Gcaud3067.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3067.t1
Unique NameGcaud3067.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_634_length_20554_cov_4.126961contigNODE_634_length_20554_cov_4.126961:7934..8422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3067Gcaud3067Gracilaria caudata M_176_S67 malegeneNODE_634_length_20554_cov_4.126961 7934..8422 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3067.t1.stop1Gcaud3067.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_634_length_20554_cov_4.126961 7934..7936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3067.t1.CDS1Gcaud3067.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_634_length_20554_cov_4.126961 7934..8422 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3067.t1.exon1Gcaud3067.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_634_length_20554_cov_4.126961 7934..8422 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3067.t1.start1Gcaud3067.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_634_length_20554_cov_4.126961 8420..8422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3067.t1Gcaud3067.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_634_length_20554_cov_4.126961 7934..8422 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3067.t1 ID=Gcaud3067.t1|Name=Gcaud3067.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=163bp
MVERSQQRVKELELCDWRYGATAAECEQLRAVVDSFTESQGKKGTEIEQL
KQRVQKMTAQRKKACREIKKGNGIIDKHQNELRACRARRRVNSKLIAMPE
QVEGEREAKVGELQREVELVRDRAALLQVQKEGVDERLREALGKLEENRA
VLQSDQQVLIES*
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spliced messenger RNA

>Gcaud3067.t1 ID=Gcaud3067.t1|Name=Gcaud3067.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_634_length_20554_cov_4.126961:7934..8422- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGAGCGTAGCCAGCAGCGAGTCAAGGAGCTGGAGCTGTGTGACTG
GCGGTATGGAGCGACTGCCGCAGAATGTGAACAGCTTCGAGCGGTGGTGG
ACAGTTTTACAGAGAGCCAGGGCAAGAAGGGCACCGAAATTGAGCAGCTG
AAACAGCGCGTGCAAAAGATGACTGCGCAACGAAAAAAGGCTTGCAGGGA
AATCAAGAAGGGCAACGGCATCATCGACAAGCACCAAAACGAGTTGCGGG
CGTGTAGGGCAAGAAGACGGGTGAATAGCAAGCTGATTGCGATGCCGGAG
CAGGTGGAGGGTGAGAGGGAGGCGAAGGTGGGCGAGCTGCAGCGCGAGGT
GGAGCTGGTGCGCGATCGGGCAGCGCTGTTGCAGGTGCAGAAGGAGGGGG
TTGATGAGCGATTGCGCGAGGCGCTTGGAAAGTTGGAGGAAAACCGCGCG
GTGCTGCAGAGCGATCAGCAGGTATTAATCGAAAGTTGA
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protein sequence of Gcaud3067.t1

>Gcaud3067.t1 ID=Gcaud3067.t1|Name=Gcaud3067.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=163bp
MVERSQQRVKELELCDWRYGATAAECEQLRAVVDSFTESQGKKGTEIEQL
KQRVQKMTAQRKKACREIKKGNGIIDKHQNELRACRARRRVNSKLIAMPE
QVEGEREAKVGELQREVELVRDRAALLQVQKEGVDERLREALGKLEENRA
VLQSDQQVLIES*
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mRNA from alignment at NODE_634_length_20554_cov_4.126961:7934..8422-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3067.t1 ID=Gcaud3067.t1|Name=Gcaud3067.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_634_length_20554_cov_4.126961:7934..8422- (Gracilaria caudata M_176_S67 male)
ATGGTGGAGCGTAGCCAGCAGCGAGTCAAGGAGCTGGAGCTGTGTGACTG
GCGGTATGGAGCGACTGCCGCAGAATGTGAACAGCTTCGAGCGGTGGTGG
ACAGTTTTACAGAGAGCCAGGGCAAGAAGGGCACCGAAATTGAGCAGCTG
AAACAGCGCGTGCAAAAGATGACTGCGCAACGAAAAAAGGCTTGCAGGGA
AATCAAGAAGGGCAACGGCATCATCGACAAGCACCAAAACGAGTTGCGGG
CGTGTAGGGCAAGAAGACGGGTGAATAGCAAGCTGATTGCGATGCCGGAG
CAGGTGGAGGGTGAGAGGGAGGCGAAGGTGGGCGAGCTGCAGCGCGAGGT
GGAGCTGGTGCGCGATCGGGCAGCGCTGTTGCAGGTGCAGAAGGAGGGGG
TTGATGAGCGATTGCGCGAGGCGCTTGGAAAGTTGGAGGAAAACCGCGCG
GTGCTGCAGAGCGATCAGCAGGTATTAATCGAAAGTTGA
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Coding sequence (CDS) from alignment at NODE_634_length_20554_cov_4.126961:7934..8422-

>Gcaud3067.t1 ID=Gcaud3067.t1|Name=Gcaud3067.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=489bp|location=Sequence derived from alignment at NODE_634_length_20554_cov_4.126961:7934..8422- (Gracilaria caudata M_176_S67 male)
ATGGTGGAGCGTAGCCAGCAGCGAGTCAAGGAGCTGGAGCTGTGTGACTG
GCGGTATGGAGCGACTGCCGCAGAATGTGAACAGCTTCGAGCGGTGGTGG
ACAGTTTTACAGAGAGCCAGGGCAAGAAGGGCACCGAAATTGAGCAGCTG
AAACAGCGCGTGCAAAAGATGACTGCGCAACGAAAAAAGGCTTGCAGGGA
AATCAAGAAGGGCAACGGCATCATCGACAAGCACCAAAACGAGTTGCGGG
CGTGTAGGGCAAGAAGACGGGTGAATAGCAAGCTGATTGCGATGCCGGAG
CAGGTGGAGGGTGAGAGGGAGGCGAAGGTGGGCGAGCTGCAGCGCGAGGT
GGAGCTGGTGCGCGATCGGGCAGCGCTGTTGCAGGTGCAGAAGGAGGGGG
TTGATGAGCGATTGCGCGAGGCGCTTGGAAAGTTGGAGGAAAACCGCGCG
GTGCTGCAGAGCGATCAGCAGGTATTAATCGAAAGTTGA
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