Gcaud3034.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3034.t1
Unique NameGcaud3034.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_328_length_29789_cov_4.262846contigNODE_328_length_29789_cov_4.262846:7847..8827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3034Gcaud3034Gracilaria caudata M_176_S67 malegeneNODE_328_length_29789_cov_4.262846 7847..8827 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3034.t1.stop1Gcaud3034.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_328_length_29789_cov_4.262846 7847..7849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3034.t1.CDS1Gcaud3034.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_328_length_29789_cov_4.262846 7847..8827 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3034.t1.exon1Gcaud3034.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_328_length_29789_cov_4.262846 7847..8827 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3034.t1.start1Gcaud3034.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_328_length_29789_cov_4.262846 8825..8827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3034.t1Gcaud3034.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_328_length_29789_cov_4.262846 7847..8827 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3034.t1 ID=Gcaud3034.t1|Name=Gcaud3034.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=327bp
MPPYLFALPSVLPCIFKRQPYTPIMSSALPTGITRKRIPLMTKDLVTITN
PEVLRKVAVSPDILRPGEVQLPWLLRKFLSATKVYYADEDRWFISLDGDD
KNNRLERRKVVEGLVAKGFTSERVDKLTEAVKGDGDVVHVAAEVAKAIGD
LVLPLGEGETIPQEVAEASFLSAKELPIVYNPFKFLPALSENRKVQAYLR
SVLGEKDELVDFLHHLGSGAQGMGKALMTMRGEMETTDMRVHFCNNPVMS
RGVLRVPARETTVDGIFPEDAPLTPSSLIVMDIMGCAKMTMDDSFLFGMG
IEKRRCPFRDLFYETTTEIHKRMRSE*
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spliced messenger RNA

>Gcaud3034.t1 ID=Gcaud3034.t1|Name=Gcaud3034.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=981bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:7847..8827- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCCATACTTGTTCGCGTTGCCATCCGTTTTACCGTGTATATTCAA
GCGTCAGCCATACACTCCCATAATGTCGAGCGCGCTTCCTACAGGAATCA
CGCGCAAGCGCATCCCGCTTATGACCAAGGATCTGGTGACCATCACGAAC
CCTGAAGTGTTGAGAAAGGTAGCCGTTAGCCCGGACATCCTCCGACCGGG
AGAGGTGCAGCTCCCTTGGTTGCTCCGCAAATTCCTTAGTGCTACCAAAG
TGTACTACGCTGATGAAGACCGTTGGTTCATCTCGCTCGATGGCGACGAT
AAAAATAACCGCCTCGAGCGGCGCAAGGTAGTAGAAGGTCTCGTTGCCAA
AGGCTTCACTTCCGAACGCGTAGACAAACTTACCGAAGCTGTGAAAGGCG
ACGGTGACGTTGTACACGTTGCCGCTGAAGTGGCAAAAGCCATTGGAGAC
CTGGTGCTGCCGTTGGGCGAGGGGGAGACGATTCCTCAGGAAGTGGCGGA
GGCCTCTTTCTTGTCCGCAAAGGAGCTTCCAATCGTGTACAACCCGTTCA
AGTTTTTGCCAGCTCTCTCGGAAAATCGCAAGGTGCAAGCGTATCTGCGG
TCGGTGCTCGGCGAGAAAGATGAGCTTGTGGACTTCTTGCACCATTTGGG
CTCAGGCGCGCAGGGTATGGGCAAGGCGTTGATGACAATGCGCGGTGAAA
TGGAGACGACAGATATGCGCGTTCATTTCTGCAACAATCCGGTGATGTCC
AGAGGCGTGTTGAGGGTGCCGGCTAGGGAGACTACTGTGGACGGCATTTT
CCCAGAAGATGCTCCGCTGACTCCGTCATCTTTGATAGTAATGGACATCA
TGGGCTGCGCGAAGATGACAATGGACGACAGTTTTCTGTTTGGCATGGGC
ATTGAGAAACGACGATGCCCTTTCAGAGACTTGTTCTATGAAACCACGAC
TGAGATCCACAAAAGGATGCGGAGCGAGTAA
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protein sequence of Gcaud3034.t1

>Gcaud3034.t1 ID=Gcaud3034.t1|Name=Gcaud3034.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=327bp
MPPYLFALPSVLPCIFKRQPYTPIMSSALPTGITRKRIPLMTKDLVTITN
PEVLRKVAVSPDILRPGEVQLPWLLRKFLSATKVYYADEDRWFISLDGDD
KNNRLERRKVVEGLVAKGFTSERVDKLTEAVKGDGDVVHVAAEVAKAIGD
LVLPLGEGETIPQEVAEASFLSAKELPIVYNPFKFLPALSENRKVQAYLR
SVLGEKDELVDFLHHLGSGAQGMGKALMTMRGEMETTDMRVHFCNNPVMS
RGVLRVPARETTVDGIFPEDAPLTPSSLIVMDIMGCAKMTMDDSFLFGMG
IEKRRCPFRDLFYETTTEIHKRMRSE*
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mRNA from alignment at NODE_328_length_29789_cov_4.262846:7847..8827-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3034.t1 ID=Gcaud3034.t1|Name=Gcaud3034.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=981bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:7847..8827- (Gracilaria caudata M_176_S67 male)
ATGCCCCCATACTTGTTCGCGTTGCCATCCGTTTTACCGTGTATATTCAA
GCGTCAGCCATACACTCCCATAATGTCGAGCGCGCTTCCTACAGGAATCA
CGCGCAAGCGCATCCCGCTTATGACCAAGGATCTGGTGACCATCACGAAC
CCTGAAGTGTTGAGAAAGGTAGCCGTTAGCCCGGACATCCTCCGACCGGG
AGAGGTGCAGCTCCCTTGGTTGCTCCGCAAATTCCTTAGTGCTACCAAAG
TGTACTACGCTGATGAAGACCGTTGGTTCATCTCGCTCGATGGCGACGAT
AAAAATAACCGCCTCGAGCGGCGCAAGGTAGTAGAAGGTCTCGTTGCCAA
AGGCTTCACTTCCGAACGCGTAGACAAACTTACCGAAGCTGTGAAAGGCG
ACGGTGACGTTGTACACGTTGCCGCTGAAGTGGCAAAAGCCATTGGAGAC
CTGGTGCTGCCGTTGGGCGAGGGGGAGACGATTCCTCAGGAAGTGGCGGA
GGCCTCTTTCTTGTCCGCAAAGGAGCTTCCAATCGTGTACAACCCGTTCA
AGTTTTTGCCAGCTCTCTCGGAAAATCGCAAGGTGCAAGCGTATCTGCGG
TCGGTGCTCGGCGAGAAAGATGAGCTTGTGGACTTCTTGCACCATTTGGG
CTCAGGCGCGCAGGGTATGGGCAAGGCGTTGATGACAATGCGCGGTGAAA
TGGAGACGACAGATATGCGCGTTCATTTCTGCAACAATCCGGTGATGTCC
AGAGGCGTGTTGAGGGTGCCGGCTAGGGAGACTACTGTGGACGGCATTTT
CCCAGAAGATGCTCCGCTGACTCCGTCATCTTTGATAGTAATGGACATCA
TGGGCTGCGCGAAGATGACAATGGACGACAGTTTTCTGTTTGGCATGGGC
ATTGAGAAACGACGATGCCCTTTCAGAGACTTGTTCTATGAAACCACGAC
TGAGATCCACAAAAGGATGCGGAGCGAGTAA
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Coding sequence (CDS) from alignment at NODE_328_length_29789_cov_4.262846:7847..8827-

>Gcaud3034.t1 ID=Gcaud3034.t1|Name=Gcaud3034.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=981bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:7847..8827- (Gracilaria caudata M_176_S67 male)
ATGCCCCCATACTTGTTCGCGTTGCCATCCGTTTTACCGTGTATATTCAA
GCGTCAGCCATACACTCCCATAATGTCGAGCGCGCTTCCTACAGGAATCA
CGCGCAAGCGCATCCCGCTTATGACCAAGGATCTGGTGACCATCACGAAC
CCTGAAGTGTTGAGAAAGGTAGCCGTTAGCCCGGACATCCTCCGACCGGG
AGAGGTGCAGCTCCCTTGGTTGCTCCGCAAATTCCTTAGTGCTACCAAAG
TGTACTACGCTGATGAAGACCGTTGGTTCATCTCGCTCGATGGCGACGAT
AAAAATAACCGCCTCGAGCGGCGCAAGGTAGTAGAAGGTCTCGTTGCCAA
AGGCTTCACTTCCGAACGCGTAGACAAACTTACCGAAGCTGTGAAAGGCG
ACGGTGACGTTGTACACGTTGCCGCTGAAGTGGCAAAAGCCATTGGAGAC
CTGGTGCTGCCGTTGGGCGAGGGGGAGACGATTCCTCAGGAAGTGGCGGA
GGCCTCTTTCTTGTCCGCAAAGGAGCTTCCAATCGTGTACAACCCGTTCA
AGTTTTTGCCAGCTCTCTCGGAAAATCGCAAGGTGCAAGCGTATCTGCGG
TCGGTGCTCGGCGAGAAAGATGAGCTTGTGGACTTCTTGCACCATTTGGG
CTCAGGCGCGCAGGGTATGGGCAAGGCGTTGATGACAATGCGCGGTGAAA
TGGAGACGACAGATATGCGCGTTCATTTCTGCAACAATCCGGTGATGTCC
AGAGGCGTGTTGAGGGTGCCGGCTAGGGAGACTACTGTGGACGGCATTTT
CCCAGAAGATGCTCCGCTGACTCCGTCATCTTTGATAGTAATGGACATCA
TGGGCTGCGCGAAGATGACAATGGACGACAGTTTTCTGTTTGGCATGGGC
ATTGAGAAACGACGATGCCCTTTCAGAGACTTGTTCTATGAAACCACGAC
TGAGATCCACAAAAGGATGCGGAGCGAGTAA
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