Gcaud3032.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3032.t1
Unique Name	Gcaud3032.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	476

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_328_length_29789_cov_4.262846	contig	NODE_328_length_29789_cov_4.262846:3108..4535 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	232348.ADXL01000034_gene1377
Preferred name	accC
PFAMs	Biotin_carb_C,Biotin_carb_N,CPSase_L_D2
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00040,RC00253,RC00367
KEGG ko	ko:K01961
KEGG Reaction	R00742,R04385
KEGG Pathway	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG Module	M00082,M00376
Evalue	1.35e-210
EggNOG OGs	COG0439@1\|root,COG0439@2\|Bacteria,1G1M0@1117\|Cyanobacteria,1GYGC@1129\|Synechococcus
EC	6.3.4.14,6.4.1.2
Description	Biotin carboxylase
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3032	Gcaud3032	Gracilaria caudata M_176_S67 male	gene	NODE_328_length_29789_cov_4.262846 3108..4535 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3032.t1.start1	Gcaud3032.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_328_length_29789_cov_4.262846 3108..3110 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3032.t1.CDS1	Gcaud3032.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_328_length_29789_cov_4.262846 3108..4535 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3032.t1.exon1	Gcaud3032.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_328_length_29789_cov_4.262846 3108..4535 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3032.t1.stop1	Gcaud3032.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_328_length_29789_cov_4.262846 4533..4535 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3032.t1	Gcaud3032.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_328_length_29789_cov_4.262846 3108..4535 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_328_length_29789_cov_4.262846:3108..4535+
coding sequence from alignment at NODE_328_length_29789_cov_4.262846:3108..4535+

mRNA sequence

>Gcaud3032.t1 ID=Gcaud3032.t1|Name=Gcaud3032.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=476bp
MVTASSSSVATSATPTVAPIRKLLIANRGEIAIRIIRACAELGIFSVAVY
SQADRDALHVSLADQAICIGDAPSSSSYLCVPNILAAATVTGADAIHPGY
GFLSENAEFADICAAHGLRFVGPTAQAISKMGDKATAKATMQDAGVPCVP
GSRGVLESVEEALAVASELGFPLMLKATAGGGGRGIKIVNAEEELAPAFK
TCSAEAEAAFSDGGLYMERYVQAPRHVEIQVLADNYGNCIHLGERDCSVQ
RRNQKLIEEAPSPALNEQLRQQMGEAAVNAAKAIGYRGAGTVEFLLDRNG
SFYFMEMNTRIQVEHPVTEAITGVDLIQQQIRVAEGEKLALEQKDIELRG
HAIEARINAEDPAHNFRPMPGKVSGFLPAGGIGVRWDGQVFTGWRIPPNY
DSLLGKLIVWAPTRAEAIRRLKRALSETAVQGVPTTIEFHLQVVQNETFI
KGEHIYTDFIESEGLLDKLREQKDE*

spliced messenger RNA

>Gcaud3032.t1 ID=Gcaud3032.t1|Name=Gcaud3032.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:3108..4535+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACCGCGTCTTCCTCCTCCGTCGCCACGTCGGCCACGCCCACAGT
CGCTCCCATCCGCAAGTTACTCATCGCCAATCGCGGCGAGATCGCCATTC
GTATCATCCGCGCCTGCGCCGAGCTCGGCATTTTCTCCGTCGCCGTGTAT
TCGCAGGCCGATCGAGACGCGCTTCATGTGTCGTTGGCCGATCAGGCCAT
TTGCATTGGCGATGCGCCGTCGTCGTCGTCGTATCTGTGCGTGCCCAACA
TTCTGGCCGCCGCCACTGTCACTGGTGCGGATGCCATTCATCCGGGCTAC
GGTTTTCTGTCCGAGAACGCCGAGTTTGCAGACATTTGCGCGGCGCATGG
CTTGCGTTTTGTGGGGCCTACCGCGCAGGCCATTTCCAAGATGGGCGACA
AGGCTACTGCCAAGGCTACCATGCAGGATGCGGGCGTACCTTGTGTGCCG
GGCAGTCGCGGTGTGCTGGAGTCGGTGGAAGAAGCGCTCGCCGTGGCGAG
CGAGTTGGGCTTCCCGCTCATGCTCAAGGCCACGGCGGGTGGCGGCGGTC
GTGGTATCAAGATCGTCAACGCGGAAGAGGAGCTAGCGCCCGCGTTCAAG
ACGTGCTCGGCGGAGGCGGAGGCGGCGTTTTCCGACGGCGGCCTATACAT
GGAACGGTACGTGCAAGCGCCCAGACATGTGGAGATTCAGGTTTTGGCCG
ATAACTATGGCAACTGCATACATCTCGGTGAACGTGATTGCTCGGTGCAG
CGAAGAAACCAGAAACTGATTGAAGAGGCACCGTCGCCGGCGTTGAACGA
ACAACTGCGACAGCAGATGGGCGAGGCGGCGGTGAACGCGGCCAAGGCGA
TTGGATATCGTGGCGCTGGCACGGTGGAGTTTCTGTTGGACCGCAACGGA
AGCTTTTATTTCATGGAGATGAACACTCGCATTCAGGTGGAACATCCCGT
GACGGAGGCGATCACGGGTGTGGATCTGATCCAACAGCAAATCCGAGTGG
CGGAGGGTGAGAAGCTGGCGTTGGAGCAGAAGGACATTGAGCTGCGTGGT
CACGCGATCGAGGCGCGTATCAATGCGGAGGACCCTGCGCACAACTTCCG
TCCGATGCCTGGAAAGGTGAGCGGCTTCCTGCCGGCGGGCGGGATTGGAG
TGAGGTGGGACGGGCAGGTGTTCACTGGGTGGCGCATCCCGCCCAACTAC
GACAGCCTGCTGGGCAAGCTGATTGTGTGGGCGCCGACGAGGGCGGAGGC
GATTCGGCGGCTGAAGAGGGCGCTGAGCGAGACGGCGGTGCAGGGCGTGC
CGACCACGATCGAGTTCCACCTGCAGGTGGTGCAGAACGAGACGTTCATC
AAGGGCGAGCACATCTACACGGACTTCATAGAGAGCGAGGGCCTTCTGGA
CAAGCTGCGCGAGCAAAAGGACGAGTGA

protein sequence of Gcaud3032.t1

>Gcaud3032.t1 ID=Gcaud3032.t1|Name=Gcaud3032.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=476bp
MVTASSSSVATSATPTVAPIRKLLIANRGEIAIRIIRACAELGIFSVAVY
SQADRDALHVSLADQAICIGDAPSSSSYLCVPNILAAATVTGADAIHPGY
GFLSENAEFADICAAHGLRFVGPTAQAISKMGDKATAKATMQDAGVPCVP
GSRGVLESVEEALAVASELGFPLMLKATAGGGGRGIKIVNAEEELAPAFK
TCSAEAEAAFSDGGLYMERYVQAPRHVEIQVLADNYGNCIHLGERDCSVQ
RRNQKLIEEAPSPALNEQLRQQMGEAAVNAAKAIGYRGAGTVEFLLDRNG
SFYFMEMNTRIQVEHPVTEAITGVDLIQQQIRVAEGEKLALEQKDIELRG
HAIEARINAEDPAHNFRPMPGKVSGFLPAGGIGVRWDGQVFTGWRIPPNY
DSLLGKLIVWAPTRAEAIRRLKRALSETAVQGVPTTIEFHLQVVQNETFI
KGEHIYTDFIESEGLLDKLREQKDE*

mRNA from alignment at NODE_328_length_29789_cov_4.262846:3108..4535+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3032.t1 ID=Gcaud3032.t1|Name=Gcaud3032.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:3108..4535+ (Gracilaria caudata M_176_S67 male)
ATGGTCACCGCGTCTTCCTCCTCCGTCGCCACGTCGGCCACGCCCACAGT
CGCTCCCATCCGCAAGTTACTCATCGCCAATCGCGGCGAGATCGCCATTC
GTATCATCCGCGCCTGCGCCGAGCTCGGCATTTTCTCCGTCGCCGTGTAT
TCGCAGGCCGATCGAGACGCGCTTCATGTGTCGTTGGCCGATCAGGCCAT
TTGCATTGGCGATGCGCCGTCGTCGTCGTCGTATCTGTGCGTGCCCAACA
TTCTGGCCGCCGCCACTGTCACTGGTGCGGATGCCATTCATCCGGGCTAC
GGTTTTCTGTCCGAGAACGCCGAGTTTGCAGACATTTGCGCGGCGCATGG
CTTGCGTTTTGTGGGGCCTACCGCGCAGGCCATTTCCAAGATGGGCGACA
AGGCTACTGCCAAGGCTACCATGCAGGATGCGGGCGTACCTTGTGTGCCG
GGCAGTCGCGGTGTGCTGGAGTCGGTGGAAGAAGCGCTCGCCGTGGCGAG
CGAGTTGGGCTTCCCGCTCATGCTCAAGGCCACGGCGGGTGGCGGCGGTC
GTGGTATCAAGATCGTCAACGCGGAAGAGGAGCTAGCGCCCGCGTTCAAG
ACGTGCTCGGCGGAGGCGGAGGCGGCGTTTTCCGACGGCGGCCTATACAT
GGAACGGTACGTGCAAGCGCCCAGACATGTGGAGATTCAGGTTTTGGCCG
ATAACTATGGCAACTGCATACATCTCGGTGAACGTGATTGCTCGGTGCAG
CGAAGAAACCAGAAACTGATTGAAGAGGCACCGTCGCCGGCGTTGAACGA
ACAACTGCGACAGCAGATGGGCGAGGCGGCGGTGAACGCGGCCAAGGCGA
TTGGATATCGTGGCGCTGGCACGGTGGAGTTTCTGTTGGACCGCAACGGA
AGCTTTTATTTCATGGAGATGAACACTCGCATTCAGGTGGAACATCCCGT
GACGGAGGCGATCACGGGTGTGGATCTGATCCAACAGCAAATCCGAGTGG
CGGAGGGTGAGAAGCTGGCGTTGGAGCAGAAGGACATTGAGCTGCGTGGT
CACGCGATCGAGGCGCGTATCAATGCGGAGGACCCTGCGCACAACTTCCG
TCCGATGCCTGGAAAGGTGAGCGGCTTCCTGCCGGCGGGCGGGATTGGAG
TGAGGTGGGACGGGCAGGTGTTCACTGGGTGGCGCATCCCGCCCAACTAC
GACAGCCTGCTGGGCAAGCTGATTGTGTGGGCGCCGACGAGGGCGGAGGC
GATTCGGCGGCTGAAGAGGGCGCTGAGCGAGACGGCGGTGCAGGGCGTGC
CGACCACGATCGAGTTCCACCTGCAGGTGGTGCAGAACGAGACGTTCATC
AAGGGCGAGCACATCTACACGGACTTCATAGAGAGCGAGGGCCTTCTGGA
CAAGCTGCGCGAGCAAAAGGACGAGTGA

Coding sequence (CDS) from alignment at NODE_328_length_29789_cov_4.262846:3108..4535+

>Gcaud3032.t1 ID=Gcaud3032.t1|Name=Gcaud3032.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1428bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:3108..4535+ (Gracilaria caudata M_176_S67 male)
ATGGTCACCGCGTCTTCCTCCTCCGTCGCCACGTCGGCCACGCCCACAGT
CGCTCCCATCCGCAAGTTACTCATCGCCAATCGCGGCGAGATCGCCATTC
GTATCATCCGCGCCTGCGCCGAGCTCGGCATTTTCTCCGTCGCCGTGTAT
TCGCAGGCCGATCGAGACGCGCTTCATGTGTCGTTGGCCGATCAGGCCAT
TTGCATTGGCGATGCGCCGTCGTCGTCGTCGTATCTGTGCGTGCCCAACA
TTCTGGCCGCCGCCACTGTCACTGGTGCGGATGCCATTCATCCGGGCTAC
GGTTTTCTGTCCGAGAACGCCGAGTTTGCAGACATTTGCGCGGCGCATGG
CTTGCGTTTTGTGGGGCCTACCGCGCAGGCCATTTCCAAGATGGGCGACA
AGGCTACTGCCAAGGCTACCATGCAGGATGCGGGCGTACCTTGTGTGCCG
GGCAGTCGCGGTGTGCTGGAGTCGGTGGAAGAAGCGCTCGCCGTGGCGAG
CGAGTTGGGCTTCCCGCTCATGCTCAAGGCCACGGCGGGTGGCGGCGGTC
GTGGTATCAAGATCGTCAACGCGGAAGAGGAGCTAGCGCCCGCGTTCAAG
ACGTGCTCGGCGGAGGCGGAGGCGGCGTTTTCCGACGGCGGCCTATACAT
GGAACGGTACGTGCAAGCGCCCAGACATGTGGAGATTCAGGTTTTGGCCG
ATAACTATGGCAACTGCATACATCTCGGTGAACGTGATTGCTCGGTGCAG
CGAAGAAACCAGAAACTGATTGAAGAGGCACCGTCGCCGGCGTTGAACGA
ACAACTGCGACAGCAGATGGGCGAGGCGGCGGTGAACGCGGCCAAGGCGA
TTGGATATCGTGGCGCTGGCACGGTGGAGTTTCTGTTGGACCGCAACGGA
AGCTTTTATTTCATGGAGATGAACACTCGCATTCAGGTGGAACATCCCGT
GACGGAGGCGATCACGGGTGTGGATCTGATCCAACAGCAAATCCGAGTGG
CGGAGGGTGAGAAGCTGGCGTTGGAGCAGAAGGACATTGAGCTGCGTGGT
CACGCGATCGAGGCGCGTATCAATGCGGAGGACCCTGCGCACAACTTCCG
TCCGATGCCTGGAAAGGTGAGCGGCTTCCTGCCGGCGGGCGGGATTGGAG
TGAGGTGGGACGGGCAGGTGTTCACTGGGTGGCGCATCCCGCCCAACTAC
GACAGCCTGCTGGGCAAGCTGATTGTGTGGGCGCCGACGAGGGCGGAGGC
GATTCGGCGGCTGAAGAGGGCGCTGAGCGAGACGGCGGTGCAGGGCGTGC
CGACCACGATCGAGTTCCACCTGCAGGTGGTGCAGAACGAGACGTTCATC
AAGGGCGAGCACATCTACACGGACTTCATAGAGAGCGAGGGCCTTCTGGA
CAAGCTGCGCGAGCAAAAGGACGAGTGA