Gcaud3056.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3056.t1
Unique Name	Gcaud3056.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	354

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_325_length_30116_cov_4.264147	contig	NODE_325_length_30116_cov_4.264147:18351..19412 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3827.XP_004488950.1
PFAMs	ADK,DUF1995
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00002
KEGG ko	ko:K00939
KEGG Reaction	R00127,R01547,R11319
KEGG Pathway	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG Module	M00049
GOs	GO:0003674,GO:0003824,GO:0004017,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046940,GO:0050145,GO:0055035,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576
Evalue	4.32e-23
EggNOG OGs	COG0563@1\|root,KOG3078@2759\|Eukaryota,37HGK@33090\|Viridiplantae,3GDCM@35493\|Streptophyta,4JIXU@91835\|fabids
EC	2.7.4.3
Description	Belongs to the adenylate kinase family
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3056	Gcaud3056	Gracilaria caudata M_176_S67 male	gene	NODE_325_length_30116_cov_4.264147 18351..19412 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3056.t1.start1	Gcaud3056.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_325_length_30116_cov_4.264147 18351..18353 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3056.t1.CDS1	Gcaud3056.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_325_length_30116_cov_4.264147 18351..19412 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3056.t1.exon1	Gcaud3056.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_325_length_30116_cov_4.264147 18351..19412 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3056.t1.stop1	Gcaud3056.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_325_length_30116_cov_4.264147 19410..19412 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3056.t1	Gcaud3056.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_325_length_30116_cov_4.264147 18351..19412 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_325_length_30116_cov_4.264147:18351..19412+
coding sequence from alignment at NODE_325_length_30116_cov_4.264147:18351..19412+

mRNA sequence

>Gcaud3056.t1 ID=Gcaud3056.t1|Name=Gcaud3056.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=354bp
LDSKTPSTSSTSEQDDGPRASSIIPNTPCFTKRIMATPMDRPTRQQYLDF
AGAAFESYLQSYFNNPTDVSRLSQLTLLLPELNPTLDVYDRRFLLQFTWA
LLRVTSSLGLRSCVLVQGARRFGAMPLSVAGLRRNFDADLELSRSGWPEK
AVRSGELEDLEAIEDDVDIVLVLSPTNAVSIPTVESVSNLVHHLKGKPIA
LINPRLEEVPSHSGVMQVQGRADRLRLLNSFEDVFYMRLLFDAGKNFPLR
GILYRAHPNQWQAWCSPSYDEYVLSLEGEQKPEFGAVSDAFRRTLYQIQK
ERVAQSTNEGAIEQLLLSPPAIIVFVAVTAFAIYKGGGESLPALWNSLRS
SLP*

spliced messenger RNA

>Gcaud3056.t1 ID=Gcaud3056.t1|Name=Gcaud3056.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1062bp|location=Sequence derived from alignment at NODE_325_length_30116_cov_4.264147:18351..19412+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGACTCCAAAACGCCGTCTACATCGTCCACTTCTGAACAAGATGATGG
ACCGCGTGCGTCCTCAATAATTCCAAACACTCCGTGCTTTACAAAGCGCA
TCATGGCTACGCCGATGGACCGTCCTACACGCCAGCAATACCTAGATTTC
GCGGGGGCCGCATTTGAGTCATACCTACAATCGTACTTCAACAATCCGAC
TGACGTATCTCGACTATCACAGTTGACCCTTTTGCTACCAGAACTTAATC
CCACGCTTGACGTATATGACCGACGTTTTCTACTGCAGTTCACATGGGCA
TTGCTCAGAGTCACTTCTTCGCTCGGGCTTCGCTCTTGTGTTCTTGTTCA
AGGAGCACGCCGCTTTGGAGCAATGCCACTGTCTGTCGCAGGCCTGCGCC
GAAACTTTGACGCCGACTTGGAGCTTTCTCGTTCCGGCTGGCCAGAGAAA
GCCGTTAGATCTGGAGAGCTAGAAGACTTGGAAGCCATTGAGGATGATGT
AGACATAGTGCTTGTTCTCTCTCCCACCAACGCTGTATCTATTCCGACTG
TCGAGAGCGTCTCAAACCTCGTTCACCATCTCAAGGGAAAACCAATTGCT
CTTATCAATCCTCGACTTGAAGAAGTACCGAGTCATAGCGGTGTCATGCA
GGTGCAAGGTCGAGCGGATAGATTGCGCCTTTTGAATAGCTTCGAGGACG
TCTTCTACATGCGTCTGCTCTTCGATGCTGGTAAGAACTTTCCTTTGCGT
GGTATCTTGTACAGGGCTCATCCTAACCAATGGCAGGCATGGTGCAGTCC
ATCGTATGACGAATACGTTCTCTCATTGGAAGGTGAACAAAAACCGGAGT
TCGGAGCAGTCAGCGATGCGTTTCGGAGAACCCTGTATCAAATTCAGAAA
GAAAGAGTTGCACAGAGTACCAATGAGGGTGCCATAGAGCAGCTTCTTCT
ATCACCTCCAGCGATAATCGTGTTCGTCGCCGTTACTGCATTTGCAATTT
ACAAAGGCGGCGGGGAAAGTTTGCCAGCATTGTGGAACTCGTTAAGAAGT
TCGCTCCCATGA

protein sequence of Gcaud3056.t1

>Gcaud3056.t1 ID=Gcaud3056.t1|Name=Gcaud3056.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=354bp
LDSKTPSTSSTSEQDDGPRASSIIPNTPCFTKRIMATPMDRPTRQQYLDF
AGAAFESYLQSYFNNPTDVSRLSQLTLLLPELNPTLDVYDRRFLLQFTWA
LLRVTSSLGLRSCVLVQGARRFGAMPLSVAGLRRNFDADLELSRSGWPEK
AVRSGELEDLEAIEDDVDIVLVLSPTNAVSIPTVESVSNLVHHLKGKPIA
LINPRLEEVPSHSGVMQVQGRADRLRLLNSFEDVFYMRLLFDAGKNFPLR
GILYRAHPNQWQAWCSPSYDEYVLSLEGEQKPEFGAVSDAFRRTLYQIQK
ERVAQSTNEGAIEQLLLSPPAIIVFVAVTAFAIYKGGGESLPALWNSLRS
SLP*

mRNA from alignment at NODE_325_length_30116_cov_4.264147:18351..19412+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3056.t1 ID=Gcaud3056.t1|Name=Gcaud3056.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1062bp|location=Sequence derived from alignment at NODE_325_length_30116_cov_4.264147:18351..19412+ (Gracilaria caudata M_176_S67 male)
TTGGACTCCAAAACGCCGTCTACATCGTCCACTTCTGAACAAGATGATGG
ACCGCGTGCGTCCTCAATAATTCCAAACACTCCGTGCTTTACAAAGCGCA
TCATGGCTACGCCGATGGACCGTCCTACACGCCAGCAATACCTAGATTTC
GCGGGGGCCGCATTTGAGTCATACCTACAATCGTACTTCAACAATCCGAC
TGACGTATCTCGACTATCACAGTTGACCCTTTTGCTACCAGAACTTAATC
CCACGCTTGACGTATATGACCGACGTTTTCTACTGCAGTTCACATGGGCA
TTGCTCAGAGTCACTTCTTCGCTCGGGCTTCGCTCTTGTGTTCTTGTTCA
AGGAGCACGCCGCTTTGGAGCAATGCCACTGTCTGTCGCAGGCCTGCGCC
GAAACTTTGACGCCGACTTGGAGCTTTCTCGTTCCGGCTGGCCAGAGAAA
GCCGTTAGATCTGGAGAGCTAGAAGACTTGGAAGCCATTGAGGATGATGT
AGACATAGTGCTTGTTCTCTCTCCCACCAACGCTGTATCTATTCCGACTG
TCGAGAGCGTCTCAAACCTCGTTCACCATCTCAAGGGAAAACCAATTGCT
CTTATCAATCCTCGACTTGAAGAAGTACCGAGTCATAGCGGTGTCATGCA
GGTGCAAGGTCGAGCGGATAGATTGCGCCTTTTGAATAGCTTCGAGGACG
TCTTCTACATGCGTCTGCTCTTCGATGCTGGTAAGAACTTTCCTTTGCGT
GGTATCTTGTACAGGGCTCATCCTAACCAATGGCAGGCATGGTGCAGTCC
ATCGTATGACGAATACGTTCTCTCATTGGAAGGTGAACAAAAACCGGAGT
TCGGAGCAGTCAGCGATGCGTTTCGGAGAACCCTGTATCAAATTCAGAAA
GAAAGAGTTGCACAGAGTACCAATGAGGGTGCCATAGAGCAGCTTCTTCT
ATCACCTCCAGCGATAATCGTGTTCGTCGCCGTTACTGCATTTGCAATTT
ACAAAGGCGGCGGGGAAAGTTTGCCAGCATTGTGGAACTCGTTAAGAAGT
TCGCTCCCATGA

Coding sequence (CDS) from alignment at NODE_325_length_30116_cov_4.264147:18351..19412+

>Gcaud3056.t1 ID=Gcaud3056.t1|Name=Gcaud3056.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1062bp|location=Sequence derived from alignment at NODE_325_length_30116_cov_4.264147:18351..19412+ (Gracilaria caudata M_176_S67 male)
TTGGACTCCAAAACGCCGTCTACATCGTCCACTTCTGAACAAGATGATGG
ACCGCGTGCGTCCTCAATAATTCCAAACACTCCGTGCTTTACAAAGCGCA
TCATGGCTACGCCGATGGACCGTCCTACACGCCAGCAATACCTAGATTTC
GCGGGGGCCGCATTTGAGTCATACCTACAATCGTACTTCAACAATCCGAC
TGACGTATCTCGACTATCACAGTTGACCCTTTTGCTACCAGAACTTAATC
CCACGCTTGACGTATATGACCGACGTTTTCTACTGCAGTTCACATGGGCA
TTGCTCAGAGTCACTTCTTCGCTCGGGCTTCGCTCTTGTGTTCTTGTTCA
AGGAGCACGCCGCTTTGGAGCAATGCCACTGTCTGTCGCAGGCCTGCGCC
GAAACTTTGACGCCGACTTGGAGCTTTCTCGTTCCGGCTGGCCAGAGAAA
GCCGTTAGATCTGGAGAGCTAGAAGACTTGGAAGCCATTGAGGATGATGT
AGACATAGTGCTTGTTCTCTCTCCCACCAACGCTGTATCTATTCCGACTG
TCGAGAGCGTCTCAAACCTCGTTCACCATCTCAAGGGAAAACCAATTGCT
CTTATCAATCCTCGACTTGAAGAAGTACCGAGTCATAGCGGTGTCATGCA
GGTGCAAGGTCGAGCGGATAGATTGCGCCTTTTGAATAGCTTCGAGGACG
TCTTCTACATGCGTCTGCTCTTCGATGCTGGTAAGAACTTTCCTTTGCGT
GGTATCTTGTACAGGGCTCATCCTAACCAATGGCAGGCATGGTGCAGTCC
ATCGTATGACGAATACGTTCTCTCATTGGAAGGTGAACAAAAACCGGAGT
TCGGAGCAGTCAGCGATGCGTTTCGGAGAACCCTGTATCAAATTCAGAAA
GAAAGAGTTGCACAGAGTACCAATGAGGGTGCCATAGAGCAGCTTCTTCT
ATCACCTCCAGCGATAATCGTGTTCGTCGCCGTTACTGCATTTGCAATTT
ACAAAGGCGGCGGGGAAAGTTTGCCAGCATTGTGGAACTCGTTAAGAAGT
TCGCTCCCATGA