Gcaud3050.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3050.t1
Unique NameGcaud3050.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length526
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_325_length_30116_cov_4.264147contigNODE_325_length_30116_cov_4.264147:8252..10091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3050Gcaud3050Gracilaria caudata M_176_S67 malegeneNODE_325_length_30116_cov_4.264147 8252..10091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3050.t1Gcaud3050.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_325_length_30116_cov_4.264147 8252..10091 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3050.t1.stop1Gcaud3050.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_325_length_30116_cov_4.264147 8252..8254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3050.t1.CDS1Gcaud3050.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_325_length_30116_cov_4.264147 8252..8497 -
Gcaud3050.t1.CDS2Gcaud3050.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_325_length_30116_cov_4.264147 8581..8724 -
Gcaud3050.t1.CDS3Gcaud3050.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_325_length_30116_cov_4.264147 8797..8975 -
Gcaud3050.t1.CDS4Gcaud3050.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_325_length_30116_cov_4.264147 9083..10091 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3050.t1.exon1Gcaud3050.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_325_length_30116_cov_4.264147 8252..8497 -
Gcaud3050.t1.exon2Gcaud3050.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_325_length_30116_cov_4.264147 8581..8724 -
Gcaud3050.t1.exon3Gcaud3050.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_325_length_30116_cov_4.264147 8797..8975 -
Gcaud3050.t1.exon4Gcaud3050.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_325_length_30116_cov_4.264147 9083..10091 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3050.t1.intron1Gcaud3050.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_325_length_30116_cov_4.264147 8498..8580 -
Gcaud3050.t1.intron2Gcaud3050.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_325_length_30116_cov_4.264147 8725..8796 -
Gcaud3050.t1.intron3Gcaud3050.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_325_length_30116_cov_4.264147 8976..9082 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3050.t1.start1Gcaud3050.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_325_length_30116_cov_4.264147 10089..10091 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3050.t1 ID=Gcaud3050.t1|Name=Gcaud3050.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=526bp
MSSPVATAFALLLILSVVRANNDCNDIGLSDFDCTSYDPNACYNNMCIPE
RQRQQSKFEPCKTNICFLLKQEAPIVIIPNDRQSRQSISVPFKCNESKER
GVSGSLTDLFTTSTAGEQYCVWVGDNTQCTWNMIQHLVASDDEYMFAAGG
PMLETPQRKCHHVPSSSWLDDRMVVVGNSTSAPNEDPWLIVTFPFSRNAW
WWFAGILFAHIVVFAFLAWRVHHRLHYKLAATYFLLTGDEGNILESKFFN
EGLQQRTQEETRRINRLTIVASVFRFSLKMAFLVFLVFYEAGLVNLLFFQ
DNSAVSNRAVGSISRGKLPKYCVMKDSALANVWRNRVDPSNEVGENDELR
WREEDGLLSCIHRIIDVNDEVRFAVSYEIEAKFQIEKHNKENGDSGTRLQ
IFELQDDIYRFNSGWLFKKPENELQRKRLAEMNIRLVQSRVNGSLEEWLG
GGETPKQRNKVTAQVLAITFTPFVYVPLLIVLLLLILWGRLELNWHWNFW
CWAQGRRKKNRRGDEEHGNIAMAAY*
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spliced messenger RNA

>Gcaud3050.t1 ID=Gcaud3050.t1|Name=Gcaud3050.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1578bp|location=Sequence derived from alignment at NODE_325_length_30116_cov_4.264147:8252..10091- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAGCCCCGTCGCTACCGCCTTCGCGCTGCTCTTGATCTTGAGCGT
CGTGCGCGCCAACAACGATTGCAATGACATTGGTCTTTCCGATTTTGATT
GCACAAGCTATGATCCAAATGCGTGTTACAATAACATGTGCATCCCTGAG
CGCCAGCGCCAACAATCCAAGTTTGAGCCGTGCAAGACAAACATTTGTTT
CCTGCTCAAACAAGAAGCGCCCATTGTGATCATCCCCAACGATCGACAGA
GTCGCCAGAGCATCTCTGTACCGTTCAAATGCAACGAAAGTAAGGAAAGA
GGCGTCAGCGGAAGCCTCACAGATTTGTTTACGACCAGCACAGCTGGGGA
GCAGTATTGCGTATGGGTGGGCGATAATACGCAATGCACTTGGAACATGA
TACAGCATCTGGTAGCATCTGATGACGAATACATGTTTGCTGCGGGAGGC
CCAATGCTAGAAACGCCTCAAAGAAAATGTCACCACGTGCCAAGCAGCTC
GTGGTTGGACGACAGAATGGTTGTCGTGGGCAATTCAACCTCCGCTCCGA
ATGAAGACCCTTGGCTAATCGTAACGTTCCCGTTCTCTAGAAATGCGTGG
TGGTGGTTTGCTGGCATTCTTTTCGCGCACATTGTCGTGTTTGCGTTTCT
GGCCTGGAGGGTTCACCATCGCCTGCATTACAAACTCGCTGCGACGTATT
TCCTTCTTACCGGAGATGAGGGAAACATTCTGGAGTCAAAGTTCTTCAAC
GAGGGGCTGCAACAACGCACACAAGAGGAAACCAGGAGAATTAACAGGTT
AACCATCGTGGCCTCCGTGTTTCGCTTTTCTCTCAAGATGGCCTTCCTAG
TGTTCCTCGTGTTCTACGAGGCTGGCCTGGTCAACCTGTTGTTCTTCCAA
GACAATTCCGCCGTTTCGAACAGAGCTGTAGGGTCAATATCGAGAGGAAA
GCTGCCAAAGTACTGTGTGATGAAAGATTCTGCGCTTGCAAACGTCTGGC
GTAACAGAGTTGACCCGTCGAACGAAGTGGGTGAAAATGATGAGCTCAGA
TGGAGAGAGGAAGATGGCCTTCTATCGTGCATACACAGAATCATTGACGT
AAACGATGAAGTTCGTTTCGCTGTTTCCTATGAAATTGAAGCAAAGTTTC
AAATTGAAAAACACAATAAGGAGAACGGTGATAGTGGGACTCGACTGCAA
ATTTTCGAGTTACAGGACGATATTTATCGCTTCAACAGCGGTTGGTTGTT
TAAGAAACCCGAAAACGAGCTCCAACGGAAACGCCTTGCGGAAATGAACA
TACGTCTTGTTCAGAGTCGCGTCAATGGATCTTTGGAGGAATGGCTTGGT
GGCGGTGAAACCCCGAAACAGAGAAACAAGGTCACTGCACAAGTGCTTGC
CATAACTTTCACTCCTTTCGTATACGTACCCCTCCTCATCGTGCTTCTTC
TTCTCATTCTCTGGGGGAGACTTGAGCTGAACTGGCATTGGAATTTCTGG
TGCTGGGCACAAGGCAGAAGGAAGAAAAATAGACGCGGAGATGAAGAGCA
TGGTAATATCGCTATGGCTGCTTATTAA
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protein sequence of Gcaud3050.t1

>Gcaud3050.t1 ID=Gcaud3050.t1|Name=Gcaud3050.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=526bp
MSSPVATAFALLLILSVVRANNDCNDIGLSDFDCTSYDPNACYNNMCIPE
RQRQQSKFEPCKTNICFLLKQEAPIVIIPNDRQSRQSISVPFKCNESKER
GVSGSLTDLFTTSTAGEQYCVWVGDNTQCTWNMIQHLVASDDEYMFAAGG
PMLETPQRKCHHVPSSSWLDDRMVVVGNSTSAPNEDPWLIVTFPFSRNAW
WWFAGILFAHIVVFAFLAWRVHHRLHYKLAATYFLLTGDEGNILESKFFN
EGLQQRTQEETRRINRLTIVASVFRFSLKMAFLVFLVFYEAGLVNLLFFQ
DNSAVSNRAVGSISRGKLPKYCVMKDSALANVWRNRVDPSNEVGENDELR
WREEDGLLSCIHRIIDVNDEVRFAVSYEIEAKFQIEKHNKENGDSGTRLQ
IFELQDDIYRFNSGWLFKKPENELQRKRLAEMNIRLVQSRVNGSLEEWLG
GGETPKQRNKVTAQVLAITFTPFVYVPLLIVLLLLILWGRLELNWHWNFW
CWAQGRRKKNRRGDEEHGNIAMAAY*
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mRNA from alignment at NODE_325_length_30116_cov_4.264147:8252..10091-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3050.t1 ID=Gcaud3050.t1|Name=Gcaud3050.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1840bp|location=Sequence derived from alignment at NODE_325_length_30116_cov_4.264147:8252..10091- (Gracilaria caudata M_176_S67 male)
ATGTCAAGCCCCGTCGCTACCGCCTTCGCGCTGCTCTTGATCTTGAGCGT
CGTGCGCGCCAACAACGATTGCAATGACATTGGTCTTTCCGATTTTGATT
GCACAAGCTATGATCCAAATGCGTGTTACAATAACATGTGCATCCCTGAG
CGCCAGCGCCAACAATCCAAGTTTGAGCCGTGCAAGACAAACATTTGTTT
CCTGCTCAAACAAGAAGCGCCCATTGTGATCATCCCCAACGATCGACAGA
GTCGCCAGAGCATCTCTGTACCGTTCAAATGCAACGAAAGTAAGGAAAGA
GGCGTCAGCGGAAGCCTCACAGATTTGTTTACGACCAGCACAGCTGGGGA
GCAGTATTGCGTATGGGTGGGCGATAATACGCAATGCACTTGGAACATGA
TACAGCATCTGGTAGCATCTGATGACGAATACATGTTTGCTGCGGGAGGC
CCAATGCTAGAAACGCCTCAAAGAAAATGTCACCACGTGCCAAGCAGCTC
GTGGTTGGACGACAGAATGGTTGTCGTGGGCAATTCAACCTCCGCTCCGA
ATGAAGACCCTTGGCTAATCGTAACGTTCCCGTTCTCTAGAAATGCGTGG
TGGTGGTTTGCTGGCATTCTTTTCGCGCACATTGTCGTGTTTGCGTTTCT
GGCCTGGAGGGTTCACCATCGCCTGCATTACAAACTCGCTGCGACGTATT
TCCTTCTTACCGGAGATGAGGGAAACATTCTGGAGTCAAAGTTCTTCAAC
GAGGGGCTGCAACAACGCACACAAGAGGAAACCAGGAGAATTAACAGGTT
AACCATCGTGGCCTCCGTGTTTCGCTTTTCTCTCAAGATGGCCTTCCTAG
TGTTCCTCGTGTTCTACGAGGCTGGCCTGGTCAACCTGTTGTTCTTCCAA
GACAATTCCGCCGTTTCGAACAGAGCTGTAGGGTCAATATCGAGAGGAAA
GCTGCCAAAGTACTGTGTGATGAAAGATTCTGCGCTTGCAAACGTCTGGC
GTAACAGAGGTACGTCACTCAGCTCCACCCCCTCGCTTTTTATTCCCGCG
AAAACCGAGTTATGTGCACAAGAAGCTGACGCAATTGTGCTTCCGAACGC
ACCCATGTGTAAAAAGTTGACCCGTCGAACGAAGTGGGTGAAAATGATGA
GCTCAGATGGAGAGAGGAAGATGGCCTTCTATCGTGCATACACAGAATCA
TTGACGTAAACGATGAAGTTCGTTTCGCTGTTTCCTATGAAATTGAAGCA
AAGTTTCAAATTGAAAAACACAATAAGGAGAACGGTGATAGTGGGGTACG
TGCTTTGCTCCTCGCTGCTGCGTTTGTGATGGAATGAGCTAACACTTTCT
ATGCTTACTGTTTGAAGACTCGACTGCAAATTTTCGAGTTACAGGACGAT
ATTTATCGCTTCAACAGCGGTTGGTTGTTTAAGAAACCCGAAAACGAGCT
CCAACGGAAACGCCTTGCGGAAATGAACATACGTCTTGTTCAGAGTCGCG
TCAATGGATCTGTAAGTTATCATCTCTTGAACCTTATTTTTTACGTTATA
TCCTGCAGAATGCTAATCGAATGACGTGCCTTCTTTGCGCAAAGTTGGAG
GAATGGCTTGGTGGCGGTGAAACCCCGAAACAGAGAAACAAGGTCACTGC
ACAAGTGCTTGCCATAACTTTCACTCCTTTCGTATACGTACCCCTCCTCA
TCGTGCTTCTTCTTCTCATTCTCTGGGGGAGACTTGAGCTGAACTGGCAT
TGGAATTTCTGGTGCTGGGCACAAGGCAGAAGGAAGAAAAATAGACGCGG
AGATGAAGAGCATGGTAATATCGCTATGGCTGCTTATTAA
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Coding sequence (CDS) from alignment at NODE_325_length_30116_cov_4.264147:8252..10091-

>Gcaud3050.t1 ID=Gcaud3050.t1|Name=Gcaud3050.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1578bp|location=Sequence derived from alignment at NODE_325_length_30116_cov_4.264147:8252..10091- (Gracilaria caudata M_176_S67 male)
ATGTCAAGCCCCGTCGCTACCGCCTTCGCGCTGCTCTTGATCTTGAGCGT
CGTGCGCGCCAACAACGATTGCAATGACATTGGTCTTTCCGATTTTGATT
GCACAAGCTATGATCCAAATGCGTGTTACAATAACATGTGCATCCCTGAG
CGCCAGCGCCAACAATCCAAGTTTGAGCCGTGCAAGACAAACATTTGTTT
CCTGCTCAAACAAGAAGCGCCCATTGTGATCATCCCCAACGATCGACAGA
GTCGCCAGAGCATCTCTGTACCGTTCAAATGCAACGAAAGTAAGGAAAGA
GGCGTCAGCGGAAGCCTCACAGATTTGTTTACGACCAGCACAGCTGGGGA
GCAGTATTGCGTATGGGTGGGCGATAATACGCAATGCACTTGGAACATGA
TACAGCATCTGGTAGCATCTGATGACGAATACATGTTTGCTGCGGGAGGC
CCAATGCTAGAAACGCCTCAAAGAAAATGTCACCACGTGCCAAGCAGCTC
GTGGTTGGACGACAGAATGGTTGTCGTGGGCAATTCAACCTCCGCTCCGA
ATGAAGACCCTTGGCTAATCGTAACGTTCCCGTTCTCTAGAAATGCGTGG
TGGTGGTTTGCTGGCATTCTTTTCGCGCACATTGTCGTGTTTGCGTTTCT
GGCCTGGAGGGTTCACCATCGCCTGCATTACAAACTCGCTGCGACGTATT
TCCTTCTTACCGGAGATGAGGGAAACATTCTGGAGTCAAAGTTCTTCAAC
GAGGGGCTGCAACAACGCACACAAGAGGAAACCAGGAGAATTAACAGGTT
AACCATCGTGGCCTCCGTGTTTCGCTTTTCTCTCAAGATGGCCTTCCTAG
TGTTCCTCGTGTTCTACGAGGCTGGCCTGGTCAACCTGTTGTTCTTCCAA
GACAATTCCGCCGTTTCGAACAGAGCTGTAGGGTCAATATCGAGAGGAAA
GCTGCCAAAGTACTGTGTGATGAAAGATTCTGCGCTTGCAAACGTCTGGC
GTAACAGAGTTGACCCGTCGAACGAAGTGGGTGAAAATGATGAGCTCAGA
TGGAGAGAGGAAGATGGCCTTCTATCGTGCATACACAGAATCATTGACGT
AAACGATGAAGTTCGTTTCGCTGTTTCCTATGAAATTGAAGCAAAGTTTC
AAATTGAAAAACACAATAAGGAGAACGGTGATAGTGGGACTCGACTGCAA
ATTTTCGAGTTACAGGACGATATTTATCGCTTCAACAGCGGTTGGTTGTT
TAAGAAACCCGAAAACGAGCTCCAACGGAAACGCCTTGCGGAAATGAACA
TACGTCTTGTTCAGAGTCGCGTCAATGGATCTTTGGAGGAATGGCTTGGT
GGCGGTGAAACCCCGAAACAGAGAAACAAGGTCACTGCACAAGTGCTTGC
CATAACTTTCACTCCTTTCGTATACGTACCCCTCCTCATCGTGCTTCTTC
TTCTCATTCTCTGGGGGAGACTTGAGCTGAACTGGCATTGGAATTTCTGG
TGCTGGGCACAAGGCAGAAGGAAGAAAAATAGACGCGGAGATGAAGAGCA
TGGTAATATCGCTATGGCTGCTTATTAA
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