Gcaud3066.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3066.t1
Unique NameGcaud3066.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length87
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_634_length_20554_cov_4.126961contigNODE_634_length_20554_cov_4.126961:5469..5872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog264951.V5I628
Preferred namecyp15
PFAMsPro_isomerase,WD40
Max annot lvl4751|Fungi
KEGG koko:K12736
GOsGO:0000228,GO:0000413,GO:0000785,GO:0000790,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0036211,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue2.13e-19
EggNOG OGsKOG0882@1|root,KOG0882@2759|Eukaryota,38E5A@33154|Opisthokonta,3NXBP@4751|Fungi,3QNQU@4890|Ascomycota,20CFT@147545|Eurotiomycetes,3S7WI@5042|Eurotiales
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3066Gcaud3066Gracilaria caudata M_176_S67 malegeneNODE_634_length_20554_cov_4.126961 5469..5872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3066.t1Gcaud3066.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_634_length_20554_cov_4.126961 5469..5872 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3066.t1.start1Gcaud3066.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_634_length_20554_cov_4.126961 5469..5471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3066.t1.CDS1Gcaud3066.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_634_length_20554_cov_4.126961 5469..5615 +
Gcaud3066.t1.CDS2Gcaud3066.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_634_length_20554_cov_4.126961 5759..5872 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3066.t1.exon1Gcaud3066.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_634_length_20554_cov_4.126961 5469..5615 +
Gcaud3066.t1.exon2Gcaud3066.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_634_length_20554_cov_4.126961 5759..5872 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3066.t1.intron1Gcaud3066.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_634_length_20554_cov_4.126961 5616..5758 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3066.t1.stop1Gcaud3066.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_634_length_20554_cov_4.126961 5870..5872 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3066.t1 ID=Gcaud3066.t1|Name=Gcaud3066.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=87bp
MVQTSDLDGDGTGGESIWGTEVKDEMNASLKHEVGTMSMANAGPDTNGSQ
FFVTCEATLHLNGKHTVFPKSCLRFRAPAFGDERCW*
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spliced messenger RNA

>Gcaud3066.t1 ID=Gcaud3066.t1|Name=Gcaud3066.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=261bp|location=Sequence derived from alignment at NODE_634_length_20554_cov_4.126961:5469..5872+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACAAACTAGTGATCTCGATGGCGATGGAACGGGTGGTGAGTCTAT
CTGGGGCACTGAAGTTAAAGATGAGATGAACGCTTCACTTAAACATGAAG
TCGGCACCATGTCGATGGCCAACGCAGGACCCGACACAAACGGATCGCAA
TTCTTCGTTACATGTGAGGCTACTCTACATTTAAATGGAAAGCACACTGT
GTTTCCTAAGTCATGCCTGAGATTCAGAGCACCTGCATTCGGAGATGAAC
GTTGCTGGTAG
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protein sequence of Gcaud3066.t1

>Gcaud3066.t1 ID=Gcaud3066.t1|Name=Gcaud3066.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=87bp
MVQTSDLDGDGTGGESIWGTEVKDEMNASLKHEVGTMSMANAGPDTNGSQ
FFVTCEATLHLNGKHTVFPKSCLRFRAPAFGDERCW*
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mRNA from alignment at NODE_634_length_20554_cov_4.126961:5469..5872+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3066.t1 ID=Gcaud3066.t1|Name=Gcaud3066.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=404bp|location=Sequence derived from alignment at NODE_634_length_20554_cov_4.126961:5469..5872+ (Gracilaria caudata M_176_S67 male)
ATGGTACAAACTAGTGATCTCGATGGCGATGGAACGGGTGGTGAGTCTAT
CTGGGGCACTGAAGTTAAAGATGAGATGAACGCTTCACTTAAACATGAAG
TCGGCACCATGTCGATGGCCAACGCAGGACCCGACACAAACGGATCGGTG
AGTCGTATTCTACCTTACTTTCTTTTCCTACCGCTGAATTCACGTCACTA
GCGGTTTTGATGAGCATGCTGTGATTGCTGCCACTTTGTTACTAACTAGT
GCGCTGTAAATTCTTACCTCTGTGTCACGCGCCTTGGTAGCAATTCTTCG
TTACATGTGAGGCTACTCTACATTTAAATGGAAAGCACACTGTGTTTCCT
AAGTCATGCCTGAGATTCAGAGCACCTGCATTCGGAGATGAACGTTGCTG
GTAG
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Coding sequence (CDS) from alignment at NODE_634_length_20554_cov_4.126961:5469..5872+

>Gcaud3066.t1 ID=Gcaud3066.t1|Name=Gcaud3066.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=261bp|location=Sequence derived from alignment at NODE_634_length_20554_cov_4.126961:5469..5872+ (Gracilaria caudata M_176_S67 male)
ATGGTACAAACTAGTGATCTCGATGGCGATGGAACGGGTGGTGAGTCTAT
CTGGGGCACTGAAGTTAAAGATGAGATGAACGCTTCACTTAAACATGAAG
TCGGCACCATGTCGATGGCCAACGCAGGACCCGACACAAACGGATCGCAA
TTCTTCGTTACATGTGAGGCTACTCTACATTTAAATGGAAAGCACACTGT
GTTTCCTAAGTCATGCCTGAGATTCAGAGCACCTGCATTCGGAGATGAAC
GTTGCTGGTAG
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