Gcaud3063.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3063.t1
Unique NameGcaud3063.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1950_length_7502_cov_4.683174contigNODE_1950_length_7502_cov_4.683174:3305..4543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog479434.Sthe_2312
PFAMsFAD_binding_3
Max annot lvl189775|Thermomicrobia
KEGG rclassRC00046
KEGG koko:K19189
KEGG ReactionR04130
KEGG Pathwayko00760,ko01120,map00760,map01120
Evalue2.25e-89
EggNOG OGsCOG0654@1|root,COG0654@2|Bacteria,2GBDX@200795|Chloroflexi,27Z1B@189775|Thermomicrobia
EC1.14.13.10
DescriptionFAD binding domain
COG categoryCH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3063Gcaud3063Gracilaria caudata M_176_S67 malegeneNODE_1950_length_7502_cov_4.683174 3305..4543 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3063.t1.stop1Gcaud3063.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1950_length_7502_cov_4.683174 3305..3307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3063.t1.CDS1Gcaud3063.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1950_length_7502_cov_4.683174 3305..4543 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3063.t1.exon1Gcaud3063.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1950_length_7502_cov_4.683174 3305..4543 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3063.t1.start1Gcaud3063.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1950_length_7502_cov_4.683174 4541..4543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3063.t1Gcaud3063.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1950_length_7502_cov_4.683174 3305..4543 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3063.t1 ID=Gcaud3063.t1|Name=Gcaud3063.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=413bp
MSDAQTAIIVGGSLGGLAAAISLRDIGFSVSVFERSHQYLSGKGAGIGLN
PHMLSFIRAHPRFGLSEHSLTVTKFRYLDLDHEKHREHNISLGLSSYNSV
YKALLELLGIKDYHLARNVTGISQTTETVTVTTSDGTQHFCDLLVCADGG
GSNSKHIFTSGKEPKYAGYFAWRGIVKDDQLPSYLRERFEEAVTFHLRPD
GHILSYPIPYFEADENGTLVRSTYINWLWYRNLPNQDQLENFLVDSAGKK
RLKSVPRGCVPSHRVEALKNDASTLQYDFRQLVNLTQDPFIQPLFDYGTE
KMVLGRICLLGDAAFSVRPHVAVGTAKAWDDAVHLAYFLKQPGRDLHSAL
HAWEEKQLALGKQLLKRSVELGNMLQTGTWNYDRPSPFGLYEAGDSYNWS
DAAHSLHSTSLI*
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spliced messenger RNA

>Gcaud3063.t1 ID=Gcaud3063.t1|Name=Gcaud3063.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at NODE_1950_length_7502_cov_4.683174:3305..4543- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGATGCACAAACAGCGATAATTGTCGGGGGCAGCTTGGGAGGTTT
GGCGGCAGCGATTTCCCTCCGTGACATCGGGTTTTCAGTCTCTGTTTTCG
AGCGGTCCCACCAATACTTGTCTGGAAAAGGAGCAGGCATAGGTCTCAAC
CCTCATATGTTATCCTTCATTCGAGCTCATCCCCGTTTCGGACTTTCTGA
ACATAGTCTTACAGTCACGAAGTTTCGGTACTTAGATCTCGATCATGAGA
AGCATCGGGAGCACAATATCAGTCTTGGCTTGTCGTCTTACAACTCGGTA
TACAAGGCATTGCTCGAACTACTTGGAATTAAGGACTATCATCTGGCAAG
AAACGTTACAGGTATCTCTCAAACCACAGAAACAGTTACAGTAACAACTT
CAGATGGGACTCAACACTTTTGTGACCTCCTCGTCTGTGCGGATGGCGGT
GGATCAAACTCGAAGCACATATTTACTTCCGGAAAGGAACCAAAATATGC
AGGATACTTTGCATGGAGAGGTATCGTGAAGGATGACCAGCTGCCGTCGT
ACTTGAGGGAACGCTTTGAAGAGGCTGTGACATTTCATCTGAGACCAGAT
GGACATATATTATCTTACCCAATTCCTTACTTCGAGGCTGATGAAAACGG
GACATTGGTAAGGTCAACTTATATAAACTGGTTGTGGTACAGGAATCTGC
CGAACCAGGATCAGTTAGAAAACTTCCTCGTTGACTCAGCAGGAAAAAAG
AGACTGAAATCTGTACCAAGAGGGTGCGTGCCCTCTCACCGTGTAGAAGC
ACTGAAGAACGACGCGTCCACTTTACAATACGATTTTCGACAGTTAGTTA
ACCTTACCCAAGACCCATTCATTCAGCCATTATTCGATTATGGTACAGAA
AAGATGGTTCTCGGTAGAATATGTTTGCTTGGAGACGCCGCTTTTTCTGT
CCGGCCTCACGTAGCAGTCGGAACAGCGAAAGCATGGGATGATGCGGTTC
ACTTGGCATATTTTCTGAAGCAGCCTGGACGGGACCTTCATTCGGCTCTG
CACGCCTGGGAAGAAAAGCAACTCGCTTTAGGAAAACAGTTGCTGAAGAG
AAGCGTGGAGCTTGGGAATATGCTTCAAACTGGAACTTGGAACTATGATC
GACCATCCCCATTCGGTCTGTACGAGGCAGGAGACTCTTATAATTGGAGT
GATGCCGCTCACAGTCTTCATTCTACGTCACTCATATGA
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protein sequence of Gcaud3063.t1

>Gcaud3063.t1 ID=Gcaud3063.t1|Name=Gcaud3063.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=413bp
MSDAQTAIIVGGSLGGLAAAISLRDIGFSVSVFERSHQYLSGKGAGIGLN
PHMLSFIRAHPRFGLSEHSLTVTKFRYLDLDHEKHREHNISLGLSSYNSV
YKALLELLGIKDYHLARNVTGISQTTETVTVTTSDGTQHFCDLLVCADGG
GSNSKHIFTSGKEPKYAGYFAWRGIVKDDQLPSYLRERFEEAVTFHLRPD
GHILSYPIPYFEADENGTLVRSTYINWLWYRNLPNQDQLENFLVDSAGKK
RLKSVPRGCVPSHRVEALKNDASTLQYDFRQLVNLTQDPFIQPLFDYGTE
KMVLGRICLLGDAAFSVRPHVAVGTAKAWDDAVHLAYFLKQPGRDLHSAL
HAWEEKQLALGKQLLKRSVELGNMLQTGTWNYDRPSPFGLYEAGDSYNWS
DAAHSLHSTSLI*
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mRNA from alignment at NODE_1950_length_7502_cov_4.683174:3305..4543-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3063.t1 ID=Gcaud3063.t1|Name=Gcaud3063.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at NODE_1950_length_7502_cov_4.683174:3305..4543- (Gracilaria caudata M_176_S67 male)
ATGTCTGATGCACAAACAGCGATAATTGTCGGGGGCAGCTTGGGAGGTTT
GGCGGCAGCGATTTCCCTCCGTGACATCGGGTTTTCAGTCTCTGTTTTCG
AGCGGTCCCACCAATACTTGTCTGGAAAAGGAGCAGGCATAGGTCTCAAC
CCTCATATGTTATCCTTCATTCGAGCTCATCCCCGTTTCGGACTTTCTGA
ACATAGTCTTACAGTCACGAAGTTTCGGTACTTAGATCTCGATCATGAGA
AGCATCGGGAGCACAATATCAGTCTTGGCTTGTCGTCTTACAACTCGGTA
TACAAGGCATTGCTCGAACTACTTGGAATTAAGGACTATCATCTGGCAAG
AAACGTTACAGGTATCTCTCAAACCACAGAAACAGTTACAGTAACAACTT
CAGATGGGACTCAACACTTTTGTGACCTCCTCGTCTGTGCGGATGGCGGT
GGATCAAACTCGAAGCACATATTTACTTCCGGAAAGGAACCAAAATATGC
AGGATACTTTGCATGGAGAGGTATCGTGAAGGATGACCAGCTGCCGTCGT
ACTTGAGGGAACGCTTTGAAGAGGCTGTGACATTTCATCTGAGACCAGAT
GGACATATATTATCTTACCCAATTCCTTACTTCGAGGCTGATGAAAACGG
GACATTGGTAAGGTCAACTTATATAAACTGGTTGTGGTACAGGAATCTGC
CGAACCAGGATCAGTTAGAAAACTTCCTCGTTGACTCAGCAGGAAAAAAG
AGACTGAAATCTGTACCAAGAGGGTGCGTGCCCTCTCACCGTGTAGAAGC
ACTGAAGAACGACGCGTCCACTTTACAATACGATTTTCGACAGTTAGTTA
ACCTTACCCAAGACCCATTCATTCAGCCATTATTCGATTATGGTACAGAA
AAGATGGTTCTCGGTAGAATATGTTTGCTTGGAGACGCCGCTTTTTCTGT
CCGGCCTCACGTAGCAGTCGGAACAGCGAAAGCATGGGATGATGCGGTTC
ACTTGGCATATTTTCTGAAGCAGCCTGGACGGGACCTTCATTCGGCTCTG
CACGCCTGGGAAGAAAAGCAACTCGCTTTAGGAAAACAGTTGCTGAAGAG
AAGCGTGGAGCTTGGGAATATGCTTCAAACTGGAACTTGGAACTATGATC
GACCATCCCCATTCGGTCTGTACGAGGCAGGAGACTCTTATAATTGGAGT
GATGCCGCTCACAGTCTTCATTCTACGTCACTCATATGA
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Coding sequence (CDS) from alignment at NODE_1950_length_7502_cov_4.683174:3305..4543-

>Gcaud3063.t1 ID=Gcaud3063.t1|Name=Gcaud3063.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1239bp|location=Sequence derived from alignment at NODE_1950_length_7502_cov_4.683174:3305..4543- (Gracilaria caudata M_176_S67 male)
ATGTCTGATGCACAAACAGCGATAATTGTCGGGGGCAGCTTGGGAGGTTT
GGCGGCAGCGATTTCCCTCCGTGACATCGGGTTTTCAGTCTCTGTTTTCG
AGCGGTCCCACCAATACTTGTCTGGAAAAGGAGCAGGCATAGGTCTCAAC
CCTCATATGTTATCCTTCATTCGAGCTCATCCCCGTTTCGGACTTTCTGA
ACATAGTCTTACAGTCACGAAGTTTCGGTACTTAGATCTCGATCATGAGA
AGCATCGGGAGCACAATATCAGTCTTGGCTTGTCGTCTTACAACTCGGTA
TACAAGGCATTGCTCGAACTACTTGGAATTAAGGACTATCATCTGGCAAG
AAACGTTACAGGTATCTCTCAAACCACAGAAACAGTTACAGTAACAACTT
CAGATGGGACTCAACACTTTTGTGACCTCCTCGTCTGTGCGGATGGCGGT
GGATCAAACTCGAAGCACATATTTACTTCCGGAAAGGAACCAAAATATGC
AGGATACTTTGCATGGAGAGGTATCGTGAAGGATGACCAGCTGCCGTCGT
ACTTGAGGGAACGCTTTGAAGAGGCTGTGACATTTCATCTGAGACCAGAT
GGACATATATTATCTTACCCAATTCCTTACTTCGAGGCTGATGAAAACGG
GACATTGGTAAGGTCAACTTATATAAACTGGTTGTGGTACAGGAATCTGC
CGAACCAGGATCAGTTAGAAAACTTCCTCGTTGACTCAGCAGGAAAAAAG
AGACTGAAATCTGTACCAAGAGGGTGCGTGCCCTCTCACCGTGTAGAAGC
ACTGAAGAACGACGCGTCCACTTTACAATACGATTTTCGACAGTTAGTTA
ACCTTACCCAAGACCCATTCATTCAGCCATTATTCGATTATGGTACAGAA
AAGATGGTTCTCGGTAGAATATGTTTGCTTGGAGACGCCGCTTTTTCTGT
CCGGCCTCACGTAGCAGTCGGAACAGCGAAAGCATGGGATGATGCGGTTC
ACTTGGCATATTTTCTGAAGCAGCCTGGACGGGACCTTCATTCGGCTCTG
CACGCCTGGGAAGAAAAGCAACTCGCTTTAGGAAAACAGTTGCTGAAGAG
AAGCGTGGAGCTTGGGAATATGCTTCAAACTGGAACTTGGAACTATGATC
GACCATCCCCATTCGGTCTGTACGAGGCAGGAGACTCTTATAATTGGAGT
GATGCCGCTCACAGTCTTCATTCTACGTCACTCATATGA
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