Gcaud3061.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3061.t1
Unique NameGcaud3061.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length75
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1950_length_7502_cov_4.683174contigNODE_1950_length_7502_cov_4.683174:932..1426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3061Gcaud3061Gracilaria caudata M_176_S67 malegeneNODE_1950_length_7502_cov_4.683174 932..1426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3061.t1Gcaud3061.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1950_length_7502_cov_4.683174 932..1426 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3061.t1.start1Gcaud3061.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1950_length_7502_cov_4.683174 932..934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3061.t1.CDS1Gcaud3061.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1950_length_7502_cov_4.683174 932..1124 +
Gcaud3061.t1.CDS2Gcaud3061.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1950_length_7502_cov_4.683174 1309..1331 +
Gcaud3061.t1.CDS3Gcaud3061.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1950_length_7502_cov_4.683174 1418..1426 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3061.t1.exon1Gcaud3061.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1950_length_7502_cov_4.683174 932..1124 +
Gcaud3061.t1.exon2Gcaud3061.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1950_length_7502_cov_4.683174 1309..1331 +
Gcaud3061.t1.exon3Gcaud3061.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1950_length_7502_cov_4.683174 1418..1426 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3061.t1.intron1Gcaud3061.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1950_length_7502_cov_4.683174 1125..1308 +
Gcaud3061.t1.intron2Gcaud3061.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1950_length_7502_cov_4.683174 1332..1417 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3061.t1.stop1Gcaud3061.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1950_length_7502_cov_4.683174 1424..1426 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3061.t1 ID=Gcaud3061.t1|Name=Gcaud3061.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=75bp
MTAPDVAHQNVTSLKVVTNVAISMLLMFLTGAIYDLGVYNLAVDKALGSS
NAVWSSSMAYMSVTVLETDLAFIT*
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spliced messenger RNA

>Gcaud3061.t1 ID=Gcaud3061.t1|Name=Gcaud3061.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp|location=Sequence derived from alignment at NODE_1950_length_7502_cov_4.683174:932..1426+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCGCCTGATGTTGCGCACCAAAACGTCACTTCTCTCAAAGTCGT
TACGAATGTTGCCATATCCATGTTGCTCATGTTTCTCACGGGCGCCATCT
ATGACCTGGGTGTGTACAACCTTGCCGTGGACAAGGCGCTCGGCTCTTCG
AATGCTGTGTGGTCTTCTTCAATGGCATACATGAGTGTCACAGTCTTGGA
AACGGATTTGGCGTTTATTACCTAG
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protein sequence of Gcaud3061.t1

>Gcaud3061.t1 ID=Gcaud3061.t1|Name=Gcaud3061.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=75bp
MTAPDVAHQNVTSLKVVTNVAISMLLMFLTGAIYDLGVYNLAVDKALGSS
NAVWSSSMAYMSVTVLETDLAFIT*
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mRNA from alignment at NODE_1950_length_7502_cov_4.683174:932..1426+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3061.t1 ID=Gcaud3061.t1|Name=Gcaud3061.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=495bp|location=Sequence derived from alignment at NODE_1950_length_7502_cov_4.683174:932..1426+ (Gracilaria caudata M_176_S67 male)
ATGACTGCGCCTGATGTTGCGCACCAAAACGTCACTTCTCTCAAAGTCGT
TACGAATGTTGCCATATCCATGTTGCTCATGTTTCTCACGGGCGCCATCT
ATGACCTGGGTGTGTACAACCTTGCCGTGGACAAGGCGCTCGGCTCTTCG
AATGCTGTGTGGTCTTCTTCAATGGCATACATGAGTGTCACAGGTACAGT
TACCATGCTACTCACTGGCGTTACGCTCAGTTCTCATCACAGCGTCTCTT
CTTCCTCACAGACATATACCCTTCGTCTGCTTTGTCTTTTTGCTGCCGTT
TCGTATTTGTTGCTTTGTGTCGGTGCCTATGCGATTAGAACGCGCTCCAC
ATTTCTAATTCGCCTCGCGTTTGCCAGTCTTGGAAACGGATTTGGCGTTT
GTAAGTTGTCACCATCTTAACTCTCTTCTCGCTTTCGATTTGTTTCTCAC
CTGCATTTATGTCATCTTTATACTCGTGCATTATAGATTACCTAG
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Coding sequence (CDS) from alignment at NODE_1950_length_7502_cov_4.683174:932..1426+

>Gcaud3061.t1 ID=Gcaud3061.t1|Name=Gcaud3061.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=225bp|location=Sequence derived from alignment at NODE_1950_length_7502_cov_4.683174:932..1426+ (Gracilaria caudata M_176_S67 male)
ATGACTGCGCCTGATGTTGCGCACCAAAACGTCACTTCTCTCAAAGTCGT
TACGAATGTTGCCATATCCATGTTGCTCATGTTTCTCACGGGCGCCATCT
ATGACCTGGGTGTGTACAACCTTGCCGTGGACAAGGCGCTCGGCTCTTCG
AATGCTGTGTGGTCTTCTTCAATGGCATACATGAGTGTCACAGTCTTGGA
AACGGATTTGGCGTTTATTACCTAG
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