Gcaud3030.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3030.t1
Unique Name	Gcaud3030.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	98

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_250_length_34171_cov_4.548005	contig	NODE_250_length_34171_cov_4.548005:30486..33536 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3030	Gcaud3030	Gracilaria caudata M_176_S67 male	gene	NODE_250_length_34171_cov_4.548005 30486..33536 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3030.t1	Gcaud3030.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_250_length_34171_cov_4.548005 30486..33536 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3030.t1.start1	Gcaud3030.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_250_length_34171_cov_4.548005 30486..30488 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3030.t1.CDS1	Gcaud3030.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_250_length_34171_cov_4.548005 30486..30571 +
Gcaud3030.t1.CDS2	Gcaud3030.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_250_length_34171_cov_4.548005 30703..30746 +
Gcaud3030.t1.CDS3	Gcaud3030.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_250_length_34171_cov_4.548005 30949..31010 +
Gcaud3030.t1.CDS4	Gcaud3030.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_250_length_34171_cov_4.548005 33369..33426 +
Gcaud3030.t1.CDS5	Gcaud3030.t1.CDS5	Gracilaria caudata M_176_S67 male	CDS	NODE_250_length_34171_cov_4.548005 33493..33536 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3030.t1.exon1	Gcaud3030.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_250_length_34171_cov_4.548005 30486..30571 +
Gcaud3030.t1.exon2	Gcaud3030.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_250_length_34171_cov_4.548005 30703..30746 +
Gcaud3030.t1.exon3	Gcaud3030.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_250_length_34171_cov_4.548005 30949..31010 +
Gcaud3030.t1.exon4	Gcaud3030.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_250_length_34171_cov_4.548005 33369..33426 +
Gcaud3030.t1.exon5	Gcaud3030.t1.exon5	Gracilaria caudata M_176_S67 male	exon	NODE_250_length_34171_cov_4.548005 33493..33536 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3030.t1.intron1	Gcaud3030.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_250_length_34171_cov_4.548005 30572..30702 +
Gcaud3030.t1.intron2	Gcaud3030.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_250_length_34171_cov_4.548005 30747..30948 +
Gcaud3030.t1.intron3	Gcaud3030.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_250_length_34171_cov_4.548005 31011..33368 +
Gcaud3030.t1.intron4	Gcaud3030.t1.intron4	Gracilaria caudata M_176_S67 male	intron	NODE_250_length_34171_cov_4.548005 33427..33492 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3030.t1.stop1	Gcaud3030.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_250_length_34171_cov_4.548005 33534..33536 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_250_length_34171_cov_4.548005:30486..33536+
coding sequence from alignment at NODE_250_length_34171_cov_4.548005:30486..33536+

mRNA sequence

>Gcaud3030.t1 ID=Gcaud3030.t1|Name=Gcaud3030.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=98bp
MQVSICVNSTTPIGTRWPLLDDVIMVPMSGALGNQSPLHTTQKDDSFVDL
STFCYKHLVDTAKSPVSEAAKSNTHSADYSFSTYSFSSTTIPTPRKI*

spliced messenger RNA

>Gcaud3030.t1 ID=Gcaud3030.t1|Name=Gcaud3030.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=294bp|location=Sequence derived from alignment at NODE_250_length_34171_cov_4.548005:30486..33536+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTGTCAATCTGCGTCAATTCTACAACGCCCATAGGCACTCGATG
GCCCCTTCTAGACGACGTCATCATGGTACCAATGAGCGGTGCCTTAGGGA
ATCAGTCACCTTTGCATACTACACAAAAAGATGATTCTTTTGTTGACCTC
TCCACTTTCTGTTACAAACACCTTGTTGACACAGCTAAGTCTCCTGTTTC
CGAAGCAGCTAAAAGTAACACACACTCGGCTGACTATTCCTTCTCTACCT
ACAGCTTCAGTAGCACGACGATACCGACACCACGCAAAATTTAA

protein sequence of Gcaud3030.t1

>Gcaud3030.t1 ID=Gcaud3030.t1|Name=Gcaud3030.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=98bp
MQVSICVNSTTPIGTRWPLLDDVIMVPMSGALGNQSPLHTTQKDDSFVDL
STFCYKHLVDTAKSPVSEAAKSNTHSADYSFSTYSFSSTTIPTPRKI*

mRNA from alignment at NODE_250_length_34171_cov_4.548005:30486..33536+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3030.t1 ID=Gcaud3030.t1|Name=Gcaud3030.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3051bp|location=Sequence derived from alignment at NODE_250_length_34171_cov_4.548005:30486..33536+ (Gracilaria caudata M_176_S67 male)
ATGCAGGTGTCAATCTGCGTCAATTCTACAACGCCCATAGGCACTCGATG
GCCCCTTCTAGACGACGTCATCATGGTACCAATGAGGTAAGGCGGTATCG
ATGAGCAATAGCCAGCAACTAAAGGTTGCGAGAAATTTTGCGCCGCACTC
TTTTCGCTTGAACAAGGCCAAGATACCTCAAAATCTGCACATGTTACCTG
CGTGTTTCCTCACAAAGCGGTGCCTTAGGGAATCAGTCACCTTTGCATAC
TACACAAAAAGGTATCTTTGCATCCTATAAGCTTGTCTTCGGGTATGCTT
TCATTTCAGTGTTAGCGGCGCGTTAAGTTTCATTCCTGCGTCAAGATAAC
TTTTCTTCCTTTGCGAATCCTTCCCTTTTGGAAAGGCTGCGAACTATTTA
ATGCTCGTTGAATGTCATAACCGGGTTGTCAGTAACACATGTGTTTCCTT
CTTTTGGCTAAAGATGATTCTTTTGTTGACCTCTCCACTTTCTGTTACAA
ACACCTTGTTGACACAGCTAAGTCTGTTCTCATCCAAATCCGTCCGTACG
AGTCAACTCGTATATCGTGTTCCTTCCGGGGAACAATGCATTGGCTAAGA
GAACGAATCAATACAAGTAACAAGCCCATGGTTAGAAAGATACCTCTTTT
TACTTTCTTGTCTATGTTCGTTCGGCTCGTACACTCTCGCACTGCAGTTG
ATTTCATTGCTCGCGAATAATATCCTAACTTCCCGGTCCATCGCCACTCG
AAAGCCATGCCATCTTGAGTCTCCTGAACGTTCAACGCCATGTGGACCAG
GTTGACACAACAATTGTTGGAGGGAGGCTGAAAGGATTTCTTTGTGAAAA
AGGCTCGTGAGCGGATGTTGTCGCCAGGGTCGTGTTCATCTTACTTTTGT
CGTCGCTCCCAATCTGGTTGTTCTTGCGTCGTAATATATCGCCGTTTACC
ATAAATCAAGCCGCCAAGGCATTTCAAGCTGATCTTCCATCAGTATACCG
AGCAACATATTATTGATTGCCAAAACTACACTGTTCTGTATTCGTAGCTG
ACATTTGTTCTTGTCGTTCTACACAACTGAAGCAAGAGCATGTGGTTGTT
AGAGTGCTTTTGTGGAACACCATAGCTTGAAGACCCGGCGCTCTCACGAA
TAGTCGGAGACTGATATGTTAGGCACCTTGTAGCGTTCATCGATTGGGTC
AAGCAGTGATAGAATGTCTCCAGCAATTTCATTTCAAACAAGAGCCCAAA
CAAAGCACAGCTGGACAGCAATTGCATCATGCACATGATGTCGACCACTC
GGAATTGGGCTCTTTTTCGACAGGAAGTCTACTCAGTATAAGATGGATGT
CTTTTTGTAATTCGAACTAAACGCGGTACTTTCGTCAAGATTGGCTTTTG
AAAGAAAAAGGTTTGCAACCTCTGCTCTTCTTAGTTTCTGCACAGAGCTT
TATGTATGCCGTGCTGGCGGTAGAGAGGCGAAACCTGTTAGCGTTTTGAA
GTACAAACTATATATATATTATCTACGCCTGGCGTTGTCTTGCCCCGCAG
AGATAAAAGCTCATTTCAACAAAGGGTGTATTTATATTAGCCTGTGTGCC
ACTCCATGTAGTCCAAACTGTTTTCGAAATCTTGTTGAGGTTGAGGATGG
AATAAAGTGAACTCTCTATATTAAAACCGAAGAAAAAGTGGACAGCGCTC
ATCGTCCCCATGTCGTCTTGGACCCTTTTGCAAGGCAAGGCAGAGACACA
TATGGGGGATTGACTTTCTCCTTTCTAGATATTGTGCGAGGTTACGAACC
CAAGGGCTAACAAACCAAGATTGTTGGGAAGGAAAATATTCGAAGTACAA
GGGTAAACCAACACTTAGCCGGGCTTCAATCCATGTCTTTTGTCCAACCC
GAGTGGCTATAAGTTAAAATCTTTCCAAATCGTTTTCAGTTCAACATTCA
TCCACAAGAAAATGTTGAGGGTACCATGGTTGCGCGCACTTTTTGGGATC
ACTTCTCTTTTTCATGCCAGTTAATATGAACGTAGCGCATCTTGTTTCCT
TCTTCCCAGCCAAGTTCGCCGTAGATATGCAATAAGTAGTAGACTGATTA
TTATTTCCAGTATCGTGTTCGACCATTTCGGACTCTTCTTCAGCAAAGCA
AAAGGCAAGACGAGATTGAGCATTTTGTTCTTGAAAGTACCAAATTCCAG
TTTTGAAACAAAAACGATATGCTTGCTCTCCAGTTCCAAGTACTAAATCA
CAGCAATCGCCAAGAAGTGCGTCCCAAAAAAGTTCAAGATCCAATGTTCC
AAAAAGTCCAGGAAGAAAACAGAAGAGATAAAAAGAGAAGAAAAGCGCAA
ACAGAAAAAGagcaggaaaaagttttacaacggtgacaccgaaactgttt
tcacaacctgcGAGACGGGGAGAAGGAAGGGGAGGAAagcagggaaattt
ttacaacggtggcgccgaaactgttttcacaacctgcATAACAGAGAGAA
ACGGAGAGTTAGTGGTAGGAGTGGAGGTCAGGGACAGAGGAAGTGAAAGA
TAAAGTTGGAAGGTTGTTGGTTGGTATTGGTAGCGATGAACGTCAGTTTC
TGGTGCAGCTTGGCGAGGCAGCTTTTATACCATCATTGGAGCCCGCATTT
CTGTTGACAACTCTCCCGCATTAACATTCCAGCAGAACCTTCGTGTTGCA
TTTTTTTTGGAACGGAGAGAGTGTGTGTACGCGGTGTCGGTATCGTTACA
TCAACCGTTTGTACGTGTTTGAATTATCTTCGTGAATGTTACGCTTGTCA
CTCTACCAGAACACCATAGTTTGAAATACTCAGCACTTCTTCCAGACGTA
GAGAATGAATTGTAACTGTTGCAGACATTGCAGCCTGTTTCCGAAGCAGC
TAAAAGTAACACACACTCGGCTGACTATTCCTTCTCTACCTGTACGTGAC
TCCGCCATGATGATGATGACGGCATTGCATTCAGTAACGCAAACCAGACA
CGTACAGACAGCTTCAGTAGCACGACGATACCGACACCACGCAAAATTTA
A

Coding sequence (CDS) from alignment at NODE_250_length_34171_cov_4.548005:30486..33536+

>Gcaud3030.t1 ID=Gcaud3030.t1|Name=Gcaud3030.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=294bp|location=Sequence derived from alignment at NODE_250_length_34171_cov_4.548005:30486..33536+ (Gracilaria caudata M_176_S67 male)
ATGCAGGTGTCAATCTGCGTCAATTCTACAACGCCCATAGGCACTCGATG
GCCCCTTCTAGACGACGTCATCATGGTACCAATGAGCGGTGCCTTAGGGA
ATCAGTCACCTTTGCATACTACACAAAAAGATGATTCTTTTGTTGACCTC
TCCACTTTCTGTTACAAACACCTTGTTGACACAGCTAAGTCTCCTGTTTC
CGAAGCAGCTAAAAGTAACACACACTCGGCTGACTATTCCTTCTCTACCT
ACAGCTTCAGTAGCACGACGATACCGACACCACGCAAAATTTAA