov_5.324281 4331..4596 -
Gcaud3074.t1.exon4Gcaud3074.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_1510_length_10070_cov_5.324281 5533..5702 -
Gcaud3074.t1.exon5Gcaud3074.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_1510_length_10070_cov_5.324281 5955..6003 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3074.t1.intron1Gcaud3074.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1510_length_10070_cov_5.324281 2826..2913 -
Gcaud3074.t1.intron2Gcaud3074.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1510_length_10070_cov_5.324281 2999..4330 -
Gcaud3074.t1.intron3Gcaud3074.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_1510_length_10070_cov_5.324281 4597..5532 -
Gcaud3074.t1.intron4Gcaud3074.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_1510_length_10070_cov_5.324281 5703..5954 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3074.t1.start1Gcaud3074.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1510_length_10070_cov_5.324281 6001..6003 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3074.t1 ID=Gcaud3074.t1|Name=Gcaud3074.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=210bp
LQEYDPASVPLRDNTNGVVCCIHQYKELRRIAVQSICGYHRLDILCHSAG
QGSFFMPVLIKAGDWAHNLLNDRTFALYLWLTVLENIELGLSSASRVSRD
VIRERSMRAIDIIGFDGYENAYPHELSGNTGLVRNRPFFYEGKTAVGGAR
YNPTYDSGLEVFCRRVANEVVPPRLCITQLPSSSSANRFKLSMVARYKTP
SPVNYQSRR*
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spliced messenger RNA

>Gcaud3074.t1 ID=Gcaud3074.t1|Name=Gcaud3074.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp|location=Sequence derived from alignment at NODE_1510_length_10070_cov_5.324281:2766..6003- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCAAGAATACGATCCGGCGTCAGTCCCTCTGCGGGACAACACTAATGG
AGTTGTTTGTTGTATTCATCAATACAAAGAGTTAAGACGTATTGCAGTAC
AATCTATCTGTGGGTATCACAGGCTGGATATCCTGTGCCATTCAGCAGGT
CAGGGCTCATTCTTCATGCCCGTGCTCATCAAGGCTGGGGACTGGGCCCA
TAACCTGTTGAATGACAGAACGTTCGCACTCTATCTTTGGCTCACCGTGC
TGGAGAACATCGAACTTGGTCTCTCCAGTGCGTCACGTGTTAGTCGCGAT
GTCATTCGAGAGCGCTCCATGAGAGCAATTGACATTATTGGTTTCGACGG
GTATGAAAATGCGTACCCGCATGAGCTTTCGGGAAACACTGGGCTAGTCA
GAAATCGTCCATTTTTCTACGAAGGCAAAACAGCAGTAGGTGGTGCTCGT
TATAATCCAACTTATGATAGTGGACTAGAGGTGTTTTGCAGACGCGTTGC
AAACGAAGTTGTGCCTCCACGACTATGCATCACGCAACTACCTTCATCTT
CGTCCGCAAATCGGTTCAAGCTGTCCATGGTTGCAAGGTACAAAACCCCG
AGTCCGGTGAACTATCAGAGTCGTCGCTAA
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protein sequence of Gcaud3074.t1

>Gcaud3074.t1 ID=Gcaud3074.t1|Name=Gcaud3074.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=210bp
LQEYDPASVPLRDNTNGVVCCIHQYKELRRIAVQSICGYHRLDILCHSAG
QGSFFMPVLIKAGDWAHNLLNDRTFALYLWLTVLENIELGLSSASRVSRD
VIRERSMRAIDIIGFDGYENAYPHELSGNTGLVRNRPFFYEGKTAVGGAR
YNPTYDSGLEVFCRRVANEVVPPRLCITQLPSSSSANRFKLSMVARYKTP
SPVNYQSRR*
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mRNA from alignment at NODE_1510_length_10070_cov_5.324281:2766..6003-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3074.t1 ID=Gcaud3074.t1|Name=Gcaud3074.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3238bp|location=Sequence derived from alignment at NODE_1510_length_10070_cov_5.324281:2766..6003- (Gracilaria caudata M_176_S67 male)
CTGCAAGAATACGATCCGGCGTCAGTCCCTCTGCGGGACAACACTAATGG
TACGCGAGTTTTGAGTCTTTTTGCCGCCTGCACAAGTCACTTCTGGATAT
CGCATTGCTAGATATCCCACACCATTCGACGGTTAAGGCCCAAACTCTGA
GCCTGTACCAGCTCTGAGCCTGGGCCCATAACTGTTGAATGGGGTAGGAA
TCCTGCAACTGTCGACCTTACAAAGTGTACAACTTCTTACGGGGTCACGC
TAGATTTCTTATTTCAATGGCACTAATTGCAGTCTCGCACTTGGAGCTTA
GGAGTTGTTTGTTGTATTCATCAATACAAAGAGTTAAGACGTATTGCAGT
ACAATCTATCTGTGGGTATCACAGGCTGGATATCCTGTGCCATTCAGCAG
GTCAGGGCTCATTCTTCATGCCCGTGCTCATCAAGGCTGGGGACTGGGCC
CATAACCTGTTGAATGACAGAGTGAGTCTAGGACTGTTGATCATTCTCAG
GGTGTTAGAAAAGCAGCATCGCATAGACATATTTAGAGATGTGGCCTATA
AAAATTTTACGGAATCATCGAAGAAGCGGCTAGAGAATGATACAAGTTCT
CTAACTGGTGCGACACTCTGACCGCTTCCTCCGTAACTTTTGTGCTTAGA
AGTTCGCTACCTAGTCTTCGCAAATAAGTAAACTATGGAACTTCACATAC
ATTTGTAACCTCAATGGTCGTTAATGCAACTATAGGTTATCAGAAACGTC
CCGGCGTCTATTTGGCTCTATTTCACTCTAATCCTGAAGACGGCTCATCT
CGGGAGTTGCTTCGAAAAGTGAGTTGACTTCATTGATATTCATTTCGTAT
GTAATCGCGGCTTCGAGGGCATCTTGCCTGCTTCCGTTTCTGTGGAAGCT
GTTTCTGTTCGCGAGCTTTATGTTCCTTCTTTTCCTTAGTAAGTATAATC
GCCTTTCGAAGACGTTCCGTTTCGCCCTGTGTCGTAGGACTCTTGACACA
GGTTGTCCCTCAGATCGATGTCTGACTTTGTCCGCTTTTGCACAACGCTC
CTGGCATGTCGCGCCGACATCCTGGTCAGTGTTGCAAGCAATGCACGTTC
TATATAACCGCGAAAAGTTCGCGTGTGAATACCACTGCACCTTCTGTCGT
ACCTTCTGCCTCTCCCCCCGCTCCATTATCTCGTCGCTTAAGCATGTTTC
GTATGATGTGGCCGATGTTCGTGTTATCGAGGATGTCAACCTGTGTATTG
CAGAGGGTGAAGTTGTTTGTATTGTCGGTGCGCCTGGTTTGGGACAGTCT
ACCATTCTGAGAATACTGGCAAGACTGAGGCGACCTTCCGCGGGAGTTGT
ACTGTATAAAGGTTGCCCTTCTTGAGGTCCTAATCTGGCGCTTCTATTGT
GTTTCAGACGTTCGCACTCTATCTTTGGCTCACCGTGCTGGAGAACATCG
AACTTGGTCTCTCCAGTGCGTCACGTGTTAGTCGCGATGTCATTCGAGAG
CGCTCCATGAGAGCAATTGACATTATTGGTTTCGACGGGTATGAAAATGC
GTACCCGCATGAGCTTTCGGGAAACACTGGGCTAGTCAGAAATCGTCCAT
TTTTCTACGAAGGCAAAACAGCAGTAGGTGGTGCTCGTTATAATCCAACT
TATGATAGTGGACTAGAGGTGTTGTACATGGTACGACTTTGGACACTTCT
GAATTTAGGAGGAATAAGCACACTGAGATCAACAAGTACGGTTACGGCGG
GAATCAAAACATGTAGTTACTTCTCTCTCCCTTTTAAGGAGAGAAAAGTA
CCTTTAGGTGCTGCTCAGTTGTGTTAGAGATTAGAGCACAGCTTCCATAA
TAAAGAAGAAGTAACCGTCTGATTCTGCAAGACACACAGAGCCCTTCACG
TACTACTTCTTCAATATGGTCTGTAGTATCGGCATAAGAGCGAAGCCTCA
CCCGATGTGGCTAACCCTTAGTAGTTGCCACTACTTCTGGCGTTCGATTA
AATACCGCTATGGGGCACCACACAGGATAGCGGATATTGATTTTCTTCGC
GGAGTACTGTGTAGCAATACGGCTGGCTGAGAGTTGTACAAGAGTATAGA
AGTATCGTACGAGACCCATACTTTGGCATTTGTCAAGTTTTCGGGCTCCG
TCCGCAAGCCTCACTGGTGCTTGTTCAATAGCGAGGTAAGCACAGGGCTG
GGAGCGATGGAGGTGGTTTGGAGATTGCTCGAGTGGAAGCGACAAGGGAC
GAGTCGTCGAAGATTTGTTTTGCACAACCACTTTGGGCGCAGAAGCCAGC
GACGAAGGCGCTTGTGGGCGGAAGGAATAATAGCGTAGGACGGCAATTCC
GTTCTCCACAAGCCGTGAAGAGCTGTAGGGAATATCGCGCCCGAAGGGGC
GCGATATGCGATATGTTTGCACGGGAGCTGCACCATCTCGAATTGGTGAC
TTTGTTTCGGTTTTGCACGGCTTAATGGGCTCATTCTGCCAGATTCTCAG
TGGTACCAAGGTACCTCAGAAGAAAATGGAGCAAGGCTATGTGCAGTTTG
CTTGCTTTCGAGTGCACCGAAAAATGATGAAGGGTGGGGCTTCCGGTTCA
TGGTCAGCGCACCTGTAGTGCTGATCCGCGGATTCAGATCTCCGCTTTGT
GGTCGTTTTCGTCCGGGATCATGATCATCAAGGTTCTGCGCAGTGGGGTC
TTGTTGATACGAAGCTTGATACCGAGAAGATCAAATATACTGCGATTGCG
AAGCGACTCTGATTAAAGAGCCGTGCTCATCTCTCAACTGTTTTGTATAG
CGGGCCAAGGATCTTTGCCTGAAATCTTGCACAAGGCACCATGCTGCACA
GGCGAGCTACTTTGTACTACAGTGTGTCGCGGACGAGCCAGAAAGCGCGC
TCTCTCTCTCTCTCGATACCGCAGCGTGTAAAAAGGGAGCACGCTTCTTG
CACGACAATACTGCGCCTGCGGTGGCGCCAACACTCATTGTTGCGATGCA
TGTAGTTGCAGACGCGTTGCAAACGAAGTTGTGCCTCCACGACTATGCAT
CACGCAACTACCTTCATCTTCGTCCGCAAATCGGTTCAAGGTTCGTTTGT
GGTAATACCCTTGATTACCACTACTCTTTCTCACCATTTCCTAATTATCT
TCTCACAAAATCTCTTTTCACGCGAAAGCTGTCCATGGTTGCAAGGTACA
AAACCCCGAGTCCGGTGAACTATCAGAGTCGTCGCTAA
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Coding sequence (CDS) from alignment at NODE_1510_length_10070_cov_5.324281:2766..6003-

>Gcaud3074.t1 ID=Gcaud3074.t1|Name=Gcaud3074.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=630bp|location=Sequence derived from alignment at NODE_1510_length_10070_cov_5.324281:2766..6003- (Gracilaria caudata M_176_S67 male)
CTGCAAGAATACGATCCGGCGTCAGTCCCTCTGCGGGACAACACTAATGG
AGTTGTTTGTTGTATTCATCAATACAAAGAGTTAAGACGTATTGCAGTAC
AATCTATCTGTGGGTATCACAGGCTGGATATCCTGTGCCATTCAGCAGGT
CAGGGCTCATTCTTCATGCCCGTGCTCATCAAGGCTGGGGACTGGGCCCA
TAACCTGTTGAATGACAGAACGTTCGCACTCTATCTTTGGCTCACCGTGC
TGGAGAACATCGAACTTGGTCTCTCCAGTGCGTCACGTGTTAGTCGCGAT
GTCATTCGAGAGCGCTCCATGAGAGCAATTGACATTATTGGTTTCGACGG
GTATGAAAATGCGTACCCGCATGAGCTTTCGGGAAACACTGGGCTAGTCA
GAAATCGTCCATTTTTCTACGAAGGCAAAACAGCAGTAGGTGGTGCTCGT
TATAATCCAACTTATGATAGTGGACTAGAGGTGTTTTGCAGACGCGTTGC
AAACGAAGTTGTGCCTCCACGACTATGCATCACGCAACTACCTTCATCTT
CGTCCGCAAATCGGTTCAAGCTGTCCATGGTTGCAAGGTACAAAACCCCG
AGTCCGGTGAACTATCAGAGTCGTCGCTAA
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