Gcaud3019.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3019.t1
Unique NameGcaud3019.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length418
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4996_length_1844_cov_2.617228contigNODE_4996_length_1844_cov_2.617228:475..1822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703823.1
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K11790
GOsGO:0000075,GO:0000077,GO:0000151,GO:0000209,GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010564,GO:0010948,GO:0015630,GO:0016567,GO:0018130,GO:0019438,GO:0019538,GO:0019941,GO:0019985,GO:0023052,GO:0030163,GO:0031461,GO:0031464,GO:0031465,GO:0031570,GO:0031572,GO:0032446,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0036211,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045786,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0051726,GO:0065007,GO:0070647,GO:0071704,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0072425,GO:0080008,GO:0090304,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1902494,GO:1902749,GO:1902750,GO:1990234
Evalue4.38e-55
EggNOG OGsKOG0321@1|root,KOG0321@2759|Eukaryota
Descriptionsignal transduction involved in G2 DNA damage checkpoint
COG categoryS
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3019Gcaud3019Gracilaria caudata M_176_S67 malegeneNODE_4996_length_1844_cov_2.617228 475..1822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3019.t1Gcaud3019.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4996_length_1844_cov_2.617228 475..1822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3019.t1.CDS1Gcaud3019.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4996_length_1844_cov_2.617228 475..1657 -
Gcaud3019.t1.CDS2Gcaud3019.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_4996_length_1844_cov_2.617228 1753..1822 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3019.t1.exon1Gcaud3019.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4996_length_1844_cov_2.617228 475..1657 -
Gcaud3019.t1.exon2Gcaud3019.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_4996_length_1844_cov_2.617228 1753..1822 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3019.t1.intron1Gcaud3019.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_4996_length_1844_cov_2.617228 1658..1752 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3019.t1.start1Gcaud3019.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4996_length_1844_cov_2.617228 1820..1822 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3019.t1 ID=Gcaud3019.t1|Name=Gcaud3019.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=418bp
MLTAAPPNLYSALRAREQGRIQHRPDDHLLGALRTTPDDEFSFWNVQPPH
QPHAVPPFSISFSTTALHGHALLAADEDGVLTILDTRRSFRAQLHAFQYS
PQAPPARFRAHDNAIFDAIWLNGDDDVASASGDTSVRVFDVERHIRKATC
RGASGSVKAVRTLANSPYVLATASRDGGVRVFDLRTPTFCDNSYARESYH
VPLFHVRDAHAKRRAASVASGNKRRRVQADPGVNGSVTALVAVPHSAHLF
FTAGAADGTIKLWDLRKFGRADDNHLIYTACPGEQTRLDCERRRRQYGLA
ALDIDASGTHLIASGTDSCIYMYNVRNMDLGYTHVLGGHKQTSFYIRAKF
SACGRFVGSGSADSKVYLWDTQRDSQLGRLDPILMLDAHRGGDAAGVDWC
RSEAHKLVTYSDDSTARV
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spliced messenger RNA

>Gcaud3019.t1 ID=Gcaud3019.t1|Name=Gcaud3019.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1253bp|location=Sequence derived from alignment at NODE_4996_length_1844_cov_2.617228:475..1822- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACCGCCGCTCCCCCCAACCTGTACTCCGCGCTGCGAGCGCGCGA
GCAGGGCCGCATCCAACACCGCCCCGATGATCATCTCCTCGGTGCGCTTC
GAACCACCCCCGACGACGAGTTTTCGTTCTGGAACGTACAACCCCCCCAC
CAACCACACGCCGTGCCGCCTTTCTCCATCTCCTTCTCCACCACCGCCCT
CCACGGCCACGCGCTTCTAGCCGCCGACGAAGACGGCGTGCTCACCATTC
TCGACACGCGCCGCTCCTTCCGCGCGCAGCTGCACGCGTTTCAATACTCG
CCACAGGCACCACCGGCGCGCTTCCGCGCGCACGACAACGCCATTTTCGA
CGCCATCTGGCTCAACGGCGACGACGATGTGGCCAGCGCGTCGGGCGATA
CGTCCGTGCGCGTGTTCGACGTGGAGCGACACATTCGAAAGGCGACGTGT
CGCGGCGCGTCGGGCAGCGTGAAGGCGGTGCGAACGCTGGCCAACTCGCC
GTACGTGCTGGCCACGGCGTCGCGCGACGGCGGCGTGAGGGTGTTTGACT
TGCGCACGCCCACGTTTTGTGACAACTCTTATGCGAGGGAGAGCTATCAT
GTGCCGCTGTTCCATGTGCGCGACGCGCACGCGAAGCGACGCGCGGCGTC
GGTGGCGAGCGGCAACAAGAGACGGCGCGTGCAAGCCGACCCGGGCGTGA
ATGGCAGTGTGACCGCGTTGGTGGCCGTGCCGCACAGCGCGCATTTGTTT
TTCACCGCGGGTGCGGCGGATGGTACCATCAAGTTGTGGGACTTGCGAAA
GTTTGGACGCGCCGATGATAACCACCTCATCTACACCGCATGCCCGGGCG
AACAGACGCGTCTGGACTGTGAACGGCGACGGCGGCAGTACGGTCTGGCC
GCGTTGGATATTGACGCGTCGGGCACGCATCTGATTGCGTCGGGCACGGA
CAGCTGCATCTACATGTACAACGTGCGCAACATGGACCTGGGCTACACGC
ACGTGCTGGGCGGACACAAGCAAACGTCGTTCTACATCCGCGCCAAGTTC
AGCGCGTGCGGGCGCTTTGTGGGCTCCGGCTCGGCGGACAGCAAGGTGTA
TCTGTGGGACACGCAGCGCGACAGTCAGCTGGGGCGACTGGACCCGATAT
TGATGCTGGACGCGCATCGCGGCGGCGACGCGGCGGGCGTGGATTGGTGC
AGAAGCGAGGCGCACAAGTTGGTGACGTACTCGGACGACTCCACGGCGCG
CGT
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protein sequence of Gcaud3019.t1

>Gcaud3019.t1 ID=Gcaud3019.t1|Name=Gcaud3019.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=418bp
MLTAAPPNLYSALRAREQGRIQHRPDDHLLGALRTTPDDEFSFWNVQPPH
QPHAVPPFSISFSTTALHGHALLAADEDGVLTILDTRRSFRAQLHAFQYS
PQAPPARFRAHDNAIFDAIWLNGDDDVASASGDTSVRVFDVERHIRKATC
RGASGSVKAVRTLANSPYVLATASRDGGVRVFDLRTPTFCDNSYARESYH
VPLFHVRDAHAKRRAASVASGNKRRRVQADPGVNGSVTALVAVPHSAHLF
FTAGAADGTIKLWDLRKFGRADDNHLIYTACPGEQTRLDCERRRRQYGLA
ALDIDASGTHLIASGTDSCIYMYNVRNMDLGYTHVLGGHKQTSFYIRAKF
SACGRFVGSGSADSKVYLWDTQRDSQLGRLDPILMLDAHRGGDAAGVDWC
RSEAHKLVTYSDDSTARV
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mRNA from alignment at NODE_4996_length_1844_cov_2.617228:475..1822-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3019.t1 ID=Gcaud3019.t1|Name=Gcaud3019.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1348bp|location=Sequence derived from alignment at NODE_4996_length_1844_cov_2.617228:475..1822- (Gracilaria caudata M_176_S67 male)
ATGCTCACCGCCGCTCCCCCCAACCTGTACTCCGCGCTGCGAGCGCGCGA
GCAGGGCCGCATCCAACACCGTAAGCTATGCCCTCCGTCCCACCACTCTT
CTCCGCCGCTGTTCACCAAACCCCCACTAACCACCCAATCCCATTCCCAA
TGCAAAAACAAAAAGGCCCCGATGATCATCTCCTCGGTGCGCTTCGAACC
ACCCCCGACGACGAGTTTTCGTTCTGGAACGTACAACCCCCCCACCAACC
ACACGCCGTGCCGCCTTTCTCCATCTCCTTCTCCACCACCGCCCTCCACG
GCCACGCGCTTCTAGCCGCCGACGAAGACGGCGTGCTCACCATTCTCGAC
ACGCGCCGCTCCTTCCGCGCGCAGCTGCACGCGTTTCAATACTCGCCACA
GGCACCACCGGCGCGCTTCCGCGCGCACGACAACGCCATTTTCGACGCCA
TCTGGCTCAACGGCGACGACGATGTGGCCAGCGCGTCGGGCGATACGTCC
GTGCGCGTGTTCGACGTGGAGCGACACATTCGAAAGGCGACGTGTCGCGG
CGCGTCGGGCAGCGTGAAGGCGGTGCGAACGCTGGCCAACTCGCCGTACG
TGCTGGCCACGGCGTCGCGCGACGGCGGCGTGAGGGTGTTTGACTTGCGC
ACGCCCACGTTTTGTGACAACTCTTATGCGAGGGAGAGCTATCATGTGCC
GCTGTTCCATGTGCGCGACGCGCACGCGAAGCGACGCGCGGCGTCGGTGG
CGAGCGGCAACAAGAGACGGCGCGTGCAAGCCGACCCGGGCGTGAATGGC
AGTGTGACCGCGTTGGTGGCCGTGCCGCACAGCGCGCATTTGTTTTTCAC
CGCGGGTGCGGCGGATGGTACCATCAAGTTGTGGGACTTGCGAAAGTTTG
GACGCGCCGATGATAACCACCTCATCTACACCGCATGCCCGGGCGAACAG
ACGCGTCTGGACTGTGAACGGCGACGGCGGCAGTACGGTCTGGCCGCGTT
GGATATTGACGCGTCGGGCACGCATCTGATTGCGTCGGGCACGGACAGCT
GCATCTACATGTACAACGTGCGCAACATGGACCTGGGCTACACGCACGTG
CTGGGCGGACACAAGCAAACGTCGTTCTACATCCGCGCCAAGTTCAGCGC
GTGCGGGCGCTTTGTGGGCTCCGGCTCGGCGGACAGCAAGGTGTATCTGT
GGGACACGCAGCGCGACAGTCAGCTGGGGCGACTGGACCCGATATTGATG
CTGGACGCGCATCGCGGCGGCGACGCGGCGGGCGTGGATTGGTGCAGAAG
CGAGGCGCACAAGTTGGTGACGTACTCGGACGACTCCACGGCGCGCGT
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Coding sequence (CDS) from alignment at NODE_4996_length_1844_cov_2.617228:475..1822-

>Gcaud3019.t1 ID=Gcaud3019.t1|Name=Gcaud3019.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1253bp|location=Sequence derived from alignment at NODE_4996_length_1844_cov_2.617228:475..1822- (Gracilaria caudata M_176_S67 male)
ATGCTCACCGCCGCTCCCCCCAACCTGTACTCCGCGCTGCGAGCGCGCGA
GCAGGGCCGCATCCAACACCGCCCCGATGATCATCTCCTCGGTGCGCTTC
GAACCACCCCCGACGACGAGTTTTCGTTCTGGAACGTACAACCCCCCCAC
CAACCACACGCCGTGCCGCCTTTCTCCATCTCCTTCTCCACCACCGCCCT
CCACGGCCACGCGCTTCTAGCCGCCGACGAAGACGGCGTGCTCACCATTC
TCGACACGCGCCGCTCCTTCCGCGCGCAGCTGCACGCGTTTCAATACTCG
CCACAGGCACCACCGGCGCGCTTCCGCGCGCACGACAACGCCATTTTCGA
CGCCATCTGGCTCAACGGCGACGACGATGTGGCCAGCGCGTCGGGCGATA
CGTCCGTGCGCGTGTTCGACGTGGAGCGACACATTCGAAAGGCGACGTGT
CGCGGCGCGTCGGGCAGCGTGAAGGCGGTGCGAACGCTGGCCAACTCGCC
GTACGTGCTGGCCACGGCGTCGCGCGACGGCGGCGTGAGGGTGTTTGACT
TGCGCACGCCCACGTTTTGTGACAACTCTTATGCGAGGGAGAGCTATCAT
GTGCCGCTGTTCCATGTGCGCGACGCGCACGCGAAGCGACGCGCGGCGTC
GGTGGCGAGCGGCAACAAGAGACGGCGCGTGCAAGCCGACCCGGGCGTGA
ATGGCAGTGTGACCGCGTTGGTGGCCGTGCCGCACAGCGCGCATTTGTTT
TTCACCGCGGGTGCGGCGGATGGTACCATCAAGTTGTGGGACTTGCGAAA
GTTTGGACGCGCCGATGATAACCACCTCATCTACACCGCATGCCCGGGCG
AACAGACGCGTCTGGACTGTGAACGGCGACGGCGGCAGTACGGTCTGGCC
GCGTTGGATATTGACGCGTCGGGCACGCATCTGATTGCGTCGGGCACGGA
CAGCTGCATCTACATGTACAACGTGCGCAACATGGACCTGGGCTACACGC
ACGTGCTGGGCGGACACAAGCAAACGTCGTTCTACATCCGCGCCAAGTTC
AGCGCGTGCGGGCGCTTTGTGGGCTCCGGCTCGGCGGACAGCAAGGTGTA
TCTGTGGGACACGCAGCGCGACAGTCAGCTGGGGCGACTGGACCCGATAT
TGATGCTGGACGCGCATCGCGGCGGCGACGCGGCGGGCGTGGATTGGTGC
AGAAGCGAGGCGCACAAGTTGGTGACGTACTCGGACGACTCCACGGCGCG
CGT
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