Gcaud3048.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3048.t1
Unique Name	Gcaud3048.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	484

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2246_length_6316_cov_4.160803	contig	NODE_2246_length_6316_cov_4.160803:1217..3199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3048	Gcaud3048	Gracilaria caudata M_176_S67 male	gene	NODE_2246_length_6316_cov_4.160803 1217..3199 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3048.t1	Gcaud3048.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2246_length_6316_cov_4.160803 1217..3199 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3048.t1.start1	Gcaud3048.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2246_length_6316_cov_4.160803 1217..1219 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3048.t1.CDS1	Gcaud3048.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2246_length_6316_cov_4.160803 1217..2028 +
Gcaud3048.t1.CDS2	Gcaud3048.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_2246_length_6316_cov_4.160803 2560..3199 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3048.t1.exon1	Gcaud3048.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2246_length_6316_cov_4.160803 1217..2028 +
Gcaud3048.t1.exon2	Gcaud3048.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_2246_length_6316_cov_4.160803 2560..3199 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3048.t1.intron1	Gcaud3048.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_2246_length_6316_cov_4.160803 2029..2559 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3048.t1.stop1	Gcaud3048.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2246_length_6316_cov_4.160803 3197..3199 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2246_length_6316_cov_4.160803:1217..3199+
coding sequence from alignment at NODE_2246_length_6316_cov_4.160803:1217..3199+

mRNA sequence

>Gcaud3048.t1 ID=Gcaud3048.t1|Name=Gcaud3048.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=484bp
MSLDSNDVEVQSQIEKAFKFFRRSQDLRSDDTWPYYLITRIKDHIKLVTI
EDSTSIPDCLAAALEIDSRMFDSVMERIDLFGFYMQEKQVRDMHPFWQQT
LLRILVTYTNCPRPRTTRTMVSTMLKNLEGVGLQHKEYDTAAEPDSELET
ETNNAGVIQDLNTSLKTMSTIFPKEDRLTGDESSPIIHSLTPILDQMEAS
AIPSDHRVTVLFTMLTGNARKVATKIRSQHRSLNTFLEEFYQKILYEPNI
HQRKINRWDALTFAKFKSDHPLQHVRNLGTGAVMLIEALETDAEQTDELD
EVYTYLTENADLNHEDTSEFDSWVCDLLDIIDDQNSSPVLVVKESLDQLQ
EAAQAFGVLHIDNVQKHFLLDTGAPKNICSRSWLSSASWTPVHTATLPIN
MQPFRFAGTSVSAENLVCLIAEVQSISGQKYIFRIVTFVLPPLPIPFLVG
LQTARDLSFDLCLRKQNSSHPRMVEIFSYQRRP*

spliced messenger RNA

>Gcaud3048.t1 ID=Gcaud3048.t1|Name=Gcaud3048.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at NODE_2246_length_6316_cov_4.160803:1217..3199+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTAGACAGTAATGATGTCGAAGTTCAATCTCAAATAGAAAAAGC
ATTTAAATTCTTTCGTCGTTCTCAAGATCTCCGATCTGATGATACCTGGC
CATATTATCTCATAACAAGAATCAAAGATCACATCAAACTCGTAACCATC
GAAGACTCTACGTCAATTCCCGATTGCCTTGCAGCCGCACTGGAAATCGA
TTCTCGAATGTTTGACTCCGTGATGGAACGAATCGATCTTTTTGGTTTCT
ACATGCAAGAGAAACAAGTCCGAGACATGCACCCATTCTGGCAACAAACT
CTATTACGCATCTTGGTCACGTATACCAACTGCCCTCGCCCGCGGACTAC
GCGCACAATGGTCAGCACGATGCTTAAAAATTTAGAAGGAGTGGGTTTGC
AGCACAAAGAATATGATACGGCAGCTGAGCCCGATTCCGAACTGGAAACT
GAGACAAATAATGCCGGAGTAATTCAAGACCTGAACACCAGCCTAAAAAC
TATGAGCACAATATTCCCTAAAGAGGATCGTCTTACAGGGGATGAGTCTT
CTCCAATCATCCACTCTCTGACTCCCATATTAGACCAAATGGAAGCCTCC
GCAATTCCGTCGGATCATCGCGTCACAGTGCTTTTCACTATGCTGACAGG
TAACGCACGGAAAGTGGCCACGAAGATAAGATCTCAACATCGATCCTTGA
ACACATTCCTCGAAGAATTCTATCAAAAGATCCTTTATGAGCCCAACATA
CATCAAAGAAAGATTAACCGATGGGATGCTCTCACATTTGCCAAGTTCAA
GTCGGACCACCCactgcaacatgtccggaacttgggcACAGGAGCCGTCA
TGCTGATCGAAGCCTTAGAAACAGACGCCGAACAGACGGACGAACTCGAC
GAAGTCTATACCTACTTAACCGAAAACGCGGACCTCAACCATGAGGATAC
CTCCGAGTTTGACTCATGGGTTTGCGACCTCCTCGACATCATTGACGATC
AAAACTCTAGTCCCGTCCTCGTCGTTAAGGAGTCACTGGACCAACTTCAG
GAAGCTGCGCAAGCTTTCGGTGTTTTACATATAGACAATGTTCAAAAACA
CTTCCTACTTGACACCGGAGCCCCAAAGAACATATGCAGTCGGTCATGGC
TCTCCAGCGCTTCGTGGACACCGGTCCACACTGCAACACTCCCGATCAAC
ATGCAGCCTTTCCGGTTCGCGGGAACTAGCGTATCCGCCGAGAACCTCGT
CTGCCTCATCGCCGAAGTTCAAAGTATTTCCGGACAGAAATACATATTCC
GTATCGTAACTTTCGTCCTTCCCCCACTCCCAATTCCGTTCCTAGTGGGC
CTACAAACCGCTCGAGACCTATCGTTTGACCTGTGCTTACGGAAGCAAAA
CAGTAGCCACCCGCGTATGGTTGAAATTTTCTCCTATCAACGAAGACCCT
GA

protein sequence of Gcaud3048.t1

>Gcaud3048.t1 ID=Gcaud3048.t1|Name=Gcaud3048.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=484bp
MSLDSNDVEVQSQIEKAFKFFRRSQDLRSDDTWPYYLITRIKDHIKLVTI
EDSTSIPDCLAAALEIDSRMFDSVMERIDLFGFYMQEKQVRDMHPFWQQT
LLRILVTYTNCPRPRTTRTMVSTMLKNLEGVGLQHKEYDTAAEPDSELET
ETNNAGVIQDLNTSLKTMSTIFPKEDRLTGDESSPIIHSLTPILDQMEAS
AIPSDHRVTVLFTMLTGNARKVATKIRSQHRSLNTFLEEFYQKILYEPNI
HQRKINRWDALTFAKFKSDHPLQHVRNLGTGAVMLIEALETDAEQTDELD
EVYTYLTENADLNHEDTSEFDSWVCDLLDIIDDQNSSPVLVVKESLDQLQ
EAAQAFGVLHIDNVQKHFLLDTGAPKNICSRSWLSSASWTPVHTATLPIN
MQPFRFAGTSVSAENLVCLIAEVQSISGQKYIFRIVTFVLPPLPIPFLVG
LQTARDLSFDLCLRKQNSSHPRMVEIFSYQRRP*

mRNA from alignment at NODE_2246_length_6316_cov_4.160803:1217..3199+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3048.t1 ID=Gcaud3048.t1|Name=Gcaud3048.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1983bp|location=Sequence derived from alignment at NODE_2246_length_6316_cov_4.160803:1217..3199+ (Gracilaria caudata M_176_S67 male)
ATGAGCTTAGACAGTAATGATGTCGAAGTTCAATCTCAAATAGAAAAAGC
ATTTAAATTCTTTCGTCGTTCTCAAGATCTCCGATCTGATGATACCTGGC
CATATTATCTCATAACAAGAATCAAAGATCACATCAAACTCGTAACCATC
GAAGACTCTACGTCAATTCCCGATTGCCTTGCAGCCGCACTGGAAATCGA
TTCTCGAATGTTTGACTCCGTGATGGAACGAATCGATCTTTTTGGTTTCT
ACATGCAAGAGAAACAAGTCCGAGACATGCACCCATTCTGGCAACAAACT
CTATTACGCATCTTGGTCACGTATACCAACTGCCCTCGCCCGCGGACTAC
GCGCACAATGGTCAGCACGATGCTTAAAAATTTAGAAGGAGTGGGTTTGC
AGCACAAAGAATATGATACGGCAGCTGAGCCCGATTCCGAACTGGAAACT
GAGACAAATAATGCCGGAGTAATTCAAGACCTGAACACCAGCCTAAAAAC
TATGAGCACAATATTCCCTAAAGAGGATCGTCTTACAGGGGATGAGTCTT
CTCCAATCATCCACTCTCTGACTCCCATATTAGACCAAATGGAAGCCTCC
GCAATTCCGTCGGATCATCGCGTCACAGTGCTTTTCACTATGCTGACAGG
TAACGCACGGAAAGTGGCCACGAAGATAAGATCTCAACATCGATCCTTGA
ACACATTCCTCGAAGAATTCTATCAAAAGATCCTTTATGAGCCCAACATA
CATCAAAGAAAGATTAACCGATGGGATGCTCTCACATTTGCCAAGTTCAA
GTCGGACCACCCGTCACTCCATGAAGCCTCTTCAGCCTGCATAGATCACC
TAAACGCACATTTTAAAGACCTCCCGCAGAACATGGTTaaccctctgacc
ctcctacaaaagcttcgcaacatcttctatccagaaccatggtgccaatc
attgtacgagaagtccgtcccaaacatggcgcctgagtcattcgctgagc
tcatcaaaacagctgctgccaaccatgatcaacgtcagaagacacttccc
gcatcgcacccatcatccacatacttcaccaaacgagatgagaagatcgc
agcaacaccatatgcgtcgaccttggttgcccatttcttttcaaaaacac
ctccaccaccccatttcaaacgcccgtggaagtaccgccgccagaatcaa
tatcgtcgtgataatgacagaaggctaccacgtcgcctcctccaatacaa
caatcggggccgccacgaacgccgctgctatggatgcaaccaggtgggcc
attacatccgcaactgcccccatcgcgaccgttactactccagactgcaa
catgtccggaacttgggcACAGGAGCCGTCATGCTGATCGAAGCCTTAGA
AACAGACGCCGAACAGACGGACGAACTCGACGAAGTCTATACCTACTTAA
CCGAAAACGCGGACCTCAACCATGAGGATACCTCCGAGTTTGACTCATGG
GTTTGCGACCTCCTCGACATCATTGACGATCAAAACTCTAGTCCCGTCCT
CGTCGTTAAGGAGTCACTGGACCAACTTCAGGAAGCTGCGCAAGCTTTCG
GTGTTTTACATATAGACAATGTTCAAAAACACTTCCTACTTGACACCGGA
GCCCCAAAGAACATATGCAGTCGGTCATGGCTCTCCAGCGCTTCGTGGAC
ACCGGTCCACACTGCAACACTCCCGATCAACATGCAGCCTTTCCGGTTCG
CGGGAACTAGCGTATCCGCCGAGAACCTCGTCTGCCTCATCGCCGAAGTT
CAAAGTATTTCCGGACAGAAATACATATTCCGTATCGTAACTTTCGTCCT
TCCCCCACTCCCAATTCCGTTCCTAGTGGGCCTACAAACCGCTCGAGACC
TATCGTTTGACCTGTGCTTACGGAAGCAAAACAGTAGCCACCCGCGTATG
GTTGAAATTTTCTCCTATCAACGAAGACCCTGA

Coding sequence (CDS) from alignment at NODE_2246_length_6316_cov_4.160803:1217..3199+

>Gcaud3048.t1 ID=Gcaud3048.t1|Name=Gcaud3048.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1452bp|location=Sequence derived from alignment at NODE_2246_length_6316_cov_4.160803:1217..3199+ (Gracilaria caudata M_176_S67 male)
ATGAGCTTAGACAGTAATGATGTCGAAGTTCAATCTCAAATAGAAAAAGC
ATTTAAATTCTTTCGTCGTTCTCAAGATCTCCGATCTGATGATACCTGGC
CATATTATCTCATAACAAGAATCAAAGATCACATCAAACTCGTAACCATC
GAAGACTCTACGTCAATTCCCGATTGCCTTGCAGCCGCACTGGAAATCGA
TTCTCGAATGTTTGACTCCGTGATGGAACGAATCGATCTTTTTGGTTTCT
ACATGCAAGAGAAACAAGTCCGAGACATGCACCCATTCTGGCAACAAACT
CTATTACGCATCTTGGTCACGTATACCAACTGCCCTCGCCCGCGGACTAC
GCGCACAATGGTCAGCACGATGCTTAAAAATTTAGAAGGAGTGGGTTTGC
AGCACAAAGAATATGATACGGCAGCTGAGCCCGATTCCGAACTGGAAACT
GAGACAAATAATGCCGGAGTAATTCAAGACCTGAACACCAGCCTAAAAAC
TATGAGCACAATATTCCCTAAAGAGGATCGTCTTACAGGGGATGAGTCTT
CTCCAATCATCCACTCTCTGACTCCCATATTAGACCAAATGGAAGCCTCC
GCAATTCCGTCGGATCATCGCGTCACAGTGCTTTTCACTATGCTGACAGG
TAACGCACGGAAAGTGGCCACGAAGATAAGATCTCAACATCGATCCTTGA
ACACATTCCTCGAAGAATTCTATCAAAAGATCCTTTATGAGCCCAACATA
CATCAAAGAAAGATTAACCGATGGGATGCTCTCACATTTGCCAAGTTCAA
GTCGGACCACCCactgcaacatgtccggaacttgggcACAGGAGCCGTCA
TGCTGATCGAAGCCTTAGAAACAGACGCCGAACAGACGGACGAACTCGAC
GAAGTCTATACCTACTTAACCGAAAACGCGGACCTCAACCATGAGGATAC
CTCCGAGTTTGACTCATGGGTTTGCGACCTCCTCGACATCATTGACGATC
AAAACTCTAGTCCCGTCCTCGTCGTTAAGGAGTCACTGGACCAACTTCAG
GAAGCTGCGCAAGCTTTCGGTGTTTTACATATAGACAATGTTCAAAAACA
CTTCCTACTTGACACCGGAGCCCCAAAGAACATATGCAGTCGGTCATGGC
TCTCCAGCGCTTCGTGGACACCGGTCCACACTGCAACACTCCCGATCAAC
ATGCAGCCTTTCCGGTTCGCGGGAACTAGCGTATCCGCCGAGAACCTCGT
CTGCCTCATCGCCGAAGTTCAAAGTATTTCCGGACAGAAATACATATTCC
GTATCGTAACTTTCGTCCTTCCCCCACTCCCAATTCCGTTCCTAGTGGGC
CTACAAACCGCTCGAGACCTATCGTTTGACCTGTGCTTACGGAAGCAAAA
CAGTAGCCACCCGCGTATGGTTGAAATTTTCTCCTATCAACGAAGACCCT
GA