Gcaud3064.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3064.t1
Unique Name	Gcaud3064.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	729

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1950_length_7502_cov_4.683174	contig	NODE_1950_length_7502_cov_4.683174:5316..7502 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704024.1
Preferred name	PUS1
PFAMs	PseudoU_synth_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06173,ko:K20674
KEGG Pathway	ko04624,map04624
GOs	GO:0000049,GO:0000959,GO:0000963,GO:0001522,GO:0002153,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009982,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0019219,GO:0019222,GO:0030374,GO:0031119,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070525,GO:0070900,GO:0070902,GO:0071704,GO:0080090,GO:0090304,GO:0090646,GO:0097159,GO:0106029,GO:0140053,GO:0140098,GO:0140101,GO:0140110,GO:1900864,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990481,GO:2000112,GO:2001141
Evalue	2.53e-62
EggNOG OGs	COG0101@1\|root,KOG2553@2759\|Eukaryota
EC	5.4.99.12
Description	pseudouridine synthase activity
COG category	J
BRITE	ko00000,ko00001,ko01000,ko01002,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3064	Gcaud3064	Gracilaria caudata M_176_S67 male	gene	NODE_1950_length_7502_cov_4.683174 5316..7502 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3064.t1.start1	Gcaud3064.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1950_length_7502_cov_4.683174 5316..5318 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3064.t1.CDS1	Gcaud3064.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1950_length_7502_cov_4.683174 5316..7502 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3064.t1.exon1	Gcaud3064.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1950_length_7502_cov_4.683174 5316..7502 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3064.t1	Gcaud3064.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1950_length_7502_cov_4.683174 5316..7502 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1950_length_7502_cov_4.683174:5316..7502+
coding sequence from alignment at NODE_1950_length_7502_cov_4.683174:5316..7502+

mRNA sequence

>Gcaud3064.t1 ID=Gcaud3064.t1|Name=Gcaud3064.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=729bp
MGSYFSHVTEEEAHSKRNVQEQNREARDGNHDQRPRKKRKLTKRTDKAIA
PPTRAMKTIPKDNGTMVGKNQDTAPTTRKTISHYQRNRESSIIVNGQSPE
AETPVPPDPDQKRIRKRKYAVFLGYNGEKYYGMQINPGVVTIEQVLLAGF
HRAGLVSDENKDSPGKVQWMRAARTDKGVSAIVQCVSVKLELPYERMYDQ
SVIGSINHHLPEDVQVYGLLRPTGGFNARSNCHRRRYEYIFPVRLLGGPN
GVETEGKYGDGDPRVAKLTSILKRFEGTHCFANFTEGLSGSEDASKRYMI
SLKCGQPFKPPKSGVYYVSIEIFGQSFLLHQIRKMVGLSLYVYLGHAPDE
IISVALCPNVKLHTPMAPALGLLLENLVFDNYNKRFKHTLERPISSDAFE
EARLKFKTQQVYRRIAEKEREERILEAWVKNCRERFQYNHDEVLDLHQKF
VLTDVGKEEQRKEYVASLYPIKTNMEEFLESESEDLRTLATGLRNMFEER
YGVSPSFMARAPGRVILIGEHLDYNGLPVIGVALPQGSMLAGCLDKTDVI
EIQHARNDMYQSGKLRADGFRMVLENEDSSLDSDWIQYVSWGVKSVFQSI
AKGKRTVSGGGRLLLDGDLPLAAGLASSSSLVTLSALATARLNRKRFPKQ
ELALLAAEGERVGAGTRGGAVDHIMSACGRKRCATLVSFIPRVNVNSLRL
PSNASLIAVGSHVKARKGFDKYVKEQFNL

spliced messenger RNA

>Gcaud3064.t1 ID=Gcaud3064.t1|Name=Gcaud3064.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2187bp|location=Sequence derived from alignment at NODE_1950_length_7502_cov_4.683174:5316..7502+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATCGTACTTTTCTCACGTGACAGAGGAGGAGGCGCATTCTAAACG
CAATGTTCAAGAACAGAACAGAGAAGCTCGCGACGGCAACCATGATCAAA
GACCGCGGAAGAAGAGGAAATTAACGAAGCGAACTGACAAAGCAATCGCA
CCTCCTACTCGGGCGATGAAAACCATTCCCAAGGACAATGGAACAATGGT
GGGAAAAAACCAAGACACAGCGCCAACCACTCGAAAGACTATTTCTCATT
ACCAAAGAAACCGCGAATCTTCAATTATCGTGAATGGCCAGTCCCCAGAG
GCAGAGACGCCAGTTCCCCCAGACCCAGACCAGAAGCGTATTCGTAAACG
AAAGTACGCGGTTTTCCTCGGGTACAACGGTGAAAAGTATTACGGAATGC
AGATTAATCCAGGGGTCGTTACTATTGAGCAGGTGCTATTGGCCGGTTTT
CATAGAGCTGGATTGGTATCTGATGAGAACAAAGATTCTCCAGGAAAAGT
GCAATGGATGCGAGCGGCCAGAACTGACAAAGGAGTTTCTGCTATCGTTC
AATGCGTTTCCGTGAAGCTGGAGTTACCTTATGAGAGGATGTATGACCAG
TCCGTAATAGGTTCTATAAACCATCACCTCCCTGAAGATGTTCAAGTCTA
CGGATTGCTTCGTCCAACTGGTGGCTTCAATGCCCGGTCGAATTGTCATC
GCCGTCGATATGAGTATATATTTCCAGTCCGATTGTTAGGTGGACCAAAT
GGTGTTGAAACGGAAGGAAAGTATGGAGATGGAGATCCAAGGGTCGCAAA
ATTGACCTCTATTCTGAAACGCTTTGAAGGCACTCACTGTTTTGCTAACT
TCACAGAGGGTTTAAGTGGCTCTGAGGATGCTTCCAAACGATACATGATC
AGTTTGAAATGCGGACAGCCTTTCAAGCCTCCCAAGTCCGGTGTGTACTA
CGTTTCCATAGAGATTTTTGGCCAAAGCTTCTTGTTACACCAGATAAGAA
AGATGGTTGGCTTGTCACTTTACGTGTATTTGGGTCACGCTCCAGACGAG
ATCATTTCCGTTGCTCTGTGTCCTAATGTGAAGCTTCACACACCGATGGC
ACCAGCCCTTGGCCTTCTCTTGGAGAATCTCGTCTTTGACAATTACAACA
AACGATTTAAGCATACTCTTGAACGTCCTATTTCTTCTGACGCGTTTGAA
GAAGCCAGGTTGAAATTCAAAACTCAGCAGGTCTATCGCAGGATTGCTGA
GAAGGAGAGAGAGGAAAGAATCCTTGAAGCATGGGTAAAGAATTGCCGAG
AACGGTTTCAGTACAACCATGATGAGGTTCTCGATCTTCATCAAAAATTT
GTGTTGACGGATGTCGGAAAAGAAGAACAACGCAAAGAATATGTTGCCTC
TCTGTATCCAATTAAGACTAACATGGAAGAATTTCTGGAGTCTGAATCCG
AAGACTTGAGGACATTGGCAACGGGCTTGCGTAATATGTTTGAGGAGAGA
TATGGCGTGTCTCCATCGTTCATGGCTCGTGCGCCTGGTAGAGTCATCCT
CATAGGCGAGCATCTCGACTATAACGGTTTGCCGGTCATCGGCGTAGCTC
TTCCACAAGGATCAATGCTCGCTGGATGCCTGGATAAAACTGATGTGATC
GAGATACAACATGCACGAAATGACATGTATCAAAGCGGAAAACTTCGAGC
GGATGGATTTCGAATGGTGCTCGAAAATGAGGACTCAAGTCTGGATTCAG
ACTGGATACAGTACGTTTCATGGGGCGTGAAATCGGTGTTTCAAAGTATA
GCCAAAGGAAAGAGAACTGTCTCTGGCGGCGGGCGTTTGCTACTGGACGG
AGATCTTCCTCTTGCGGCTGGGCTAGCGTCGAGCTCCTCGCTAGTGACTT
TGTCAGCTTTGGCAACAGCAAGACTAAATCGAAAGAGATTCCCAAAACAA
GAGCTGGCTTTGCTAGCCGCAGAAGGCGAGCGTGTTGGTGCGGGTACACG
AGGAGGAGCGGTGGATCATATAATGAGCGCATGTGGGCGAAAACGTTGCG
CAACACTAGTATCGTTTATACCGAGAGTCAATGTCAATTCCTTACGTTTG
CCATCGAATGCCTCCTTAATCGCAGTTGGGAGTCATGTTAAAGCTCGAAA
AGGTTTTGATAAGTATGTGAAAGAACAATTCAACCTG

protein sequence of Gcaud3064.t1

>Gcaud3064.t1 ID=Gcaud3064.t1|Name=Gcaud3064.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=729bp
MGSYFSHVTEEEAHSKRNVQEQNREARDGNHDQRPRKKRKLTKRTDKAIA
PPTRAMKTIPKDNGTMVGKNQDTAPTTRKTISHYQRNRESSIIVNGQSPE
AETPVPPDPDQKRIRKRKYAVFLGYNGEKYYGMQINPGVVTIEQVLLAGF
HRAGLVSDENKDSPGKVQWMRAARTDKGVSAIVQCVSVKLELPYERMYDQ
SVIGSINHHLPEDVQVYGLLRPTGGFNARSNCHRRRYEYIFPVRLLGGPN
GVETEGKYGDGDPRVAKLTSILKRFEGTHCFANFTEGLSGSEDASKRYMI
SLKCGQPFKPPKSGVYYVSIEIFGQSFLLHQIRKMVGLSLYVYLGHAPDE
IISVALCPNVKLHTPMAPALGLLLENLVFDNYNKRFKHTLERPISSDAFE
EARLKFKTQQVYRRIAEKEREERILEAWVKNCRERFQYNHDEVLDLHQKF
VLTDVGKEEQRKEYVASLYPIKTNMEEFLESESEDLRTLATGLRNMFEER
YGVSPSFMARAPGRVILIGEHLDYNGLPVIGVALPQGSMLAGCLDKTDVI
EIQHARNDMYQSGKLRADGFRMVLENEDSSLDSDWIQYVSWGVKSVFQSI
AKGKRTVSGGGRLLLDGDLPLAAGLASSSSLVTLSALATARLNRKRFPKQ
ELALLAAEGERVGAGTRGGAVDHIMSACGRKRCATLVSFIPRVNVNSLRL
PSNASLIAVGSHVKARKGFDKYVKEQFNL

mRNA from alignment at NODE_1950_length_7502_cov_4.683174:5316..7502+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3064.t1 ID=Gcaud3064.t1|Name=Gcaud3064.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2187bp|location=Sequence derived from alignment at NODE_1950_length_7502_cov_4.683174:5316..7502+ (Gracilaria caudata M_176_S67 male)
ATGGGATCGTACTTTTCTCACGTGACAGAGGAGGAGGCGCATTCTAAACG
CAATGTTCAAGAACAGAACAGAGAAGCTCGCGACGGCAACCATGATCAAA
GACCGCGGAAGAAGAGGAAATTAACGAAGCGAACTGACAAAGCAATCGCA
CCTCCTACTCGGGCGATGAAAACCATTCCCAAGGACAATGGAACAATGGT
GGGAAAAAACCAAGACACAGCGCCAACCACTCGAAAGACTATTTCTCATT
ACCAAAGAAACCGCGAATCTTCAATTATCGTGAATGGCCAGTCCCCAGAG
GCAGAGACGCCAGTTCCCCCAGACCCAGACCAGAAGCGTATTCGTAAACG
AAAGTACGCGGTTTTCCTCGGGTACAACGGTGAAAAGTATTACGGAATGC
AGATTAATCCAGGGGTCGTTACTATTGAGCAGGTGCTATTGGCCGGTTTT
CATAGAGCTGGATTGGTATCTGATGAGAACAAAGATTCTCCAGGAAAAGT
GCAATGGATGCGAGCGGCCAGAACTGACAAAGGAGTTTCTGCTATCGTTC
AATGCGTTTCCGTGAAGCTGGAGTTACCTTATGAGAGGATGTATGACCAG
TCCGTAATAGGTTCTATAAACCATCACCTCCCTGAAGATGTTCAAGTCTA
CGGATTGCTTCGTCCAACTGGTGGCTTCAATGCCCGGTCGAATTGTCATC
GCCGTCGATATGAGTATATATTTCCAGTCCGATTGTTAGGTGGACCAAAT
GGTGTTGAAACGGAAGGAAAGTATGGAGATGGAGATCCAAGGGTCGCAAA
ATTGACCTCTATTCTGAAACGCTTTGAAGGCACTCACTGTTTTGCTAACT
TCACAGAGGGTTTAAGTGGCTCTGAGGATGCTTCCAAACGATACATGATC
AGTTTGAAATGCGGACAGCCTTTCAAGCCTCCCAAGTCCGGTGTGTACTA
CGTTTCCATAGAGATTTTTGGCCAAAGCTTCTTGTTACACCAGATAAGAA
AGATGGTTGGCTTGTCACTTTACGTGTATTTGGGTCACGCTCCAGACGAG
ATCATTTCCGTTGCTCTGTGTCCTAATGTGAAGCTTCACACACCGATGGC
ACCAGCCCTTGGCCTTCTCTTGGAGAATCTCGTCTTTGACAATTACAACA
AACGATTTAAGCATACTCTTGAACGTCCTATTTCTTCTGACGCGTTTGAA
GAAGCCAGGTTGAAATTCAAAACTCAGCAGGTCTATCGCAGGATTGCTGA
GAAGGAGAGAGAGGAAAGAATCCTTGAAGCATGGGTAAAGAATTGCCGAG
AACGGTTTCAGTACAACCATGATGAGGTTCTCGATCTTCATCAAAAATTT
GTGTTGACGGATGTCGGAAAAGAAGAACAACGCAAAGAATATGTTGCCTC
TCTGTATCCAATTAAGACTAACATGGAAGAATTTCTGGAGTCTGAATCCG
AAGACTTGAGGACATTGGCAACGGGCTTGCGTAATATGTTTGAGGAGAGA
TATGGCGTGTCTCCATCGTTCATGGCTCGTGCGCCTGGTAGAGTCATCCT
CATAGGCGAGCATCTCGACTATAACGGTTTGCCGGTCATCGGCGTAGCTC
TTCCACAAGGATCAATGCTCGCTGGATGCCTGGATAAAACTGATGTGATC
GAGATACAACATGCACGAAATGACATGTATCAAAGCGGAAAACTTCGAGC
GGATGGATTTCGAATGGTGCTCGAAAATGAGGACTCAAGTCTGGATTCAG
ACTGGATACAGTACGTTTCATGGGGCGTGAAATCGGTGTTTCAAAGTATA
GCCAAAGGAAAGAGAACTGTCTCTGGCGGCGGGCGTTTGCTACTGGACGG
AGATCTTCCTCTTGCGGCTGGGCTAGCGTCGAGCTCCTCGCTAGTGACTT
TGTCAGCTTTGGCAACAGCAAGACTAAATCGAAAGAGATTCCCAAAACAA
GAGCTGGCTTTGCTAGCCGCAGAAGGCGAGCGTGTTGGTGCGGGTACACG
AGGAGGAGCGGTGGATCATATAATGAGCGCATGTGGGCGAAAACGTTGCG
CAACACTAGTATCGTTTATACCGAGAGTCAATGTCAATTCCTTACGTTTG
CCATCGAATGCCTCCTTAATCGCAGTTGGGAGTCATGTTAAAGCTCGAAA
AGGTTTTGATAAGTATGTGAAAGAACAATTCAACCTG

Coding sequence (CDS) from alignment at NODE_1950_length_7502_cov_4.683174:5316..7502+

>Gcaud3064.t1 ID=Gcaud3064.t1|Name=Gcaud3064.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2187bp|location=Sequence derived from alignment at NODE_1950_length_7502_cov_4.683174:5316..7502+ (Gracilaria caudata M_176_S67 male)
ATGGGATCGTACTTTTCTCACGTGACAGAGGAGGAGGCGCATTCTAAACG
CAATGTTCAAGAACAGAACAGAGAAGCTCGCGACGGCAACCATGATCAAA
GACCGCGGAAGAAGAGGAAATTAACGAAGCGAACTGACAAAGCAATCGCA
CCTCCTACTCGGGCGATGAAAACCATTCCCAAGGACAATGGAACAATGGT
GGGAAAAAACCAAGACACAGCGCCAACCACTCGAAAGACTATTTCTCATT
ACCAAAGAAACCGCGAATCTTCAATTATCGTGAATGGCCAGTCCCCAGAG
GCAGAGACGCCAGTTCCCCCAGACCCAGACCAGAAGCGTATTCGTAAACG
AAAGTACGCGGTTTTCCTCGGGTACAACGGTGAAAAGTATTACGGAATGC
AGATTAATCCAGGGGTCGTTACTATTGAGCAGGTGCTATTGGCCGGTTTT
CATAGAGCTGGATTGGTATCTGATGAGAACAAAGATTCTCCAGGAAAAGT
GCAATGGATGCGAGCGGCCAGAACTGACAAAGGAGTTTCTGCTATCGTTC
AATGCGTTTCCGTGAAGCTGGAGTTACCTTATGAGAGGATGTATGACCAG
TCCGTAATAGGTTCTATAAACCATCACCTCCCTGAAGATGTTCAAGTCTA
CGGATTGCTTCGTCCAACTGGTGGCTTCAATGCCCGGTCGAATTGTCATC
GCCGTCGATATGAGTATATATTTCCAGTCCGATTGTTAGGTGGACCAAAT
GGTGTTGAAACGGAAGGAAAGTATGGAGATGGAGATCCAAGGGTCGCAAA
ATTGACCTCTATTCTGAAACGCTTTGAAGGCACTCACTGTTTTGCTAACT
TCACAGAGGGTTTAAGTGGCTCTGAGGATGCTTCCAAACGATACATGATC
AGTTTGAAATGCGGACAGCCTTTCAAGCCTCCCAAGTCCGGTGTGTACTA
CGTTTCCATAGAGATTTTTGGCCAAAGCTTCTTGTTACACCAGATAAGAA
AGATGGTTGGCTTGTCACTTTACGTGTATTTGGGTCACGCTCCAGACGAG
ATCATTTCCGTTGCTCTGTGTCCTAATGTGAAGCTTCACACACCGATGGC
ACCAGCCCTTGGCCTTCTCTTGGAGAATCTCGTCTTTGACAATTACAACA
AACGATTTAAGCATACTCTTGAACGTCCTATTTCTTCTGACGCGTTTGAA
GAAGCCAGGTTGAAATTCAAAACTCAGCAGGTCTATCGCAGGATTGCTGA
GAAGGAGAGAGAGGAAAGAATCCTTGAAGCATGGGTAAAGAATTGCCGAG
AACGGTTTCAGTACAACCATGATGAGGTTCTCGATCTTCATCAAAAATTT
GTGTTGACGGATGTCGGAAAAGAAGAACAACGCAAAGAATATGTTGCCTC
TCTGTATCCAATTAAGACTAACATGGAAGAATTTCTGGAGTCTGAATCCG
AAGACTTGAGGACATTGGCAACGGGCTTGCGTAATATGTTTGAGGAGAGA
TATGGCGTGTCTCCATCGTTCATGGCTCGTGCGCCTGGTAGAGTCATCCT
CATAGGCGAGCATCTCGACTATAACGGTTTGCCGGTCATCGGCGTAGCTC
TTCCACAAGGATCAATGCTCGCTGGATGCCTGGATAAAACTGATGTGATC
GAGATACAACATGCACGAAATGACATGTATCAAAGCGGAAAACTTCGAGC
GGATGGATTTCGAATGGTGCTCGAAAATGAGGACTCAAGTCTGGATTCAG
ACTGGATACAGTACGTTTCATGGGGCGTGAAATCGGTGTTTCAAAGTATA
GCCAAAGGAAAGAGAACTGTCTCTGGCGGCGGGCGTTTGCTACTGGACGG
AGATCTTCCTCTTGCGGCTGGGCTAGCGTCGAGCTCCTCGCTAGTGACTT
TGTCAGCTTTGGCAACAGCAAGACTAAATCGAAAGAGATTCCCAAAACAA
GAGCTGGCTTTGCTAGCCGCAGAAGGCGAGCGTGTTGGTGCGGGTACACG
AGGAGGAGCGGTGGATCATATAATGAGCGCATGTGGGCGAAAACGTTGCG
CAACACTAGTATCGTTTATACCGAGAGTCAATGTCAATTCCTTACGTTTG
CCATCGAATGCCTCCTTAATCGCAGTTGGGAGTCATGTTAAAGCTCGAAA
AGGTTTTGATAAGTATGTGAAAGAACAATTCAACCTG