Gcaud3047.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3047.t1
Unique Name	Gcaud3047.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	398

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2951_length_4346_cov_4.759342	contig	NODE_2951_length_4346_cov_4.759342:2271..3464 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	208439.AJAP_22240
PFAMs	Calx-beta,HYR,VWA
Max annot lvl	201174\|Actinobacteria
Evalue	3.85e-34
EggNOG OGs	COG2304@1\|root,COG2304@2\|Bacteria,2IDJM@201174\|Actinobacteria,4E2D1@85010\|Pseudonocardiales
Description	Calx-beta domain
COG category	V

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3047	Gcaud3047	Gracilaria caudata M_176_S67 male	gene	NODE_2951_length_4346_cov_4.759342 2271..3464 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3047.t1.stop1	Gcaud3047.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2951_length_4346_cov_4.759342 2271..2273 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3047.t1.CDS1	Gcaud3047.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2951_length_4346_cov_4.759342 2271..3464 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3047.t1.exon1	Gcaud3047.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2951_length_4346_cov_4.759342 2271..3464 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3047.t1.start1	Gcaud3047.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2951_length_4346_cov_4.759342 3462..3464 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3047.t1	Gcaud3047.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2951_length_4346_cov_4.759342 2271..3464 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2951_length_4346_cov_4.759342:2271..3464-
coding sequence from alignment at NODE_2951_length_4346_cov_4.759342:2271..3464-

mRNA sequence

>Gcaud3047.t1 ID=Gcaud3047.t1|Name=Gcaud3047.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=398bp
MKTSNFFLLLPVLLFTRTFAQSGSVEAIGRCPATCFPRIEDAFRECARFL
TIGCVLTPCAAGGFGCPIPDPIETENEVLPGGEVLIDGLSVLDFFEFKVN
LNTSTSFPSRTDLYLLSDATGSISAAIGEVRTRFTEIVDLFEGVTNAQFG
IGFFRDEEDEGLDNGFSNLQGITSDRSAVLNAIQSLNANGGGDADEANLV
ALHKVATDPAIGWRENTRRILVYFGDFPGHEPTCVEGKTLTRESVINDLQ
ELNITVIAASFNPGLDGTPVPFGCSSGSAGPGQGTAISSATGGILVPNTQ
QTELIEAIQSAVRGLNRTFDLDSSDCDGMLTTSTDPSLPITLGPDESQVL
DQIVQIQAGVCAGGNTFECVLDYTESGASLPPTTVKLVNIQGCPDFD*

spliced messenger RNA

>Gcaud3047.t1 ID=Gcaud3047.t1|Name=Gcaud3047.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_2951_length_4346_cov_4.759342:2271..3464- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACTTCAAATTTCTTTCTTCTTCTGCCGGTTCTACTTTTCACTAG
GACATTTGCTCAGAGTGGATCCGTCGAAGCCATAGGAAGATGCCCTGCTA
CATGTTTTCCACGCATAGAAGACGCTTTTAGGGAGTGTGCTCGCTTCCTG
ACAATTGGATGTGTCCTAACTCCGTGCGCTGCTGGTGGTTTTGGATGCCC
CATTCCCGATCCAATCGAAACTGAGAATGAGGTTCTTCCTGGAGGAGAAG
TTCTTATCGATGGGCTAAGCGTTCTAGACTTTTTTGAATTCAAGGTGAAT
TTGAACACATCAACATCCTTCCCGTCGCGAACAGACCTCTACCTTCTGAG
TGACGCGACAGGATCTATTTCCGCGGCCATTGGTGAGGTAAGGACCCGAT
TCACTGAAATTGTCGATCTCTTTGAAGGGGTAACCAACGCTCAATTCGGA
ATTGGATTCTTTCGCGATGAAGAAGACGAAGGATTGGATAATGGATTTTC
CAATTTGCAAGGCATCACCAGCGATCGCTCTGCTGTGCTCAACGCCATTC
AATCGCTAAACGCAAATGGAGGAGGAGATGCAGATGAAGCCAATCTCGTA
GCTCTGCACAAGGTAGCCACGGACCCAGCCATTGGATGGAGAGAGAACAC
TCGAAGAATTCTAGTTTACTTTGGTGACTTTCCTGGTCATGAACCTACCT
GCGTGGAGGGAAAGACGCTGACAAGGGAATCAGTTATTAACGACCTGCAG
GAATTGAACATAACAGTGATTGCTGCCAGTTTTAACCCTGGGCTTGACGG
CACGCCAGTTCCATTTGGATGCAGTTCTGGAAGCGCAGGTCCCGGTCAGG
GCACGGCTATATCATCAGCAACTGGTGGTATTCTTGTGCCTAATACCCAA
CAGACGGAACTTATTGAAGCGATCCAAAGCGCCGTGCGAGGTTTGAATAG
GACTTTTGATCTCGACAGCTCAGACTGTGACGGCATGCTGACCACTTCCA
CTGATCCCTCTTTACCAATTACTCTTGGTCCCGATGAATCACAAGTTTTG
GACCAAATTGTTCAGATTCAAGCCGGAGTGTGCGCGGGAGGAAACACTTT
TGAATGTGTCCTAGATTATACTGAATCCGGAGCTAGTCTTCCGCCCACGA
CCGTTAAGCTTGTGAACATTCAAGGATGTCCAGACTTCGATTAG

protein sequence of Gcaud3047.t1

>Gcaud3047.t1 ID=Gcaud3047.t1|Name=Gcaud3047.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=398bp
MKTSNFFLLLPVLLFTRTFAQSGSVEAIGRCPATCFPRIEDAFRECARFL
TIGCVLTPCAAGGFGCPIPDPIETENEVLPGGEVLIDGLSVLDFFEFKVN
LNTSTSFPSRTDLYLLSDATGSISAAIGEVRTRFTEIVDLFEGVTNAQFG
IGFFRDEEDEGLDNGFSNLQGITSDRSAVLNAIQSLNANGGGDADEANLV
ALHKVATDPAIGWRENTRRILVYFGDFPGHEPTCVEGKTLTRESVINDLQ
ELNITVIAASFNPGLDGTPVPFGCSSGSAGPGQGTAISSATGGILVPNTQ
QTELIEAIQSAVRGLNRTFDLDSSDCDGMLTTSTDPSLPITLGPDESQVL
DQIVQIQAGVCAGGNTFECVLDYTESGASLPPTTVKLVNIQGCPDFD*

mRNA from alignment at NODE_2951_length_4346_cov_4.759342:2271..3464-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3047.t1 ID=Gcaud3047.t1|Name=Gcaud3047.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_2951_length_4346_cov_4.759342:2271..3464- (Gracilaria caudata M_176_S67 male)
ATGAAGACTTCAAATTTCTTTCTTCTTCTGCCGGTTCTACTTTTCACTAG
GACATTTGCTCAGAGTGGATCCGTCGAAGCCATAGGAAGATGCCCTGCTA
CATGTTTTCCACGCATAGAAGACGCTTTTAGGGAGTGTGCTCGCTTCCTG
ACAATTGGATGTGTCCTAACTCCGTGCGCTGCTGGTGGTTTTGGATGCCC
CATTCCCGATCCAATCGAAACTGAGAATGAGGTTCTTCCTGGAGGAGAAG
TTCTTATCGATGGGCTAAGCGTTCTAGACTTTTTTGAATTCAAGGTGAAT
TTGAACACATCAACATCCTTCCCGTCGCGAACAGACCTCTACCTTCTGAG
TGACGCGACAGGATCTATTTCCGCGGCCATTGGTGAGGTAAGGACCCGAT
TCACTGAAATTGTCGATCTCTTTGAAGGGGTAACCAACGCTCAATTCGGA
ATTGGATTCTTTCGCGATGAAGAAGACGAAGGATTGGATAATGGATTTTC
CAATTTGCAAGGCATCACCAGCGATCGCTCTGCTGTGCTCAACGCCATTC
AATCGCTAAACGCAAATGGAGGAGGAGATGCAGATGAAGCCAATCTCGTA
GCTCTGCACAAGGTAGCCACGGACCCAGCCATTGGATGGAGAGAGAACAC
TCGAAGAATTCTAGTTTACTTTGGTGACTTTCCTGGTCATGAACCTACCT
GCGTGGAGGGAAAGACGCTGACAAGGGAATCAGTTATTAACGACCTGCAG
GAATTGAACATAACAGTGATTGCTGCCAGTTTTAACCCTGGGCTTGACGG
CACGCCAGTTCCATTTGGATGCAGTTCTGGAAGCGCAGGTCCCGGTCAGG
GCACGGCTATATCATCAGCAACTGGTGGTATTCTTGTGCCTAATACCCAA
CAGACGGAACTTATTGAAGCGATCCAAAGCGCCGTGCGAGGTTTGAATAG
GACTTTTGATCTCGACAGCTCAGACTGTGACGGCATGCTGACCACTTCCA
CTGATCCCTCTTTACCAATTACTCTTGGTCCCGATGAATCACAAGTTTTG
GACCAAATTGTTCAGATTCAAGCCGGAGTGTGCGCGGGAGGAAACACTTT
TGAATGTGTCCTAGATTATACTGAATCCGGAGCTAGTCTTCCGCCCACGA
CCGTTAAGCTTGTGAACATTCAAGGATGTCCAGACTTCGATTAG

Coding sequence (CDS) from alignment at NODE_2951_length_4346_cov_4.759342:2271..3464-

>Gcaud3047.t1 ID=Gcaud3047.t1|Name=Gcaud3047.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1194bp|location=Sequence derived from alignment at NODE_2951_length_4346_cov_4.759342:2271..3464- (Gracilaria caudata M_176_S67 male)
ATGAAGACTTCAAATTTCTTTCTTCTTCTGCCGGTTCTACTTTTCACTAG
GACATTTGCTCAGAGTGGATCCGTCGAAGCCATAGGAAGATGCCCTGCTA
CATGTTTTCCACGCATAGAAGACGCTTTTAGGGAGTGTGCTCGCTTCCTG
ACAATTGGATGTGTCCTAACTCCGTGCGCTGCTGGTGGTTTTGGATGCCC
CATTCCCGATCCAATCGAAACTGAGAATGAGGTTCTTCCTGGAGGAGAAG
TTCTTATCGATGGGCTAAGCGTTCTAGACTTTTTTGAATTCAAGGTGAAT
TTGAACACATCAACATCCTTCCCGTCGCGAACAGACCTCTACCTTCTGAG
TGACGCGACAGGATCTATTTCCGCGGCCATTGGTGAGGTAAGGACCCGAT
TCACTGAAATTGTCGATCTCTTTGAAGGGGTAACCAACGCTCAATTCGGA
ATTGGATTCTTTCGCGATGAAGAAGACGAAGGATTGGATAATGGATTTTC
CAATTTGCAAGGCATCACCAGCGATCGCTCTGCTGTGCTCAACGCCATTC
AATCGCTAAACGCAAATGGAGGAGGAGATGCAGATGAAGCCAATCTCGTA
GCTCTGCACAAGGTAGCCACGGACCCAGCCATTGGATGGAGAGAGAACAC
TCGAAGAATTCTAGTTTACTTTGGTGACTTTCCTGGTCATGAACCTACCT
GCGTGGAGGGAAAGACGCTGACAAGGGAATCAGTTATTAACGACCTGCAG
GAATTGAACATAACAGTGATTGCTGCCAGTTTTAACCCTGGGCTTGACGG
CACGCCAGTTCCATTTGGATGCAGTTCTGGAAGCGCAGGTCCCGGTCAGG
GCACGGCTATATCATCAGCAACTGGTGGTATTCTTGTGCCTAATACCCAA
CAGACGGAACTTATTGAAGCGATCCAAAGCGCCGTGCGAGGTTTGAATAG
GACTTTTGATCTCGACAGCTCAGACTGTGACGGCATGCTGACCACTTCCA
CTGATCCCTCTTTACCAATTACTCTTGGTCCCGATGAATCACAAGTTTTG
GACCAAATTGTTCAGATTCAAGCCGGAGTGTGCGCGGGAGGAAACACTTT
TGAATGTGTCCTAGATTATACTGAATCCGGAGCTAGTCTTCCGCCCACGA
CCGTTAAGCTTGTGAACATTCAAGGATGTCCAGACTTCGATTAG