Gcaud3028.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3028.t1
Unique Name	Gcaud3028.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	222

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_250_length_34171_cov_4.548005	contig	NODE_250_length_34171_cov_4.548005:25998..26663 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	420324.KI911965_gene895
PFAMs	His_Phos_1
Max annot lvl	28211\|Alphaproteobacteria
Evalue	3.48e-27
EggNOG OGs	COG0406@1\|root,COG0406@2\|Bacteria,1RKS2@1224\|Proteobacteria,2UA1X@28211\|Alphaproteobacteria,1JSP8@119045\|Methylobacteriaceae
Description	PFAM Phosphoglycerate mutase
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3028	Gcaud3028	Gracilaria caudata M_176_S67 male	gene	NODE_250_length_34171_cov_4.548005 25998..26663 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3028.t1.start1	Gcaud3028.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_250_length_34171_cov_4.548005 25998..26000 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3028.t1.CDS1	Gcaud3028.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_250_length_34171_cov_4.548005 25998..26663 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3028.t1.exon1	Gcaud3028.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_250_length_34171_cov_4.548005 25998..26663 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3028.t1.stop1	Gcaud3028.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_250_length_34171_cov_4.548005 26661..26663 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3028.t1	Gcaud3028.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_250_length_34171_cov_4.548005 25998..26663 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_250_length_34171_cov_4.548005:25998..26663+
coding sequence from alignment at NODE_250_length_34171_cov_4.548005:25998..26663+

mRNA sequence

>Gcaud3028.t1 ID=Gcaud3028.t1|Name=Gcaud3028.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=222bp
MDRYCLEAEIGEKIAPKTIFIVRHGQSLHNAHALEAQGADLNDIRYVDSP
LTALGHQQATSIAEEVARIKPELIVTSPMVRATETCLDACRLVPSVPVVV
NQLCAERMAYSCDVGTPVSELVHKFPKLDYANIKPDCWWWSKPGTTLSVK
NSVVELRKHAPGAYIDVEPVEVLRKRINDFRRWLLLRPESRIIVFSHGVF
LTRFVGDNKRFANAEVRKIVI*

spliced messenger RNA

>Gcaud3028.t1 ID=Gcaud3028.t1|Name=Gcaud3028.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=666bp|location=Sequence derived from alignment at NODE_250_length_34171_cov_4.548005:25998..26663+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGGTATTGCTTGGAAGCCGAAATAGGGGAGAAGATTGCCCCAAA
AACTATATTCATTGTTCGTCATGGCCAGTCTCTGCACAACGCTCATGCTC
TAGAGGCTCAAGGCGCGGATCTCAACGACATTCGCTATGTTGACTCTCCT
CTTACTGCTCTTGGTCACCAACAAGCAACTTCTATTGCTGAGGAAGTCGC
GCGGATAAAACCCGAGCTCATAGTGACATCTCCCATGGTCAGAGCGACAG
AAACTTGTCTAGATGCGTGCCGATTAGTGCCAAGCGTTCCTGTAGTTGTC
AATCAATTATGTGCAGAGAGGATGGCATATAGCTGTGATGTTGGCACTCC
CGTATCAGAACTAGTACACAAATTTCCAAAGCTGGATTACGCCAACATTA
AGCCTGATTGCTGGTGGTGGAGCAAGCCGGGCACTACGCTCAGTGTTAAG
AACAGTGTGGTTGAACTTCGGAAGCACGCACCCGGAGCTTATATTGACGT
CGAACCCGTGGAAGTTCTGCGTAAGCGCATCAACGACTTTCGAAGGTGGC
TTCTTTTGCGCCCCGAATCGAGAATAATTGTTTTTTCGCACGGAGTGTTT
CTCACAAGGTTCGTCGGGGATAACAAACGGTTCGCGAATGCAGAAGTACG
AAAGATCGTAATTTGA

protein sequence of Gcaud3028.t1

>Gcaud3028.t1 ID=Gcaud3028.t1|Name=Gcaud3028.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=222bp
MDRYCLEAEIGEKIAPKTIFIVRHGQSLHNAHALEAQGADLNDIRYVDSP
LTALGHQQATSIAEEVARIKPELIVTSPMVRATETCLDACRLVPSVPVVV
NQLCAERMAYSCDVGTPVSELVHKFPKLDYANIKPDCWWWSKPGTTLSVK
NSVVELRKHAPGAYIDVEPVEVLRKRINDFRRWLLLRPESRIIVFSHGVF
LTRFVGDNKRFANAEVRKIVI*

mRNA from alignment at NODE_250_length_34171_cov_4.548005:25998..26663+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3028.t1 ID=Gcaud3028.t1|Name=Gcaud3028.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=666bp|location=Sequence derived from alignment at NODE_250_length_34171_cov_4.548005:25998..26663+ (Gracilaria caudata M_176_S67 male)
ATGGATCGGTATTGCTTGGAAGCCGAAATAGGGGAGAAGATTGCCCCAAA
AACTATATTCATTGTTCGTCATGGCCAGTCTCTGCACAACGCTCATGCTC
TAGAGGCTCAAGGCGCGGATCTCAACGACATTCGCTATGTTGACTCTCCT
CTTACTGCTCTTGGTCACCAACAAGCAACTTCTATTGCTGAGGAAGTCGC
GCGGATAAAACCCGAGCTCATAGTGACATCTCCCATGGTCAGAGCGACAG
AAACTTGTCTAGATGCGTGCCGATTAGTGCCAAGCGTTCCTGTAGTTGTC
AATCAATTATGTGCAGAGAGGATGGCATATAGCTGTGATGTTGGCACTCC
CGTATCAGAACTAGTACACAAATTTCCAAAGCTGGATTACGCCAACATTA
AGCCTGATTGCTGGTGGTGGAGCAAGCCGGGCACTACGCTCAGTGTTAAG
AACAGTGTGGTTGAACTTCGGAAGCACGCACCCGGAGCTTATATTGACGT
CGAACCCGTGGAAGTTCTGCGTAAGCGCATCAACGACTTTCGAAGGTGGC
TTCTTTTGCGCCCCGAATCGAGAATAATTGTTTTTTCGCACGGAGTGTTT
CTCACAAGGTTCGTCGGGGATAACAAACGGTTCGCGAATGCAGAAGTACG
AAAGATCGTAATTTGA

Coding sequence (CDS) from alignment at NODE_250_length_34171_cov_4.548005:25998..26663+

>Gcaud3028.t1 ID=Gcaud3028.t1|Name=Gcaud3028.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=666bp|location=Sequence derived from alignment at NODE_250_length_34171_cov_4.548005:25998..26663+ (Gracilaria caudata M_176_S67 male)
ATGGATCGGTATTGCTTGGAAGCCGAAATAGGGGAGAAGATTGCCCCAAA
AACTATATTCATTGTTCGTCATGGCCAGTCTCTGCACAACGCTCATGCTC
TAGAGGCTCAAGGCGCGGATCTCAACGACATTCGCTATGTTGACTCTCCT
CTTACTGCTCTTGGTCACCAACAAGCAACTTCTATTGCTGAGGAAGTCGC
GCGGATAAAACCCGAGCTCATAGTGACATCTCCCATGGTCAGAGCGACAG
AAACTTGTCTAGATGCGTGCCGATTAGTGCCAAGCGTTCCTGTAGTTGTC
AATCAATTATGTGCAGAGAGGATGGCATATAGCTGTGATGTTGGCACTCC
CGTATCAGAACTAGTACACAAATTTCCAAAGCTGGATTACGCCAACATTA
AGCCTGATTGCTGGTGGTGGAGCAAGCCGGGCACTACGCTCAGTGTTAAG
AACAGTGTGGTTGAACTTCGGAAGCACGCACCCGGAGCTTATATTGACGT
CGAACCCGTGGAAGTTCTGCGTAAGCGCATCAACGACTTTCGAAGGTGGC
TTCTTTTGCGCCCCGAATCGAGAATAATTGTTTTTTCGCACGGAGTGTTT
CTCACAAGGTTCGTCGGGGATAACAAACGGTTCGCGAATGCAGAAGTACG
AAAGATCGTAATTTGA