Gcaud3062.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3062.t1
Unique Name	Gcaud3062.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1950_length_7502_cov_4.683174	contig	NODE_1950_length_7502_cov_4.683174:1492..2418 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3062	Gcaud3062	Gracilaria caudata M_176_S67 male	gene	NODE_1950_length_7502_cov_4.683174 1492..2418 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3062.t1.start1	Gcaud3062.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1950_length_7502_cov_4.683174 1492..1494 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3062.t1.CDS1	Gcaud3062.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1950_length_7502_cov_4.683174 1492..2418 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3062.t1.exon1	Gcaud3062.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1950_length_7502_cov_4.683174 1492..2418 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3062.t1.stop1	Gcaud3062.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1950_length_7502_cov_4.683174 2416..2418 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3062.t1	Gcaud3062.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1950_length_7502_cov_4.683174 1492..2418 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1950_length_7502_cov_4.683174:1492..2418+
coding sequence from alignment at NODE_1950_length_7502_cov_4.683174:1492..2418+

mRNA sequence

>Gcaud3062.t1 ID=Gcaud3062.t1|Name=Gcaud3062.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=309bp
MSFGLGSIVFTDIFATLKDSVHIEAAVFLTSAILSLPGLATCMLVEWPPK
AVSSPSTTSETDSERSITRDAADGRQISWRILPRLPLFWLYVAAISAAQA
GYMFIPYFFDLGHSFNASKHTVVRSFQAINLLGTMFRPLVTSITDAIRFP
SGPFSLGTKNVTVCLLVTQLLMFIALIPISKMAWFGAFVVCSGISVVLFA
VGAGLSALLARELFGRSNSALIFGVGGSIAMGLGEFVAVFAVERMTSRTV
SGPSAYNAYYFFAVAWTILGFLASLFLHKSPEVFAKDDANVFDEYGSVKH
SRDNVMNA*

spliced messenger RNA

>Gcaud3062.t1 ID=Gcaud3062.t1|Name=Gcaud3062.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_1950_length_7502_cov_4.683174:1492..2418+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTTGGGCTTGGTTCCATTGTGTTTACGGATATATTTGCAACACT
CAAGGACTCCGTTCACATCGAAGCTGCCGTCTTCCTCACAAGTGCTATCC
TTTCACTGCCTGGTCTAGCAACCTGCATGCTTGTGGAATGGCCGCCAAAG
GCAGTTTCTTCACCGTCTACAACATCAGAAACCGATTCGGAACGCAGTAT
TACTCGCGACGCGGCAGATGGACGGCAGATTTCGTGGAGAATTCTCCCTA
GACTTCCTCTGTTCTGGTTGTATGTTGCGGCTATTTCAGCTGCACAGGCT
GGATACATGTTCATCCCGTACTTTTTTGACTTGGGACATTCGTTCAATGC
CAGTAAGCATACAGTTGTACGCAGTTTCCAGGCAATAAATCTGCTTGGTA
CTATGTTCCGCCCTCTTGTTACTAGCATCACTGATGCTATTAGATTTCCG
TCCGGCCCTTTCTCTCTTGGAACCAAGAATGTCACCGTGTGCTTGCTGGT
GACACAGTTGCTCATGTTCATCGCCTTGATTCCGATTTCGAAGATGGCTT
GGTTCGGTGCTTTTGTTGTCTGTAGTGGGATATCTGTTGTTTTGTTTGCT
GTCGGTGCCGGTCTATCTGCTCTACTGGCCCGTGAACTCTTTGGAAGGAG
TAACAGTGCTTTGATATTCGGTGTGGGAGGAAGCATTGCAATGGGATTAG
GAGAGTTCGTTGCGGTGTTTGCTGTGGAGCGAATGACTTCTCGGACTGTC
TCTGGTCCTTCGGCATATAACGCCTATTACTTCTTTGCGGTGGCATGGAC
GATTCTTGGATTTCTCGCCTCTCTCTTTCTTCACAAGAGCCCTGAGGTAT
TTGCTAAGGACGATGCGAATGTTTTTGATGAGTACGGTTCTGTGAAGCAT
TCGCGTGACAACGTGATGAATGCATGA

protein sequence of Gcaud3062.t1

>Gcaud3062.t1 ID=Gcaud3062.t1|Name=Gcaud3062.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=309bp
MSFGLGSIVFTDIFATLKDSVHIEAAVFLTSAILSLPGLATCMLVEWPPK
AVSSPSTTSETDSERSITRDAADGRQISWRILPRLPLFWLYVAAISAAQA
GYMFIPYFFDLGHSFNASKHTVVRSFQAINLLGTMFRPLVTSITDAIRFP
SGPFSLGTKNVTVCLLVTQLLMFIALIPISKMAWFGAFVVCSGISVVLFA
VGAGLSALLARELFGRSNSALIFGVGGSIAMGLGEFVAVFAVERMTSRTV
SGPSAYNAYYFFAVAWTILGFLASLFLHKSPEVFAKDDANVFDEYGSVKH
SRDNVMNA*

mRNA from alignment at NODE_1950_length_7502_cov_4.683174:1492..2418+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3062.t1 ID=Gcaud3062.t1|Name=Gcaud3062.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_1950_length_7502_cov_4.683174:1492..2418+ (Gracilaria caudata M_176_S67 male)
ATGTCTTTTGGGCTTGGTTCCATTGTGTTTACGGATATATTTGCAACACT
CAAGGACTCCGTTCACATCGAAGCTGCCGTCTTCCTCACAAGTGCTATCC
TTTCACTGCCTGGTCTAGCAACCTGCATGCTTGTGGAATGGCCGCCAAAG
GCAGTTTCTTCACCGTCTACAACATCAGAAACCGATTCGGAACGCAGTAT
TACTCGCGACGCGGCAGATGGACGGCAGATTTCGTGGAGAATTCTCCCTA
GACTTCCTCTGTTCTGGTTGTATGTTGCGGCTATTTCAGCTGCACAGGCT
GGATACATGTTCATCCCGTACTTTTTTGACTTGGGACATTCGTTCAATGC
CAGTAAGCATACAGTTGTACGCAGTTTCCAGGCAATAAATCTGCTTGGTA
CTATGTTCCGCCCTCTTGTTACTAGCATCACTGATGCTATTAGATTTCCG
TCCGGCCCTTTCTCTCTTGGAACCAAGAATGTCACCGTGTGCTTGCTGGT
GACACAGTTGCTCATGTTCATCGCCTTGATTCCGATTTCGAAGATGGCTT
GGTTCGGTGCTTTTGTTGTCTGTAGTGGGATATCTGTTGTTTTGTTTGCT
GTCGGTGCCGGTCTATCTGCTCTACTGGCCCGTGAACTCTTTGGAAGGAG
TAACAGTGCTTTGATATTCGGTGTGGGAGGAAGCATTGCAATGGGATTAG
GAGAGTTCGTTGCGGTGTTTGCTGTGGAGCGAATGACTTCTCGGACTGTC
TCTGGTCCTTCGGCATATAACGCCTATTACTTCTTTGCGGTGGCATGGAC
GATTCTTGGATTTCTCGCCTCTCTCTTTCTTCACAAGAGCCCTGAGGTAT
TTGCTAAGGACGATGCGAATGTTTTTGATGAGTACGGTTCTGTGAAGCAT
TCGCGTGACAACGTGATGAATGCATGA

Coding sequence (CDS) from alignment at NODE_1950_length_7502_cov_4.683174:1492..2418+

>Gcaud3062.t1 ID=Gcaud3062.t1|Name=Gcaud3062.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=927bp|location=Sequence derived from alignment at NODE_1950_length_7502_cov_4.683174:1492..2418+ (Gracilaria caudata M_176_S67 male)
ATGTCTTTTGGGCTTGGTTCCATTGTGTTTACGGATATATTTGCAACACT
CAAGGACTCCGTTCACATCGAAGCTGCCGTCTTCCTCACAAGTGCTATCC
TTTCACTGCCTGGTCTAGCAACCTGCATGCTTGTGGAATGGCCGCCAAAG
GCAGTTTCTTCACCGTCTACAACATCAGAAACCGATTCGGAACGCAGTAT
TACTCGCGACGCGGCAGATGGACGGCAGATTTCGTGGAGAATTCTCCCTA
GACTTCCTCTGTTCTGGTTGTATGTTGCGGCTATTTCAGCTGCACAGGCT
GGATACATGTTCATCCCGTACTTTTTTGACTTGGGACATTCGTTCAATGC
CAGTAAGCATACAGTTGTACGCAGTTTCCAGGCAATAAATCTGCTTGGTA
CTATGTTCCGCCCTCTTGTTACTAGCATCACTGATGCTATTAGATTTCCG
TCCGGCCCTTTCTCTCTTGGAACCAAGAATGTCACCGTGTGCTTGCTGGT
GACACAGTTGCTCATGTTCATCGCCTTGATTCCGATTTCGAAGATGGCTT
GGTTCGGTGCTTTTGTTGTCTGTAGTGGGATATCTGTTGTTTTGTTTGCT
GTCGGTGCCGGTCTATCTGCTCTACTGGCCCGTGAACTCTTTGGAAGGAG
TAACAGTGCTTTGATATTCGGTGTGGGAGGAAGCATTGCAATGGGATTAG
GAGAGTTCGTTGCGGTGTTTGCTGTGGAGCGAATGACTTCTCGGACTGTC
TCTGGTCCTTCGGCATATAACGCCTATTACTTCTTTGCGGTGGCATGGAC
GATTCTTGGATTTCTCGCCTCTCTCTTTCTTCACAAGAGCCCTGAGGTAT
TTGCTAAGGACGATGCGAATGTTTTTGATGAGTACGGTTCTGTGAAGCAT
TCGCGTGACAACGTGATGAATGCATGA