Gcaud3052.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3052.t1
Unique Name	Gcaud3052.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	394

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_325_length_30116_cov_4.264147	contig	NODE_325_length_30116_cov_4.264147:11667..12848 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3052	Gcaud3052	Gracilaria caudata M_176_S67 male	gene	NODE_325_length_30116_cov_4.264147 11667..12848 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3052.t1.stop1	Gcaud3052.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_325_length_30116_cov_4.264147 11667..11669 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3052.t1.CDS1	Gcaud3052.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_325_length_30116_cov_4.264147 11667..12848 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3052.t1.exon1	Gcaud3052.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_325_length_30116_cov_4.264147 11667..12848 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3052.t1.start1	Gcaud3052.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_325_length_30116_cov_4.264147 12846..12848 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3052.t1	Gcaud3052.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_325_length_30116_cov_4.264147 11667..12848 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_325_length_30116_cov_4.264147:11667..12848-
coding sequence from alignment at NODE_325_length_30116_cov_4.264147:11667..12848-

mRNA sequence

>Gcaud3052.t1 ID=Gcaud3052.t1|Name=Gcaud3052.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=394bp
MKCPLAASAALFAALVLLVTAATEQTVVTKSSETIAIKNKLDTAQGKVSD
LISRLDSVSDDATRAKNEIHSTLVEVWRIADMLGQDRCGDVVEKFRAEKQ
KANIKINQLSEEVSAHLRDIEALKLTVVKLTDSSGALQTELNAERSRREA
LESEARELRDKLHWANAVANETQKYELVAERLHALFVVVNERTQLLKRLE
GMISEAHVGFSDWRAEIESLTDIIRDAERDFAGGYQNAAVQALKRQSEEL
QRKLRDAVKSKQSLSMEKNSLQKSFDSLQSKLKTGASALSFAKSGVDVTY
GARSGGGGEGGTWVGTLTLCILSVCTGAVLVFLLSNWQQSKEVETPRGDK
YGFTPSSSTTTPGFVRGSVSPLQYVNSANSKTPASRGSTPRRY*

spliced messenger RNA

>Gcaud3052.t1 ID=Gcaud3052.t1|Name=Gcaud3052.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at NODE_325_length_30116_cov_4.264147:11667..12848- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTGCCCGCTCGCCGCGTCCGCGGCGCTTTTCGCCGCGCTTGTGCT
GCTTGTCACAGCCGCCACCGAGCAAACCGTCGTCACCAAGTCCAGCGAGA
CCATCGCCATCAAAAACAAGCTCGACACCGCGCAGGGCAAGGTCAGCGAT
CTCATCTCTCGTCTCGACTCCGTGTCCGACGACGCCACGCGCGCCAAGAA
CGAGATCCACTCCACGCTCGTGGAGGTGTGGCGCATCGCCGACATGCTCG
GTCAGGATCGTTGCGGCGACGTTGTGGAGAAATTCCGCGCCGAGAAACAG
AAGGCAAACATCAAAATCAACCAACTCAGCGAGGAGGTGTCCGCGCACTT
GCGCGACATTGAGGCGCTCAAGCTCACCGTTGTCAAACTCACAGACAGCT
CTGGCGCGTTGCAGACGGAGCTCAACGCGGAGCGCTCGCGCAGAGAGGCG
TTGGAAAGCGAGGCGCGAGAGTTGCGCGACAAGTTGCACTGGGCGAATGC
GGTGGCGAACGAGACGCAGAAGTACGAGCTCGTGGCAGAGCGGCTGCACG
CTTTGTTTGTGGTGGTCAATGAACGCACGCAGCTGCTCAAGCGTCTGGAG
GGTATGATCAGCGAGGCGCACGTGGGCTTTTCGGACTGGCGCGCCGAAAT
CGAGTCGCTCACCGACATCATCCGCGACGCGGAACGCGACTTTGCCGGCG
GCTATCAAAACGCCGCCGTGCAGGCGCTCAAGCGACAGTCGGAGGAGCTG
CAACGCAAACTGCGCGACGCGGTGAAGAGCAAGCAGTCGCTGAGCATGGA
GAAGAACTCGCTGCAAAAGTCGTTCGATTCGCTGCAGAGCAAGCTCAAGA
CGGGCGCGTCGGCGCTGTCGTTTGCAAAGAGCGGCGTGGATGTGACGTAT
GGAGCGCGCAGCGGCGGCGGCGGCGAGGGCGGTACGTGGGTGGGCACGCT
CACGCTTTGCATTTTGTCGGTGTGTACGGGCGCGGTGTTGGTGTTCTTGC
TGTCCAACTGGCAGCAGAGCAAGGAGGTTGAGACGCCGCGCGGCGACAAG
TACGGGTTCACGCCGTCGTCGTCCACCACCACGCCGGGGTTTGTGCGCGG
CAGCGTGTCGCCGCTGCAGTATGTGAACAGCGCCAACTCGAAGACACCCG
CTTCGAGGGGGAGCACGCCGAGACGATACTGA

protein sequence of Gcaud3052.t1

>Gcaud3052.t1 ID=Gcaud3052.t1|Name=Gcaud3052.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=394bp
MKCPLAASAALFAALVLLVTAATEQTVVTKSSETIAIKNKLDTAQGKVSD
LISRLDSVSDDATRAKNEIHSTLVEVWRIADMLGQDRCGDVVEKFRAEKQ
KANIKINQLSEEVSAHLRDIEALKLTVVKLTDSSGALQTELNAERSRREA
LESEARELRDKLHWANAVANETQKYELVAERLHALFVVVNERTQLLKRLE
GMISEAHVGFSDWRAEIESLTDIIRDAERDFAGGYQNAAVQALKRQSEEL
QRKLRDAVKSKQSLSMEKNSLQKSFDSLQSKLKTGASALSFAKSGVDVTY
GARSGGGGEGGTWVGTLTLCILSVCTGAVLVFLLSNWQQSKEVETPRGDK
YGFTPSSSTTTPGFVRGSVSPLQYVNSANSKTPASRGSTPRRY*

mRNA from alignment at NODE_325_length_30116_cov_4.264147:11667..12848-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3052.t1 ID=Gcaud3052.t1|Name=Gcaud3052.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at NODE_325_length_30116_cov_4.264147:11667..12848- (Gracilaria caudata M_176_S67 male)
ATGAAGTGCCCGCTCGCCGCGTCCGCGGCGCTTTTCGCCGCGCTTGTGCT
GCTTGTCACAGCCGCCACCGAGCAAACCGTCGTCACCAAGTCCAGCGAGA
CCATCGCCATCAAAAACAAGCTCGACACCGCGCAGGGCAAGGTCAGCGAT
CTCATCTCTCGTCTCGACTCCGTGTCCGACGACGCCACGCGCGCCAAGAA
CGAGATCCACTCCACGCTCGTGGAGGTGTGGCGCATCGCCGACATGCTCG
GTCAGGATCGTTGCGGCGACGTTGTGGAGAAATTCCGCGCCGAGAAACAG
AAGGCAAACATCAAAATCAACCAACTCAGCGAGGAGGTGTCCGCGCACTT
GCGCGACATTGAGGCGCTCAAGCTCACCGTTGTCAAACTCACAGACAGCT
CTGGCGCGTTGCAGACGGAGCTCAACGCGGAGCGCTCGCGCAGAGAGGCG
TTGGAAAGCGAGGCGCGAGAGTTGCGCGACAAGTTGCACTGGGCGAATGC
GGTGGCGAACGAGACGCAGAAGTACGAGCTCGTGGCAGAGCGGCTGCACG
CTTTGTTTGTGGTGGTCAATGAACGCACGCAGCTGCTCAAGCGTCTGGAG
GGTATGATCAGCGAGGCGCACGTGGGCTTTTCGGACTGGCGCGCCGAAAT
CGAGTCGCTCACCGACATCATCCGCGACGCGGAACGCGACTTTGCCGGCG
GCTATCAAAACGCCGCCGTGCAGGCGCTCAAGCGACAGTCGGAGGAGCTG
CAACGCAAACTGCGCGACGCGGTGAAGAGCAAGCAGTCGCTGAGCATGGA
GAAGAACTCGCTGCAAAAGTCGTTCGATTCGCTGCAGAGCAAGCTCAAGA
CGGGCGCGTCGGCGCTGTCGTTTGCAAAGAGCGGCGTGGATGTGACGTAT
GGAGCGCGCAGCGGCGGCGGCGGCGAGGGCGGTACGTGGGTGGGCACGCT
CACGCTTTGCATTTTGTCGGTGTGTACGGGCGCGGTGTTGGTGTTCTTGC
TGTCCAACTGGCAGCAGAGCAAGGAGGTTGAGACGCCGCGCGGCGACAAG
TACGGGTTCACGCCGTCGTCGTCCACCACCACGCCGGGGTTTGTGCGCGG
CAGCGTGTCGCCGCTGCAGTATGTGAACAGCGCCAACTCGAAGACACCCG
CTTCGAGGGGGAGCACGCCGAGACGATACTGA

Coding sequence (CDS) from alignment at NODE_325_length_30116_cov_4.264147:11667..12848-

>Gcaud3052.t1 ID=Gcaud3052.t1|Name=Gcaud3052.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1182bp|location=Sequence derived from alignment at NODE_325_length_30116_cov_4.264147:11667..12848- (Gracilaria caudata M_176_S67 male)
ATGAAGTGCCCGCTCGCCGCGTCCGCGGCGCTTTTCGCCGCGCTTGTGCT
GCTTGTCACAGCCGCCACCGAGCAAACCGTCGTCACCAAGTCCAGCGAGA
CCATCGCCATCAAAAACAAGCTCGACACCGCGCAGGGCAAGGTCAGCGAT
CTCATCTCTCGTCTCGACTCCGTGTCCGACGACGCCACGCGCGCCAAGAA
CGAGATCCACTCCACGCTCGTGGAGGTGTGGCGCATCGCCGACATGCTCG
GTCAGGATCGTTGCGGCGACGTTGTGGAGAAATTCCGCGCCGAGAAACAG
AAGGCAAACATCAAAATCAACCAACTCAGCGAGGAGGTGTCCGCGCACTT
GCGCGACATTGAGGCGCTCAAGCTCACCGTTGTCAAACTCACAGACAGCT
CTGGCGCGTTGCAGACGGAGCTCAACGCGGAGCGCTCGCGCAGAGAGGCG
TTGGAAAGCGAGGCGCGAGAGTTGCGCGACAAGTTGCACTGGGCGAATGC
GGTGGCGAACGAGACGCAGAAGTACGAGCTCGTGGCAGAGCGGCTGCACG
CTTTGTTTGTGGTGGTCAATGAACGCACGCAGCTGCTCAAGCGTCTGGAG
GGTATGATCAGCGAGGCGCACGTGGGCTTTTCGGACTGGCGCGCCGAAAT
CGAGTCGCTCACCGACATCATCCGCGACGCGGAACGCGACTTTGCCGGCG
GCTATCAAAACGCCGCCGTGCAGGCGCTCAAGCGACAGTCGGAGGAGCTG
CAACGCAAACTGCGCGACGCGGTGAAGAGCAAGCAGTCGCTGAGCATGGA
GAAGAACTCGCTGCAAAAGTCGTTCGATTCGCTGCAGAGCAAGCTCAAGA
CGGGCGCGTCGGCGCTGTCGTTTGCAAAGAGCGGCGTGGATGTGACGTAT
GGAGCGCGCAGCGGCGGCGGCGGCGAGGGCGGTACGTGGGTGGGCACGCT
CACGCTTTGCATTTTGTCGGTGTGTACGGGCGCGGTGTTGGTGTTCTTGC
TGTCCAACTGGCAGCAGAGCAAGGAGGTTGAGACGCCGCGCGGCGACAAG
TACGGGTTCACGCCGTCGTCGTCCACCACCACGCCGGGGTTTGTGCGCGG
CAGCGTGTCGCCGCTGCAGTATGTGAACAGCGCCAACTCGAAGACACCCG
CTTCGAGGGGGAGCACGCCGAGACGATACTGA