Gcaud3042.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3042.t1
Unique Name	Gcaud3042.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	340

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_870_length_16779_cov_4.279183	contig	NODE_870_length_16779_cov_4.279183:440..1459 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3042	Gcaud3042	Gracilaria caudata M_176_S67 male	gene	NODE_870_length_16779_cov_4.279183 440..1459 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3042.t1.start1	Gcaud3042.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_870_length_16779_cov_4.279183 440..442 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3042.t1.CDS1	Gcaud3042.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_870_length_16779_cov_4.279183 440..1459 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3042.t1.exon1	Gcaud3042.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_870_length_16779_cov_4.279183 440..1459 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3042.t1.stop1	Gcaud3042.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_870_length_16779_cov_4.279183 1457..1459 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3042.t1	Gcaud3042.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_870_length_16779_cov_4.279183 440..1459 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_870_length_16779_cov_4.279183:440..1459+
coding sequence from alignment at NODE_870_length_16779_cov_4.279183:440..1459+

mRNA sequence

>Gcaud3042.t1 ID=Gcaud3042.t1|Name=Gcaud3042.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=340bp
MNSALRLVLFLCVLVLPLLPRRSRTLRELSFRSVRVEALCDTPSCRQCSA
QCAEYRDVADELRACEKSLPLTASVWPWDAYIQCVAHDCVPHFFDHACGL
LTGDNHTNVLSALSSETSRVEQRIQQLRQQTQSVFQSMHINDTMQQYHRQ
SLQHIQKCDQLFIEALGVRAQYSQLVKYIESIDYRIIQQEVTRLNFENED
FNRHLDFWKRHNETLHLVVSTSPEAIKDARDALYSEMRQYETDALLIKAL
RNGSYTKEKQARFTMRLREKVRKQVDDLRARNAMMKREAEFIKDARSELY
NLLHSVWRSMSLHRLNVTCGANVLSDAVTLAFKAESQLL*

spliced messenger RNA

>Gcaud3042.t1 ID=Gcaud3042.t1|Name=Gcaud3042.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at NODE_870_length_16779_cov_4.279183:440..1459+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAGCGCTTTGCGACTTGTGCTCTTTTTGTGTGTGTTGGTGCTGCC
GTTGTTGCCGCGGCGTTCGCGAACGCTACGCGAGCTCAGCTTCCGATCGG
TGCGAGTGGAAGCTCTTTGTGACACGCCGTCTTGTCGACAGTGTTCTGCG
CAATGCGCCGAGTACCGCGACGTTGCGGACGAGCTGCGCGCGTGTGAAAA
GTCCCTGCCGCTCACCGCGTCCGTGTGGCCGTGGGATGCGTACATCCAAT
GCGTGGCGCACGACTGTGTGCCGCACTTCTTCGACCACGCTTGCGGACTG
CTCACGGGCGACAACCACACCAACGTTCTTTCCGCGCTCTCGTCTGAGAC
CAGCAGAGTGGAGCAACGCATTCAGCAGCTGCGGCAGCAGACGCAGAGCG
TGTTTCAAAGCATGCACATAAACGACACCATGCAGCAGTACCATCGTCAA
TCGCTGCAGCACATTCAGAAATGCGACCAACTCTTCATTGAGGCGTTGGG
CGTTCGAGCGCAGTACAGTCAGCTTGTCAAGTACATTGAGTCCATTGATT
ATCGCATCATTCAGCAGGAAGTCACGCGTCTCAACTTTGAAAACGAAGAC
TTCAACAGACACTTAGACTTCTGGAAGCGCCACAACGAAACGCTGCATCT
GGTCGTGAGCACCAGTCCCGAGGCCATTAAAGATGCGCGAGACGCGCTCT
ACTCAGAGATGAGGCAGTACGAAACCGACGCTTTATTGATCAAGGCTTTG
CGGAATGGTTCGTACACAAAGGAGAAACAAGCTCGCTTCACCATGCGTCT
GAGAGAGAAGGTCAGAAAGCAGGTGGACGACCTGCGCGCTCGAAACGCCA
TGATGAAGCGTGAAGCAGAGTTTATCAAGGATGCGCGTAGTGAGCTTTAC
AACCTGCTGCACAGTGTCTGGCGCAGCATGAGTCTGCACAGACTCAATGT
GACCTGCGGCGCCAATGTACTGAGCGACGCAGTTACGCTCGCCTTCAAGG
CCGAAAGCCAGCTGCTTTGA

protein sequence of Gcaud3042.t1

>Gcaud3042.t1 ID=Gcaud3042.t1|Name=Gcaud3042.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=340bp
MNSALRLVLFLCVLVLPLLPRRSRTLRELSFRSVRVEALCDTPSCRQCSA
QCAEYRDVADELRACEKSLPLTASVWPWDAYIQCVAHDCVPHFFDHACGL
LTGDNHTNVLSALSSETSRVEQRIQQLRQQTQSVFQSMHINDTMQQYHRQ
SLQHIQKCDQLFIEALGVRAQYSQLVKYIESIDYRIIQQEVTRLNFENED
FNRHLDFWKRHNETLHLVVSTSPEAIKDARDALYSEMRQYETDALLIKAL
RNGSYTKEKQARFTMRLREKVRKQVDDLRARNAMMKREAEFIKDARSELY
NLLHSVWRSMSLHRLNVTCGANVLSDAVTLAFKAESQLL*

mRNA from alignment at NODE_870_length_16779_cov_4.279183:440..1459+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3042.t1 ID=Gcaud3042.t1|Name=Gcaud3042.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at NODE_870_length_16779_cov_4.279183:440..1459+ (Gracilaria caudata M_176_S67 male)
ATGAATAGCGCTTTGCGACTTGTGCTCTTTTTGTGTGTGTTGGTGCTGCC
GTTGTTGCCGCGGCGTTCGCGAACGCTACGCGAGCTCAGCTTCCGATCGG
TGCGAGTGGAAGCTCTTTGTGACACGCCGTCTTGTCGACAGTGTTCTGCG
CAATGCGCCGAGTACCGCGACGTTGCGGACGAGCTGCGCGCGTGTGAAAA
GTCCCTGCCGCTCACCGCGTCCGTGTGGCCGTGGGATGCGTACATCCAAT
GCGTGGCGCACGACTGTGTGCCGCACTTCTTCGACCACGCTTGCGGACTG
CTCACGGGCGACAACCACACCAACGTTCTTTCCGCGCTCTCGTCTGAGAC
CAGCAGAGTGGAGCAACGCATTCAGCAGCTGCGGCAGCAGACGCAGAGCG
TGTTTCAAAGCATGCACATAAACGACACCATGCAGCAGTACCATCGTCAA
TCGCTGCAGCACATTCAGAAATGCGACCAACTCTTCATTGAGGCGTTGGG
CGTTCGAGCGCAGTACAGTCAGCTTGTCAAGTACATTGAGTCCATTGATT
ATCGCATCATTCAGCAGGAAGTCACGCGTCTCAACTTTGAAAACGAAGAC
TTCAACAGACACTTAGACTTCTGGAAGCGCCACAACGAAACGCTGCATCT
GGTCGTGAGCACCAGTCCCGAGGCCATTAAAGATGCGCGAGACGCGCTCT
ACTCAGAGATGAGGCAGTACGAAACCGACGCTTTATTGATCAAGGCTTTG
CGGAATGGTTCGTACACAAAGGAGAAACAAGCTCGCTTCACCATGCGTCT
GAGAGAGAAGGTCAGAAAGCAGGTGGACGACCTGCGCGCTCGAAACGCCA
TGATGAAGCGTGAAGCAGAGTTTATCAAGGATGCGCGTAGTGAGCTTTAC
AACCTGCTGCACAGTGTCTGGCGCAGCATGAGTCTGCACAGACTCAATGT
GACCTGCGGCGCCAATGTACTGAGCGACGCAGTTACGCTCGCCTTCAAGG
CCGAAAGCCAGCTGCTTTGA

Coding sequence (CDS) from alignment at NODE_870_length_16779_cov_4.279183:440..1459+

>Gcaud3042.t1 ID=Gcaud3042.t1|Name=Gcaud3042.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1020bp|location=Sequence derived from alignment at NODE_870_length_16779_cov_4.279183:440..1459+ (Gracilaria caudata M_176_S67 male)
ATGAATAGCGCTTTGCGACTTGTGCTCTTTTTGTGTGTGTTGGTGCTGCC
GTTGTTGCCGCGGCGTTCGCGAACGCTACGCGAGCTCAGCTTCCGATCGG
TGCGAGTGGAAGCTCTTTGTGACACGCCGTCTTGTCGACAGTGTTCTGCG
CAATGCGCCGAGTACCGCGACGTTGCGGACGAGCTGCGCGCGTGTGAAAA
GTCCCTGCCGCTCACCGCGTCCGTGTGGCCGTGGGATGCGTACATCCAAT
GCGTGGCGCACGACTGTGTGCCGCACTTCTTCGACCACGCTTGCGGACTG
CTCACGGGCGACAACCACACCAACGTTCTTTCCGCGCTCTCGTCTGAGAC
CAGCAGAGTGGAGCAACGCATTCAGCAGCTGCGGCAGCAGACGCAGAGCG
TGTTTCAAAGCATGCACATAAACGACACCATGCAGCAGTACCATCGTCAA
TCGCTGCAGCACATTCAGAAATGCGACCAACTCTTCATTGAGGCGTTGGG
CGTTCGAGCGCAGTACAGTCAGCTTGTCAAGTACATTGAGTCCATTGATT
ATCGCATCATTCAGCAGGAAGTCACGCGTCTCAACTTTGAAAACGAAGAC
TTCAACAGACACTTAGACTTCTGGAAGCGCCACAACGAAACGCTGCATCT
GGTCGTGAGCACCAGTCCCGAGGCCATTAAAGATGCGCGAGACGCGCTCT
ACTCAGAGATGAGGCAGTACGAAACCGACGCTTTATTGATCAAGGCTTTG
CGGAATGGTTCGTACACAAAGGAGAAACAAGCTCGCTTCACCATGCGTCT
GAGAGAGAAGGTCAGAAAGCAGGTGGACGACCTGCGCGCTCGAAACGCCA
TGATGAAGCGTGAAGCAGAGTTTATCAAGGATGCGCGTAGTGAGCTTTAC
AACCTGCTGCACAGTGTCTGGCGCAGCATGAGTCTGCACAGACTCAATGT
GACCTGCGGCGCCAATGTACTGAGCGACGCAGTTACGCTCGCCTTCAAGG
CCGAAAGCCAGCTGCTTTGA