Gcaud3071.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3071.t1
Unique NameGcaud3071.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_842_length_17153_cov_4.410796contigNODE_842_length_17153_cov_4.410796:8307..8936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3071Gcaud3071Gracilaria caudata M_176_S67 malegeneNODE_842_length_17153_cov_4.410796 8307..8936 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3071.t1.start1Gcaud3071.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_842_length_17153_cov_4.410796 8307..8309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3071.t1.CDS1Gcaud3071.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_842_length_17153_cov_4.410796 8307..8936 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3071.t1.exon1Gcaud3071.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_842_length_17153_cov_4.410796 8307..8936 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3071.t1.stop1Gcaud3071.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_842_length_17153_cov_4.410796 8934..8936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3071.t1Gcaud3071.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_842_length_17153_cov_4.410796 8307..8936 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3071.t1 ID=Gcaud3071.t1|Name=Gcaud3071.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=210bp
MENVAPQALQPASRTRKPLGNLSRTEGKPALHDSNRNGVQGKRRALGDIT
NRAGEQSSIFSSHNVKNTLTASLKLDEKSTIRDKAILNTSRTFRIPTDEF
GEVLDPEIIPAPIPNVPYTPVLFEDGELESARRKLEEQAAQEDDDRFDFM
GRPYVRTELKFQEKVDMPYDPVEMMNEPDEQDLLSFTNLDLFNPDQIIPK
NEYSTLELA*
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spliced messenger RNA

>Gcaud3071.t1 ID=Gcaud3071.t1|Name=Gcaud3071.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp|location=Sequence derived from alignment at NODE_842_length_17153_cov_4.410796:8307..8936+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAACGTGGCACCGCAAGCTCTTCAGCCTGCCTCTAGAACAAGAAA
ACCTTTGGGTAACTTGTCGCGCACGGAAGGAAAGCCAGCACTTCACGACT
CCAATCGCAATGGCGTCCAAGGGAAGCGACGAGCGCTGGGCGATATAACG
AACCGAGCTGGTGAGCAGAGCAGCATATTTTCTTCGCACAACGTGAAGAA
CACATTGACCGCATCGCTCAAGCTGGATGAAAAGAGCACAATAAGAGACA
AGGCAATTCTCAATACCTCTCGCACTTTCCGCATTCCCACTGACGAATTT
GGGGAAGTGTTAGACCCGGAGATCATCCCAGCCCCTATTCCCAATGTTCC
GTACACCCCCGTGCTGTTTGAAGATGGCGAGCTGGAAAGTGCTCGTCGGA
AACTCGAGGAGCAAGCTGCGCAGGAAGATGATGATAGGTTTGATTTCATG
GGAAGGCCCTATGTCAGAACGGAGCTCAAGTTCCAGGAGAAGGTTGACAT
GCCGTACGATCCTGTTGAAATGATGAATGAACCAGACGAGCAGGATTTGT
TGAGCTTCACCAATCTGGACTTGTTCAATCCAGACCAAATTATTCCGAAG
AATGAGTACTCTACGCTTGAGCTTGCGTGA
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protein sequence of Gcaud3071.t1

>Gcaud3071.t1 ID=Gcaud3071.t1|Name=Gcaud3071.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=210bp
MENVAPQALQPASRTRKPLGNLSRTEGKPALHDSNRNGVQGKRRALGDIT
NRAGEQSSIFSSHNVKNTLTASLKLDEKSTIRDKAILNTSRTFRIPTDEF
GEVLDPEIIPAPIPNVPYTPVLFEDGELESARRKLEEQAAQEDDDRFDFM
GRPYVRTELKFQEKVDMPYDPVEMMNEPDEQDLLSFTNLDLFNPDQIIPK
NEYSTLELA*
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mRNA from alignment at NODE_842_length_17153_cov_4.410796:8307..8936+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3071.t1 ID=Gcaud3071.t1|Name=Gcaud3071.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp|location=Sequence derived from alignment at NODE_842_length_17153_cov_4.410796:8307..8936+ (Gracilaria caudata M_176_S67 male)
ATGGAGAACGTGGCACCGCAAGCTCTTCAGCCTGCCTCTAGAACAAGAAA
ACCTTTGGGTAACTTGTCGCGCACGGAAGGAAAGCCAGCACTTCACGACT
CCAATCGCAATGGCGTCCAAGGGAAGCGACGAGCGCTGGGCGATATAACG
AACCGAGCTGGTGAGCAGAGCAGCATATTTTCTTCGCACAACGTGAAGAA
CACATTGACCGCATCGCTCAAGCTGGATGAAAAGAGCACAATAAGAGACA
AGGCAATTCTCAATACCTCTCGCACTTTCCGCATTCCCACTGACGAATTT
GGGGAAGTGTTAGACCCGGAGATCATCCCAGCCCCTATTCCCAATGTTCC
GTACACCCCCGTGCTGTTTGAAGATGGCGAGCTGGAAAGTGCTCGTCGGA
AACTCGAGGAGCAAGCTGCGCAGGAAGATGATGATAGGTTTGATTTCATG
GGAAGGCCCTATGTCAGAACGGAGCTCAAGTTCCAGGAGAAGGTTGACAT
GCCGTACGATCCTGTTGAAATGATGAATGAACCAGACGAGCAGGATTTGT
TGAGCTTCACCAATCTGGACTTGTTCAATCCAGACCAAATTATTCCGAAG
AATGAGTACTCTACGCTTGAGCTTGCGTGA
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Coding sequence (CDS) from alignment at NODE_842_length_17153_cov_4.410796:8307..8936+

>Gcaud3071.t1 ID=Gcaud3071.t1|Name=Gcaud3071.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=630bp|location=Sequence derived from alignment at NODE_842_length_17153_cov_4.410796:8307..8936+ (Gracilaria caudata M_176_S67 male)
ATGGAGAACGTGGCACCGCAAGCTCTTCAGCCTGCCTCTAGAACAAGAAA
ACCTTTGGGTAACTTGTCGCGCACGGAAGGAAAGCCAGCACTTCACGACT
CCAATCGCAATGGCGTCCAAGGGAAGCGACGAGCGCTGGGCGATATAACG
AACCGAGCTGGTGAGCAGAGCAGCATATTTTCTTCGCACAACGTGAAGAA
CACATTGACCGCATCGCTCAAGCTGGATGAAAAGAGCACAATAAGAGACA
AGGCAATTCTCAATACCTCTCGCACTTTCCGCATTCCCACTGACGAATTT
GGGGAAGTGTTAGACCCGGAGATCATCCCAGCCCCTATTCCCAATGTTCC
GTACACCCCCGTGCTGTTTGAAGATGGCGAGCTGGAAAGTGCTCGTCGGA
AACTCGAGGAGCAAGCTGCGCAGGAAGATGATGATAGGTTTGATTTCATG
GGAAGGCCCTATGTCAGAACGGAGCTCAAGTTCCAGGAGAAGGTTGACAT
GCCGTACGATCCTGTTGAAATGATGAATGAACCAGACGAGCAGGATTTGT
TGAGCTTCACCAATCTGGACTTGTTCAATCCAGACCAAATTATTCCGAAG
AATGAGTACTCTACGCTTGAGCTTGCGTGA
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