Gcaud3024.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3024.t1
Unique Name	Gcaud3024.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	581

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_250_length_34171_cov_4.548005	contig	NODE_250_length_34171_cov_4.548005:12144..13886 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1111730.ATTM01000008_gene771
Preferred name	recQ3
PFAMs	DEAD,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Max annot lvl	976\|Bacteroidetes
KEGG ko	ko:K03654
KEGG Pathway	ko03018,map03018
Evalue	1e-91
EggNOG OGs	COG0514@1\|root,COG0514@2\|Bacteria,4NG10@976\|Bacteroidetes,1HXWC@117743\|Flavobacteriia,2NTEE@237\|Flavobacterium
EC	3.6.4.12
Description	ATP-dependent DNA helicase RecQ
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3024	Gcaud3024	Gracilaria caudata M_176_S67 male	gene	NODE_250_length_34171_cov_4.548005 12144..13886 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3024.t1.start1	Gcaud3024.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_250_length_34171_cov_4.548005 12144..12146 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3024.t1.CDS1	Gcaud3024.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_250_length_34171_cov_4.548005 12144..13886 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3024.t1.exon1	Gcaud3024.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_250_length_34171_cov_4.548005 12144..13886 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3024.t1.stop1	Gcaud3024.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_250_length_34171_cov_4.548005 13884..13886 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3024.t1	Gcaud3024.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_250_length_34171_cov_4.548005 12144..13886 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_250_length_34171_cov_4.548005:12144..13886+
coding sequence from alignment at NODE_250_length_34171_cov_4.548005:12144..13886+

mRNA sequence

>Gcaud3024.t1 ID=Gcaud3024.t1|Name=Gcaud3024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=581bp
MDDGAGADELLTELVAKHFGFDALRPNQAVTVRHLLAQRDVLVIAPTGSG
KSLTFQLPALYLHRRFNRLTLVVTPLLSLMHNQVASMRARRISASMLSSA
ESLSHNRQVIASLHRNHIPFALLYITPEKLTSPSFLQVLDKLYRNRKLAL
VAVDEAHCISEWGHDFRKAYANLGVVKSKFPTVPVVALTATATPFVQKHI
LRSLCIPRAEHVRASFLRSNVRYQVRYVHTLQTAVELDIISYVLRRRNVD
QSFQTGIVYAFKRSTVDVVADLLKTNGVPALSYHAGLSTKARKAAQHKFE
RGECPVVVASTAFGMGIDVSAIRYVIHHSIPKSLEAFYQESGRAGRDGKP
CDSIVYYSDRDVELYQFLNRQGNADEHLVESRQEKLKGVQDYCTKLRCRR
VALLEYFGEKASASKICGRHGCDVCCDIKDVRRRMAIRVANHAAKSGSSR
PSNSVSTPAADFQSARSMLKQQRDKALAAKSAEAIDDFSEEEHDPEVRQA
VKDIDIGSDDDIDFEALKRAEKAHERKRLNKLKRPRDRIMNKLGLQTAQE
ASASGSVSKRRKSIQSKVIFGERRRRKSTP*

spliced messenger RNA

>Gcaud3024.t1 ID=Gcaud3024.t1|Name=Gcaud3024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1743bp|location=Sequence derived from alignment at NODE_250_length_34171_cov_4.548005:12144..13886+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGACGGCGCGGGCGCGGACGAACTGCTGACGGAGCTTGTTGCCAA
GCACTTCGGCTTCGACGCGCTGCGCCCCAACCAGGCGGTCACTGTGCGCC
ACCTGCTCGCGCAGCGCGATGTGCTCGTCATCGCGCCTACCGGCAGCGGC
AAGTCGCTCACCTTCCAGCTCCCCGCGCTCTACTTGCATCGCCGGTTCAA
TCGACTCACGCTGGTCGTCACCCCGCTGCTATCGCTCATGCATAATCAGG
TCGCCTCGATGCGCGCACGGCGCATCTCGGCATCCATGCTGTCTTCGGCC
GAATCGCTCTCGCATAACCGCCAGGTGATTGCTTCCTTGCATCGCAACCA
CATTCCGTTTGCGCTTTTGTATATCACGCCGGAGAAGCTCACATCGCCTT
CATTCTTGCAAGTGCTCGACAAGCTGTATCGCAACCGCAAGTTAGCGCTT
GTCGCTGTCGATGAGGCCCATTGCATCTCTGAATGGGGCCATGACTTTCG
AAAAGCATACGCCAACCTGGGCGTTGTCAAGTCGAAGTTCCCAACCGTGC
CGGTCGTTGCGCTCACCGCTACTGCTACCCCTTTTGTACAGAAGCATATA
CTGAGGTCCCTTTGCATTCCACGCGCCGAGCATGTGCGCGCATCGTTTCT
GAGAAGTAACGTGCGCTATCAAGTGCGCTACGTACATACCTTGCAGACTG
CTGTCGAGCTTGACATAATCTCTTACGTTCTGCGACGGCGAAACGTTGAT
CAATCCTTCCAGACTGGCATAGTGTATGCGTTTAAACGTTCCACAGTCGA
TGTTGTGGCGGACTTGCTGAAGACAAATGGAGTGCCTGCGCTCTCCTACC
ATGCTGGATTATCCACTAAAGCACGGAAGGCAGCTCAGCACAAATTTGAA
CGTGGCGAATGTCCTGTCGTCGTTGCTTCCACAGCGTTCGGAATGGGTAT
CGATGTGTCTGCAATTCGCTATGTCATACATCACTCCATACCAAAAAGCC
TGGAGGCCTTCTATCAGGAGAGCGGCCGCGCAGGGCGCGATGGAAAACCG
TGCGACAGTATCGTTTATTATTCCGACCGTGATGTGGAACTGTATCAGTT
TCTCAATCGTCAAGGAAACGCTGATGAGCATCTTGTCGAATCGCGCCAAG
AGAAACTGAAGGGTGTCCAAGATTATTGCACCAAACTGCGCTGTAGGCGC
GTTGCTCTACTCGAGTATTTTGGTGAAAAGGCTTCTGCTAGCAAGATTTG
CGGCCGTCATGGGTGTGATGTTTGTTGTGACATCAAAGATGTTCGCAGGC
GTATGGCCATTCGTGTGGCAAATCATGCAGCAAAAAGCGGCTCAAGTCGA
CCTTCAAACTCGGTTTCCACTCCGGCTGCCGATTTTCAAAGCGCCCGATC
AATGTTGAAACAGCAACGTGACAAAGCGCTTGCCGCCAAGAGCGCCGAGG
CAATAGACGATTTCAGCGAAGAAGAGCATGATCCAGAAGTAAGACAGGCC
GTGAAGGATATTGATATAGGTTCTGATGATGACATTGACTTCGAAGCGCT
GAAAAGGGCGGAGAAAGCGCATGAAAGAAAAAGGCTGAACAAACTGAAGA
GACCGCGAGATAGGATCATGAACAAGCTTGGACTTCAGACCGCCCAAGAG
GCCTCCGCCTCAGGTTCCGTGTCAAAACGCAGGAAGAGCATTCAAAGTAA
GGTCATTTTTGGGGAGCGTCGTCGCCGCAAAAGCACACCGTAA

protein sequence of Gcaud3024.t1

>Gcaud3024.t1 ID=Gcaud3024.t1|Name=Gcaud3024.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=581bp
MDDGAGADELLTELVAKHFGFDALRPNQAVTVRHLLAQRDVLVIAPTGSG
KSLTFQLPALYLHRRFNRLTLVVTPLLSLMHNQVASMRARRISASMLSSA
ESLSHNRQVIASLHRNHIPFALLYITPEKLTSPSFLQVLDKLYRNRKLAL
VAVDEAHCISEWGHDFRKAYANLGVVKSKFPTVPVVALTATATPFVQKHI
LRSLCIPRAEHVRASFLRSNVRYQVRYVHTLQTAVELDIISYVLRRRNVD
QSFQTGIVYAFKRSTVDVVADLLKTNGVPALSYHAGLSTKARKAAQHKFE
RGECPVVVASTAFGMGIDVSAIRYVIHHSIPKSLEAFYQESGRAGRDGKP
CDSIVYYSDRDVELYQFLNRQGNADEHLVESRQEKLKGVQDYCTKLRCRR
VALLEYFGEKASASKICGRHGCDVCCDIKDVRRRMAIRVANHAAKSGSSR
PSNSVSTPAADFQSARSMLKQQRDKALAAKSAEAIDDFSEEEHDPEVRQA
VKDIDIGSDDDIDFEALKRAEKAHERKRLNKLKRPRDRIMNKLGLQTAQE
ASASGSVSKRRKSIQSKVIFGERRRRKSTP*

mRNA from alignment at NODE_250_length_34171_cov_4.548005:12144..13886+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3024.t1 ID=Gcaud3024.t1|Name=Gcaud3024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1743bp|location=Sequence derived from alignment at NODE_250_length_34171_cov_4.548005:12144..13886+ (Gracilaria caudata M_176_S67 male)
ATGGACGACGGCGCGGGCGCGGACGAACTGCTGACGGAGCTTGTTGCCAA
GCACTTCGGCTTCGACGCGCTGCGCCCCAACCAGGCGGTCACTGTGCGCC
ACCTGCTCGCGCAGCGCGATGTGCTCGTCATCGCGCCTACCGGCAGCGGC
AAGTCGCTCACCTTCCAGCTCCCCGCGCTCTACTTGCATCGCCGGTTCAA
TCGACTCACGCTGGTCGTCACCCCGCTGCTATCGCTCATGCATAATCAGG
TCGCCTCGATGCGCGCACGGCGCATCTCGGCATCCATGCTGTCTTCGGCC
GAATCGCTCTCGCATAACCGCCAGGTGATTGCTTCCTTGCATCGCAACCA
CATTCCGTTTGCGCTTTTGTATATCACGCCGGAGAAGCTCACATCGCCTT
CATTCTTGCAAGTGCTCGACAAGCTGTATCGCAACCGCAAGTTAGCGCTT
GTCGCTGTCGATGAGGCCCATTGCATCTCTGAATGGGGCCATGACTTTCG
AAAAGCATACGCCAACCTGGGCGTTGTCAAGTCGAAGTTCCCAACCGTGC
CGGTCGTTGCGCTCACCGCTACTGCTACCCCTTTTGTACAGAAGCATATA
CTGAGGTCCCTTTGCATTCCACGCGCCGAGCATGTGCGCGCATCGTTTCT
GAGAAGTAACGTGCGCTATCAAGTGCGCTACGTACATACCTTGCAGACTG
CTGTCGAGCTTGACATAATCTCTTACGTTCTGCGACGGCGAAACGTTGAT
CAATCCTTCCAGACTGGCATAGTGTATGCGTTTAAACGTTCCACAGTCGA
TGTTGTGGCGGACTTGCTGAAGACAAATGGAGTGCCTGCGCTCTCCTACC
ATGCTGGATTATCCACTAAAGCACGGAAGGCAGCTCAGCACAAATTTGAA
CGTGGCGAATGTCCTGTCGTCGTTGCTTCCACAGCGTTCGGAATGGGTAT
CGATGTGTCTGCAATTCGCTATGTCATACATCACTCCATACCAAAAAGCC
TGGAGGCCTTCTATCAGGAGAGCGGCCGCGCAGGGCGCGATGGAAAACCG
TGCGACAGTATCGTTTATTATTCCGACCGTGATGTGGAACTGTATCAGTT
TCTCAATCGTCAAGGAAACGCTGATGAGCATCTTGTCGAATCGCGCCAAG
AGAAACTGAAGGGTGTCCAAGATTATTGCACCAAACTGCGCTGTAGGCGC
GTTGCTCTACTCGAGTATTTTGGTGAAAAGGCTTCTGCTAGCAAGATTTG
CGGCCGTCATGGGTGTGATGTTTGTTGTGACATCAAAGATGTTCGCAGGC
GTATGGCCATTCGTGTGGCAAATCATGCAGCAAAAAGCGGCTCAAGTCGA
CCTTCAAACTCGGTTTCCACTCCGGCTGCCGATTTTCAAAGCGCCCGATC
AATGTTGAAACAGCAACGTGACAAAGCGCTTGCCGCCAAGAGCGCCGAGG
CAATAGACGATTTCAGCGAAGAAGAGCATGATCCAGAAGTAAGACAGGCC
GTGAAGGATATTGATATAGGTTCTGATGATGACATTGACTTCGAAGCGCT
GAAAAGGGCGGAGAAAGCGCATGAAAGAAAAAGGCTGAACAAACTGAAGA
GACCGCGAGATAGGATCATGAACAAGCTTGGACTTCAGACCGCCCAAGAG
GCCTCCGCCTCAGGTTCCGTGTCAAAACGCAGGAAGAGCATTCAAAGTAA
GGTCATTTTTGGGGAGCGTCGTCGCCGCAAAAGCACACCGTAA

Coding sequence (CDS) from alignment at NODE_250_length_34171_cov_4.548005:12144..13886+

>Gcaud3024.t1 ID=Gcaud3024.t1|Name=Gcaud3024.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1743bp|location=Sequence derived from alignment at NODE_250_length_34171_cov_4.548005:12144..13886+ (Gracilaria caudata M_176_S67 male)
ATGGACGACGGCGCGGGCGCGGACGAACTGCTGACGGAGCTTGTTGCCAA
GCACTTCGGCTTCGACGCGCTGCGCCCCAACCAGGCGGTCACTGTGCGCC
ACCTGCTCGCGCAGCGCGATGTGCTCGTCATCGCGCCTACCGGCAGCGGC
AAGTCGCTCACCTTCCAGCTCCCCGCGCTCTACTTGCATCGCCGGTTCAA
TCGACTCACGCTGGTCGTCACCCCGCTGCTATCGCTCATGCATAATCAGG
TCGCCTCGATGCGCGCACGGCGCATCTCGGCATCCATGCTGTCTTCGGCC
GAATCGCTCTCGCATAACCGCCAGGTGATTGCTTCCTTGCATCGCAACCA
CATTCCGTTTGCGCTTTTGTATATCACGCCGGAGAAGCTCACATCGCCTT
CATTCTTGCAAGTGCTCGACAAGCTGTATCGCAACCGCAAGTTAGCGCTT
GTCGCTGTCGATGAGGCCCATTGCATCTCTGAATGGGGCCATGACTTTCG
AAAAGCATACGCCAACCTGGGCGTTGTCAAGTCGAAGTTCCCAACCGTGC
CGGTCGTTGCGCTCACCGCTACTGCTACCCCTTTTGTACAGAAGCATATA
CTGAGGTCCCTTTGCATTCCACGCGCCGAGCATGTGCGCGCATCGTTTCT
GAGAAGTAACGTGCGCTATCAAGTGCGCTACGTACATACCTTGCAGACTG
CTGTCGAGCTTGACATAATCTCTTACGTTCTGCGACGGCGAAACGTTGAT
CAATCCTTCCAGACTGGCATAGTGTATGCGTTTAAACGTTCCACAGTCGA
TGTTGTGGCGGACTTGCTGAAGACAAATGGAGTGCCTGCGCTCTCCTACC
ATGCTGGATTATCCACTAAAGCACGGAAGGCAGCTCAGCACAAATTTGAA
CGTGGCGAATGTCCTGTCGTCGTTGCTTCCACAGCGTTCGGAATGGGTAT
CGATGTGTCTGCAATTCGCTATGTCATACATCACTCCATACCAAAAAGCC
TGGAGGCCTTCTATCAGGAGAGCGGCCGCGCAGGGCGCGATGGAAAACCG
TGCGACAGTATCGTTTATTATTCCGACCGTGATGTGGAACTGTATCAGTT
TCTCAATCGTCAAGGAAACGCTGATGAGCATCTTGTCGAATCGCGCCAAG
AGAAACTGAAGGGTGTCCAAGATTATTGCACCAAACTGCGCTGTAGGCGC
GTTGCTCTACTCGAGTATTTTGGTGAAAAGGCTTCTGCTAGCAAGATTTG
CGGCCGTCATGGGTGTGATGTTTGTTGTGACATCAAAGATGTTCGCAGGC
GTATGGCCATTCGTGTGGCAAATCATGCAGCAAAAAGCGGCTCAAGTCGA
CCTTCAAACTCGGTTTCCACTCCGGCTGCCGATTTTCAAAGCGCCCGATC
AATGTTGAAACAGCAACGTGACAAAGCGCTTGCCGCCAAGAGCGCCGAGG
CAATAGACGATTTCAGCGAAGAAGAGCATGATCCAGAAGTAAGACAGGCC
GTGAAGGATATTGATATAGGTTCTGATGATGACATTGACTTCGAAGCGCT
GAAAAGGGCGGAGAAAGCGCATGAAAGAAAAAGGCTGAACAAACTGAAGA
GACCGCGAGATAGGATCATGAACAAGCTTGGACTTCAGACCGCCCAAGAG
GCCTCCGCCTCAGGTTCCGTGTCAAAACGCAGGAAGAGCATTCAAAGTAA
GGTCATTTTTGGGGAGCGTCGTCGCCGCAAAAGCACACCGTAA