Gcaud3036.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3036.t1
Unique NameGcaud3036.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_328_length_29789_cov_4.262846contigNODE_328_length_29789_cov_4.262846:12727..13688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009033988.1
PFAMsLysM,Pectate_lyase_3,WSC
Max annot lvl2759|Eukaryota
Evalue3.84e-17
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3036Gcaud3036Gracilaria caudata M_176_S67 malegeneNODE_328_length_29789_cov_4.262846 12727..13688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3036.t1Gcaud3036.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_328_length_29789_cov_4.262846 12727..13688 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3036.t1.stop1Gcaud3036.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_328_length_29789_cov_4.262846 12727..12729 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3036.t1.CDS1Gcaud3036.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_328_length_29789_cov_4.262846 12727..13475 -
Gcaud3036.t1.CDS2Gcaud3036.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_328_length_29789_cov_4.262846 13664..13688 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3036.t1.exon1Gcaud3036.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_328_length_29789_cov_4.262846 12727..13475 -
Gcaud3036.t1.exon2Gcaud3036.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_328_length_29789_cov_4.262846 13664..13688 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3036.t1.intron1Gcaud3036.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_328_length_29789_cov_4.262846 13476..13663 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3036.t1.start1Gcaud3036.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_328_length_29789_cov_4.262846 13686..13688 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3036.t1 ID=Gcaud3036.t1|Name=Gcaud3036.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp
MLQVTQFCRYSNARQKELHLVAFRNTNLGFKQYHRLCEPQCTPIYSRSTS
VSFRNVKDGVTYRDLFQEANKFVGSVVVIANADIYFDHTIYCAGFIDKDA
VLALSRHPSPDCISSARGASGREPVDFCGGYHPIYAASHDGFVFVPPVPQ
QVIDGLEGLRVNELGAENVVIHLMQNAGRNVVNPCERIHLFHQHCGNERA
SSAKKRISDPKWRRLFGSTTEWGYGGSSWIHKGLRSRYGNVDCMALGLVM
EKKKGLH*
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spliced messenger RNA

>Gcaud3036.t1 ID=Gcaud3036.t1|Name=Gcaud3036.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:12727..13688- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACAAGTCACTCAGTTCTGTCGCTACTCAAACGCTCGACAAAAGGA
ATTACATCTTGTGGCGTTTCGCAACACCAATCTTGGATTCAAACAGTATC
ACCGTCTGTGTGAACCGCAGTGCACACCTATATATTCGAGGAGCACCAGC
GTGAGTTTTCGTAACGTGAAAGATGGGGTGACATATCGGGATCTTTTTCA
GGAGGCGAACAAGTTCGTTGGGTCGGTCGTGGTGATTGCCAACGCTGATA
TCTACTTTGACCATACCATTTACTGTGCGGGATTTATCGACAAGGATGCA
GTTCTGGCTCTTTCACGACATCCGTCTCCTGACTGTATTTCTTCTGCACG
TGGCGCTTCGGGGCGAGAACCGGTAGACTTTTGTGGAGGGTACCATCCTA
TATACGCTGCCAGTCATGATGGGTTTGTATTCGTGCCACCAGTGCCGCAG
CAAGTGATAGATGGGCTGGAAGGTTTGCGCGTTAATGAGCTGGGAGCCGA
AAATGTTGTGATTCACCTGATGCAGAACGCTGGACGCAATGTAGTGAACC
CGTGTGAGCGAATACACCTATTCCACCAACATTGCGGCAACGAGAGGGCT
TCGAGCGCGAAGAAGAGAATTTCAGATCCGAAATGGCGACGGTTATTCGG
CTCCACAACGGAATGGGGGTACGGAGGAAGCTCGTGGATACATAAAGGAC
TGAGATCAAGATATGGTAATGTAGATTGCATGGCATTAGGATTGGTGATG
GAGAAAAAGAAAGGTTTACATTAA
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protein sequence of Gcaud3036.t1

>Gcaud3036.t1 ID=Gcaud3036.t1|Name=Gcaud3036.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MLQVTQFCRYSNARQKELHLVAFRNTNLGFKQYHRLCEPQCTPIYSRSTS
VSFRNVKDGVTYRDLFQEANKFVGSVVVIANADIYFDHTIYCAGFIDKDA
VLALSRHPSPDCISSARGASGREPVDFCGGYHPIYAASHDGFVFVPPVPQ
QVIDGLEGLRVNELGAENVVIHLMQNAGRNVVNPCERIHLFHQHCGNERA
SSAKKRISDPKWRRLFGSTTEWGYGGSSWIHKGLRSRYGNVDCMALGLVM
EKKKGLH*
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mRNA from alignment at NODE_328_length_29789_cov_4.262846:12727..13688-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3036.t1 ID=Gcaud3036.t1|Name=Gcaud3036.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=962bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:12727..13688- (Gracilaria caudata M_176_S67 male)
ATGCTACAAGTCACTCAGTTCTGTCGTACGTATTGTTCGGGCTTCTGTTT
CACGTGATTGTGTCGCAAATCTCGGCGCCACATGGACGAGGTGTGGTGAA
TGTGCACAGACGTCGGGAAGAAGAGAATCTGCTGCCACGTTACGCCAACT
CGTTCATTCCTTCCAGTTTGCCGCGCGAGCCGAATATTACTTTGCTGACG
ACCGGTTTCCAAGGCTACTCAAACGCTCGACAAAAGGAATTACATCTTGT
GGCGTTTCGCAACACCAATCTTGGATTCAAACAGTATCACCGTCTGTGTG
AACCGCAGTGCACACCTATATATTCGAGGAGCACCAGCGTGAGTTTTCGT
AACGTGAAAGATGGGGTGACATATCGGGATCTTTTTCAGGAGGCGAACAA
GTTCGTTGGGTCGGTCGTGGTGATTGCCAACGCTGATATCTACTTTGACC
ATACCATTTACTGTGCGGGATTTATCGACAAGGATGCAGTTCTGGCTCTT
TCACGACATCCGTCTCCTGACTGTATTTCTTCTGCACGTGGCGCTTCGGG
GCGAGAACCGGTAGACTTTTGTGGAGGGTACCATCCTATATACGCTGCCA
GTCATGATGGGTTTGTATTCGTGCCACCAGTGCCGCAGCAAGTGATAGAT
GGGCTGGAAGGTTTGCGCGTTAATGAGCTGGGAGCCGAAAATGTTGTGAT
TCACCTGATGCAGAACGCTGGACGCAATGTAGTGAACCCGTGTGAGCGAA
TACACCTATTCCACCAACATTGCGGCAACGAGAGGGCTTCGAGCGCGAAG
AAGAGAATTTCAGATCCGAAATGGCGACGGTTATTCGGCTCCACAACGGA
ATGGGGGTACGGAGGAAGCTCGTGGATACATAAAGGACTGAGATCAAGAT
ATGGTAATGTAGATTGCATGGCATTAGGATTGGTGATGGAGAAAAAGAAA
GGTTTACATTAA
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Coding sequence (CDS) from alignment at NODE_328_length_29789_cov_4.262846:12727..13688-

>Gcaud3036.t1 ID=Gcaud3036.t1|Name=Gcaud3036.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=774bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:12727..13688- (Gracilaria caudata M_176_S67 male)
ATGCTACAAGTCACTCAGTTCTGTCGCTACTCAAACGCTCGACAAAAGGA
ATTACATCTTGTGGCGTTTCGCAACACCAATCTTGGATTCAAACAGTATC
ACCGTCTGTGTGAACCGCAGTGCACACCTATATATTCGAGGAGCACCAGC
GTGAGTTTTCGTAACGTGAAAGATGGGGTGACATATCGGGATCTTTTTCA
GGAGGCGAACAAGTTCGTTGGGTCGGTCGTGGTGATTGCCAACGCTGATA
TCTACTTTGACCATACCATTTACTGTGCGGGATTTATCGACAAGGATGCA
GTTCTGGCTCTTTCACGACATCCGTCTCCTGACTGTATTTCTTCTGCACG
TGGCGCTTCGGGGCGAGAACCGGTAGACTTTTGTGGAGGGTACCATCCTA
TATACGCTGCCAGTCATGATGGGTTTGTATTCGTGCCACCAGTGCCGCAG
CAAGTGATAGATGGGCTGGAAGGTTTGCGCGTTAATGAGCTGGGAGCCGA
AAATGTTGTGATTCACCTGATGCAGAACGCTGGACGCAATGTAGTGAACC
CGTGTGAGCGAATACACCTATTCCACCAACATTGCGGCAACGAGAGGGCT
TCGAGCGCGAAGAAGAGAATTTCAGATCCGAAATGGCGACGGTTATTCGG
CTCCACAACGGAATGGGGGTACGGAGGAAGCTCGTGGATACATAAAGGAC
TGAGATCAAGATATGGTAATGTAGATTGCATGGCATTAGGATTGGTGATG
GAGAAAAAGAAAGGTTTACATTAA
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