Gcaud3011.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3011.t1
Unique Name	Gcaud3011.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	511

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_117_length_47832_cov_4.546323	contig	NODE_117_length_47832_cov_4.546323:20424..21956 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002593177.1
Preferred name	UBXN7
PFAMs	Thioredoxin_7,UBA_4,UBX
Max annot lvl	33208\|Metazoa
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016604,GO:0019538,GO:0019899,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032182,GO:0032991,GO:0034098,GO:0036211,GO:0042175,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0070013,GO:0071704,GO:0098796,GO:0098827,GO:1901564
Evalue	9.98e-07
EggNOG OGs	COG0086@1\|root,KOG1364@1\|root,KOG0260@2759\|Eukaryota,KOG1364@2759\|Eukaryota,38E6Y@33154\|Opisthokonta,3B9GZ@33208\|Metazoa,3D2HB@33213\|Bilateria,48750@7711\|Chordata
Description	ubiquitin binding
COG category	KO

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3011	Gcaud3011	Gracilaria caudata M_176_S67 male	gene	NODE_117_length_47832_cov_4.546323 20424..21956 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3011.t1.stop1	Gcaud3011.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_117_length_47832_cov_4.546323 20424..20426 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3011.t1.CDS1	Gcaud3011.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_117_length_47832_cov_4.546323 20424..21956 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3011.t1.exon1	Gcaud3011.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_117_length_47832_cov_4.546323 20424..21956 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3011.t1.start1	Gcaud3011.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_117_length_47832_cov_4.546323 21954..21956 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3011.t1	Gcaud3011.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_117_length_47832_cov_4.546323 20424..21956 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_117_length_47832_cov_4.546323:20424..21956-
coding sequence from alignment at NODE_117_length_47832_cov_4.546323:20424..21956-

mRNA sequence

>Gcaud3011.t1 ID=Gcaud3011.t1|Name=Gcaud3011.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=511bp
MQPDQPRPALSTTPPPPPQRDSPPSPPPAPTLAALPPPASAPAPPPLPAP
PTPVPPPQQPAQPTLHSFIGTLDALQRAAQRQSKWPLVMILPQAKPSSAP
SSAPSSLSASRPAWGPNALHRSPALLTTPDIDNNVILWRRTTGSSDAERY
TAFFPTDGLPHVALLDPRSGERLCVWGNVDEANMEHNRISEQLWSSVQQS
ILHFLEHHSLEDGALGPLHTQDKPWAVRTRRISQSDDNLPSTSIMDDEEA
AMAAAIKASLEEAAAANAVFDNDDISDMDRSDDTGSTDVSPILDDYGPST
ASNEDERDHSSDVDLDLTTDSQPVLPPPSRPILIPQRRREGFPSSVESLS
SSYMDRMESSLRSSANPHLVEIRRLREQQDAELARSLQEDRERERKEHVE
AERKAVVKEHMLNAAARLPSEPAENSNCLTIAIRMGGGSRITRRFNRSDL
LQSVADFVIASSGIITLAKAEPCLALKTAGAPLKRVSWQTRLGDLGLSNR
TMFTLNEAVL*

spliced messenger RNA

>Gcaud3011.t1 ID=Gcaud3011.t1|Name=Gcaud3011.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at NODE_117_length_47832_cov_4.546323:20424..21956- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCGACCAGCCTCGGCCCGCCCTTTCCACCACGCCGCCGCCGCC
GCCGCAGAGAGACTCGCCGCCGTCTCCGCCTCCCGCTCCCACTCTCGCCG
CGCTGCCGCCGCCCGCTTCCGCGCCTGCGCCGCCGCCGCTGCCCGCGCCC
CCGACGCCGGTGCCACCTCCCCAGCAACCCGCGCAGCCCACGCTGCACAG
CTTCATAGGCACTCTGGACGCGCTGCAACGCGCGGCGCAGCGTCAGAGCA
AATGGCCACTTGTGATGATACTCCCGCAAGCCAAGCCATCCTCCGCGCCG
TCCTCCGCGCCGTCCTCCCTTTCAGCCAGTCGCCCCGCGTGGGGTCCGAA
CGCTCTCCATCGCTCCCCCGCTCTCCTCACCACCCCCGACATTGACAACA
ACGTCATCCTGTGGCGCCGCACAACAGGCTCCTCTGACGCAGAGCGCTAC
ACCGCTTTCTTTCCGACCGATGGCCTGCCCCACGTCGCTCTTCTTGATCC
CAGGTCGGGCGAACGACTGTGCGTGTGGGGAAACGTCGACGAAGCCAACA
TGGAGCACAACCGCATCTCTGAACAGTTGTGGTCTAGCGTGCAGCAAAGC
ATCCTCCACTTTTTGGAGCATCATAGTCTGGAAGACGGTGCGCTGGGACC
TTTGCACACGCAGGACAAACCATGGGCTGTGCGCACCAGGCGTATAAGCC
AAAGCGACGATAATTTGCCCAGCACCTCCATTATGGACGATGAGGAAGCT
GCCATGGCGGCCGCCATAAAGGCCTCCTTGGAGGAAGCCGCCGCCGCAAA
TGCTGTGTTCGACAATGATGATATCTCCGATATGGATAGGTCAGACGATA
CTGGCAGCACTGATGTGTCTCCAATCCTCGATGACTACGGACCTTCTACC
GCTTCCAATGAAGACGAGCGTGACCACAGCAGTGATGTTGACCTAGACCT
CACAACGGATTCGCAGCCTGTGCTTCCACCGCCAAGCAGGCCCATCCTTA
TCCCACAGCGCCGCAGGGAGGGCTTCCCTTCCTCCGTGGAGTCTCTGTCA
TCTTCGTATATGGATCGAATGGAGTCAAGTCTGCGCTCATCCGCAAACCC
GCACCTTGTTGAAATTCGTCGCTTACGGGAGCAGCAGGACGCAGAGCTTG
CTCGCTCTCTTCAGGAAGACCGCGAGCGCGAACGAAAGGAACATGTCGAG
GCTGAACGAAAGGCAGTGGTCAAAGAGCATATGCTGAACGCGGCGGCTCG
GTTACCGAGCGAGCCGGCGGAAAACAGCAATTGCCTCACAATCGCAATCC
GAATGGGTGGTGGAAGTCGCATCACTCGCAGATTCAACCGCAGTGACCTG
TTACAGAGCGTCGCTGATTTTGTAATCGCCAGTAGTGGAATTATTACGCT
GGCAAAGGCCGAACCATGTCTGGCGTTGAAGACGGCAGGAGCGCCTCTTA
AACGTGTGTCTTGGCAGACACGGCTGGGTGATCTCGGTCTGAGCAACAGG
ACCATGTTCACGTTGAACGAAGCAGTACTATAA

protein sequence of Gcaud3011.t1

>Gcaud3011.t1 ID=Gcaud3011.t1|Name=Gcaud3011.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=511bp
MQPDQPRPALSTTPPPPPQRDSPPSPPPAPTLAALPPPASAPAPPPLPAP
PTPVPPPQQPAQPTLHSFIGTLDALQRAAQRQSKWPLVMILPQAKPSSAP
SSAPSSLSASRPAWGPNALHRSPALLTTPDIDNNVILWRRTTGSSDAERY
TAFFPTDGLPHVALLDPRSGERLCVWGNVDEANMEHNRISEQLWSSVQQS
ILHFLEHHSLEDGALGPLHTQDKPWAVRTRRISQSDDNLPSTSIMDDEEA
AMAAAIKASLEEAAAANAVFDNDDISDMDRSDDTGSTDVSPILDDYGPST
ASNEDERDHSSDVDLDLTTDSQPVLPPPSRPILIPQRRREGFPSSVESLS
SSYMDRMESSLRSSANPHLVEIRRLREQQDAELARSLQEDRERERKEHVE
AERKAVVKEHMLNAAARLPSEPAENSNCLTIAIRMGGGSRITRRFNRSDL
LQSVADFVIASSGIITLAKAEPCLALKTAGAPLKRVSWQTRLGDLGLSNR
TMFTLNEAVL*

mRNA from alignment at NODE_117_length_47832_cov_4.546323:20424..21956-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3011.t1 ID=Gcaud3011.t1|Name=Gcaud3011.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at NODE_117_length_47832_cov_4.546323:20424..21956- (Gracilaria caudata M_176_S67 male)
ATGCAGCCCGACCAGCCTCGGCCCGCCCTTTCCACCACGCCGCCGCCGCC
GCCGCAGAGAGACTCGCCGCCGTCTCCGCCTCCCGCTCCCACTCTCGCCG
CGCTGCCGCCGCCCGCTTCCGCGCCTGCGCCGCCGCCGCTGCCCGCGCCC
CCGACGCCGGTGCCACCTCCCCAGCAACCCGCGCAGCCCACGCTGCACAG
CTTCATAGGCACTCTGGACGCGCTGCAACGCGCGGCGCAGCGTCAGAGCA
AATGGCCACTTGTGATGATACTCCCGCAAGCCAAGCCATCCTCCGCGCCG
TCCTCCGCGCCGTCCTCCCTTTCAGCCAGTCGCCCCGCGTGGGGTCCGAA
CGCTCTCCATCGCTCCCCCGCTCTCCTCACCACCCCCGACATTGACAACA
ACGTCATCCTGTGGCGCCGCACAACAGGCTCCTCTGACGCAGAGCGCTAC
ACCGCTTTCTTTCCGACCGATGGCCTGCCCCACGTCGCTCTTCTTGATCC
CAGGTCGGGCGAACGACTGTGCGTGTGGGGAAACGTCGACGAAGCCAACA
TGGAGCACAACCGCATCTCTGAACAGTTGTGGTCTAGCGTGCAGCAAAGC
ATCCTCCACTTTTTGGAGCATCATAGTCTGGAAGACGGTGCGCTGGGACC
TTTGCACACGCAGGACAAACCATGGGCTGTGCGCACCAGGCGTATAAGCC
AAAGCGACGATAATTTGCCCAGCACCTCCATTATGGACGATGAGGAAGCT
GCCATGGCGGCCGCCATAAAGGCCTCCTTGGAGGAAGCCGCCGCCGCAAA
TGCTGTGTTCGACAATGATGATATCTCCGATATGGATAGGTCAGACGATA
CTGGCAGCACTGATGTGTCTCCAATCCTCGATGACTACGGACCTTCTACC
GCTTCCAATGAAGACGAGCGTGACCACAGCAGTGATGTTGACCTAGACCT
CACAACGGATTCGCAGCCTGTGCTTCCACCGCCAAGCAGGCCCATCCTTA
TCCCACAGCGCCGCAGGGAGGGCTTCCCTTCCTCCGTGGAGTCTCTGTCA
TCTTCGTATATGGATCGAATGGAGTCAAGTCTGCGCTCATCCGCAAACCC
GCACCTTGTTGAAATTCGTCGCTTACGGGAGCAGCAGGACGCAGAGCTTG
CTCGCTCTCTTCAGGAAGACCGCGAGCGCGAACGAAAGGAACATGTCGAG
GCTGAACGAAAGGCAGTGGTCAAAGAGCATATGCTGAACGCGGCGGCTCG
GTTACCGAGCGAGCCGGCGGAAAACAGCAATTGCCTCACAATCGCAATCC
GAATGGGTGGTGGAAGTCGCATCACTCGCAGATTCAACCGCAGTGACCTG
TTACAGAGCGTCGCTGATTTTGTAATCGCCAGTAGTGGAATTATTACGCT
GGCAAAGGCCGAACCATGTCTGGCGTTGAAGACGGCAGGAGCGCCTCTTA
AACGTGTGTCTTGGCAGACACGGCTGGGTGATCTCGGTCTGAGCAACAGG
ACCATGTTCACGTTGAACGAAGCAGTACTATAA

Coding sequence (CDS) from alignment at NODE_117_length_47832_cov_4.546323:20424..21956-

>Gcaud3011.t1 ID=Gcaud3011.t1|Name=Gcaud3011.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1533bp|location=Sequence derived from alignment at NODE_117_length_47832_cov_4.546323:20424..21956- (Gracilaria caudata M_176_S67 male)
ATGCAGCCCGACCAGCCTCGGCCCGCCCTTTCCACCACGCCGCCGCCGCC
GCCGCAGAGAGACTCGCCGCCGTCTCCGCCTCCCGCTCCCACTCTCGCCG
CGCTGCCGCCGCCCGCTTCCGCGCCTGCGCCGCCGCCGCTGCCCGCGCCC
CCGACGCCGGTGCCACCTCCCCAGCAACCCGCGCAGCCCACGCTGCACAG
CTTCATAGGCACTCTGGACGCGCTGCAACGCGCGGCGCAGCGTCAGAGCA
AATGGCCACTTGTGATGATACTCCCGCAAGCCAAGCCATCCTCCGCGCCG
TCCTCCGCGCCGTCCTCCCTTTCAGCCAGTCGCCCCGCGTGGGGTCCGAA
CGCTCTCCATCGCTCCCCCGCTCTCCTCACCACCCCCGACATTGACAACA
ACGTCATCCTGTGGCGCCGCACAACAGGCTCCTCTGACGCAGAGCGCTAC
ACCGCTTTCTTTCCGACCGATGGCCTGCCCCACGTCGCTCTTCTTGATCC
CAGGTCGGGCGAACGACTGTGCGTGTGGGGAAACGTCGACGAAGCCAACA
TGGAGCACAACCGCATCTCTGAACAGTTGTGGTCTAGCGTGCAGCAAAGC
ATCCTCCACTTTTTGGAGCATCATAGTCTGGAAGACGGTGCGCTGGGACC
TTTGCACACGCAGGACAAACCATGGGCTGTGCGCACCAGGCGTATAAGCC
AAAGCGACGATAATTTGCCCAGCACCTCCATTATGGACGATGAGGAAGCT
GCCATGGCGGCCGCCATAAAGGCCTCCTTGGAGGAAGCCGCCGCCGCAAA
TGCTGTGTTCGACAATGATGATATCTCCGATATGGATAGGTCAGACGATA
CTGGCAGCACTGATGTGTCTCCAATCCTCGATGACTACGGACCTTCTACC
GCTTCCAATGAAGACGAGCGTGACCACAGCAGTGATGTTGACCTAGACCT
CACAACGGATTCGCAGCCTGTGCTTCCACCGCCAAGCAGGCCCATCCTTA
TCCCACAGCGCCGCAGGGAGGGCTTCCCTTCCTCCGTGGAGTCTCTGTCA
TCTTCGTATATGGATCGAATGGAGTCAAGTCTGCGCTCATCCGCAAACCC
GCACCTTGTTGAAATTCGTCGCTTACGGGAGCAGCAGGACGCAGAGCTTG
CTCGCTCTCTTCAGGAAGACCGCGAGCGCGAACGAAAGGAACATGTCGAG
GCTGAACGAAAGGCAGTGGTCAAAGAGCATATGCTGAACGCGGCGGCTCG
GTTACCGAGCGAGCCGGCGGAAAACAGCAATTGCCTCACAATCGCAATCC
GAATGGGTGGTGGAAGTCGCATCACTCGCAGATTCAACCGCAGTGACCTG
TTACAGAGCGTCGCTGATTTTGTAATCGCCAGTAGTGGAATTATTACGCT
GGCAAAGGCCGAACCATGTCTGGCGTTGAAGACGGCAGGAGCGCCTCTTA
AACGTGTGTCTTGGCAGACACGGCTGGGTGATCTCGGTCTGAGCAACAGG
ACCATGTTCACGTTGAACGAAGCAGTACTATAA