Gcaud3068.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3068.t1
Unique Name	Gcaud3068.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	283

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_842_length_17153_cov_4.410796	contig	NODE_842_length_17153_cov_4.410796:2..850 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	126957.SMAR009292-PA
Preferred name	RTN1
PFAMs	Reticulon
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K20721,ko:K20722
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005790,GO:0006996,GO:0007029,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030154,GO:0030176,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0033267,GO:0042175,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044295,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045169,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0061024,GO:0071786,GO:0071840,GO:0090158,GO:0097458,GO:0098827,GO:0120025,GO:0120038,GO:0150034,GO:1990809
Evalue	1.95e-07
EggNOG OGs	KOG1792@1\|root,KOG1792@2759\|Eukaryota,39SV8@33154\|Opisthokonta,3BIWW@33208\|Metazoa,3CXIT@33213\|Bilateria,41YSI@6656\|Arthropoda
Description	Reticulon-like protein
COG category	U
BRITE	ko00000,ko03036,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3068	Gcaud3068	Gracilaria caudata M_176_S67 male	gene	NODE_842_length_17153_cov_4.410796 2..850 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3068.t1.CDS1	Gcaud3068.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_842_length_17153_cov_4.410796 2..850 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3068.t1.exon1	Gcaud3068.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_842_length_17153_cov_4.410796 2..850 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3068.t1.stop1	Gcaud3068.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_842_length_17153_cov_4.410796 848..850 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3068.t1	Gcaud3068.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_842_length_17153_cov_4.410796 2..850 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_842_length_17153_cov_4.410796:2..850+
coding sequence from alignment at NODE_842_length_17153_cov_4.410796:2..850+

mRNA sequence

>Gcaud3068.t1 ID=Gcaud3068.t1|Name=Gcaud3068.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=283bp
APTFPSFIDQAPTDAAAPKTSSAADPSSLVTMEPSTPVASLATPSASEAI
PAVPLPVAPSKSRIRAVLLWRDPKVTGVIFAADMLFFYLTLIRGNSVLSV
CGLLFGLYLAVRLAAVYANKHMGNKFDKYLARPPPSTPLFRRDSMMRIVD
TIVEEGNEIAEQLRDIIHCDKPIVAAKWIFVAFVIYQAGKYFSIVTICFI
ASLALFSVPLLYEKNKKQVDDALAKASDTASRHIESGRRAAADRAVKLRD
VAVQKSTPYLEKAPPVARNLAEKMGLTPKKMQ*

spliced messenger RNA

>Gcaud3068.t1 ID=Gcaud3068.t1|Name=Gcaud3068.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_842_length_17153_cov_4.410796:2..850+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GCTCCCACCTTCCCCTCCTTCATCGATCAAGCGCCCACCGACGCCGCCGC
TCCAAAGACCTCCTCCGCCGCCGATCCCTCCTCGCTCGTCACCATGGAAC
CATCCACCCCCGTAGCCTCGCTCGCCACCCCCTCCGCCTCTGAGGCCATC
CCGGCCGTCCCGCTTCCAGTCGCTCCCAGCAAGAGCCGCATTCGTGCCGT
TCTACTATGGCGCGATCCAAAGGTTACCGGCGTCATCTTCGCCGCCGACA
TGCTCTTCTTCTATCTCACGCTCATCAGGGGCAACTCTGTGCTTTCCGTT
TGCGGACTTTTGTTCGGCTTGTACCTCGCCGTGCGTCTTGCCGCGGTCTA
TGCCAACAAACATATGGGTAACAAGTTTGATAAGTACCTTGCCCGTCCGC
CGCCATCCACACCCTTGTTTAGACGTGACTCCATGATGCGCATCGTCGAT
ACTATCGTCGAAGAAGGAAATGAGATAGCCGAACAGTTACGCGACATAAT
TCACTGCGATAAGCCAATCGTTGCCGCCAAGTGGATTTTCGTTGCCTTCG
TCATCTACCAAGCCGGCAAGTATTTCTCTATCGTCACCATCTGTTTTATC
GCTTCCCTTGCGTTGTTCTCTGTGCCCCTTCTGTATGAGAAGAATAAGAA
GCAAGTTGATGACGCTTTGGCGAAGGCCTCCGACACCGCCTCGCGGCACA
TTGAGTCCGGACGCCGTGCTGCCGCCGATCGCGCTGTCAAGCTTCGTGAT
GTTGCTGTGCAAAAGTCCACACCTTATCTCGAGAAAGCTCCACCAGTCGC
CAGGAATCTTGCTGAGAAGATGGGTCTCACGCCGAAGAAGATGCAGTAG

protein sequence of Gcaud3068.t1

>Gcaud3068.t1 ID=Gcaud3068.t1|Name=Gcaud3068.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=283bp
APTFPSFIDQAPTDAAAPKTSSAADPSSLVTMEPSTPVASLATPSASEAI
PAVPLPVAPSKSRIRAVLLWRDPKVTGVIFAADMLFFYLTLIRGNSVLSV
CGLLFGLYLAVRLAAVYANKHMGNKFDKYLARPPPSTPLFRRDSMMRIVD
TIVEEGNEIAEQLRDIIHCDKPIVAAKWIFVAFVIYQAGKYFSIVTICFI
ASLALFSVPLLYEKNKKQVDDALAKASDTASRHIESGRRAAADRAVKLRD
VAVQKSTPYLEKAPPVARNLAEKMGLTPKKMQ*

mRNA from alignment at NODE_842_length_17153_cov_4.410796:2..850+

Legend: CDSpolypeptideexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3068.t1 ID=Gcaud3068.t1|Name=Gcaud3068.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_842_length_17153_cov_4.410796:2..850+ (Gracilaria caudata M_176_S67 male)
GCTCCCACCTTCCCCTCCTTCATCGATCAAGCGCCCACCGACGCCGCCGC
TCCAAAGACCTCCTCCGCCGCCGATCCCTCCTCGCTCGTCACCATGGAAC
CATCCACCCCCGTAGCCTCGCTCGCCACCCCCTCCGCCTCTGAGGCCATC
CCGGCCGTCCCGCTTCCAGTCGCTCCCAGCAAGAGCCGCATTCGTGCCGT
TCTACTATGGCGCGATCCAAAGGTTACCGGCGTCATCTTCGCCGCCGACA
TGCTCTTCTTCTATCTCACGCTCATCAGGGGCAACTCTGTGCTTTCCGTT
TGCGGACTTTTGTTCGGCTTGTACCTCGCCGTGCGTCTTGCCGCGGTCTA
TGCCAACAAACATATGGGTAACAAGTTTGATAAGTACCTTGCCCGTCCGC
CGCCATCCACACCCTTGTTTAGACGTGACTCCATGATGCGCATCGTCGAT
ACTATCGTCGAAGAAGGAAATGAGATAGCCGAACAGTTACGCGACATAAT
TCACTGCGATAAGCCAATCGTTGCCGCCAAGTGGATTTTCGTTGCCTTCG
TCATCTACCAAGCCGGCAAGTATTTCTCTATCGTCACCATCTGTTTTATC
GCTTCCCTTGCGTTGTTCTCTGTGCCCCTTCTGTATGAGAAGAATAAGAA
GCAAGTTGATGACGCTTTGGCGAAGGCCTCCGACACCGCCTCGCGGCACA
TTGAGTCCGGACGCCGTGCTGCCGCCGATCGCGCTGTCAAGCTTCGTGAT
GTTGCTGTGCAAAAGTCCACACCTTATCTCGAGAAAGCTCCACCAGTCGC
CAGGAATCTTGCTGAGAAGATGGGTCTCACGCCGAAGAAGATGCAGTAG

Coding sequence (CDS) from alignment at NODE_842_length_17153_cov_4.410796:2..850+

>Gcaud3068.t1 ID=Gcaud3068.t1|Name=Gcaud3068.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=849bp|location=Sequence derived from alignment at NODE_842_length_17153_cov_4.410796:2..850+ (Gracilaria caudata M_176_S67 male)
GCTCCCACCTTCCCCTCCTTCATCGATCAAGCGCCCACCGACGCCGCCGC
TCCAAAGACCTCCTCCGCCGCCGATCCCTCCTCGCTCGTCACCATGGAAC
CATCCACCCCCGTAGCCTCGCTCGCCACCCCCTCCGCCTCTGAGGCCATC
CCGGCCGTCCCGCTTCCAGTCGCTCCCAGCAAGAGCCGCATTCGTGCCGT
TCTACTATGGCGCGATCCAAAGGTTACCGGCGTCATCTTCGCCGCCGACA
TGCTCTTCTTCTATCTCACGCTCATCAGGGGCAACTCTGTGCTTTCCGTT
TGCGGACTTTTGTTCGGCTTGTACCTCGCCGTGCGTCTTGCCGCGGTCTA
TGCCAACAAACATATGGGTAACAAGTTTGATAAGTACCTTGCCCGTCCGC
CGCCATCCACACCCTTGTTTAGACGTGACTCCATGATGCGCATCGTCGAT
ACTATCGTCGAAGAAGGAAATGAGATAGCCGAACAGTTACGCGACATAAT
TCACTGCGATAAGCCAATCGTTGCCGCCAAGTGGATTTTCGTTGCCTTCG
TCATCTACCAAGCCGGCAAGTATTTCTCTATCGTCACCATCTGTTTTATC
GCTTCCCTTGCGTTGTTCTCTGTGCCCCTTCTGTATGAGAAGAATAAGAA
GCAAGTTGATGACGCTTTGGCGAAGGCCTCCGACACCGCCTCGCGGCACA
TTGAGTCCGGACGCCGTGCTGCCGCCGATCGCGCTGTCAAGCTTCGTGAT
GTTGCTGTGCAAAAGTCCACACCTTATCTCGAGAAAGCTCCACCAGTCGC
CAGGAATCTTGCTGAGAAGATGGGTCTCACGCCGAAGAAGATGCAGTAG