Gcaud3000.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3000.t1
Unique Name	Gcaud3000.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	790

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_222_length_35706_cov_4.342356	contig	NODE_222_length_35706_cov_4.342356:27330..29699 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP01359
PFAMs	Cytochrom_B561,DOMON,Kelch_3
Max annot lvl	2759\|Eukaryota
Evalue	1.84e-34
EggNOG OGs	KOG4293@1\|root,KOG4293@2759\|Eukaryota
Description	DOMON domain-containing protein
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3000	Gcaud3000	Gracilaria caudata M_176_S67 male	gene	NODE_222_length_35706_cov_4.342356 27330..29699 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3000.t1.start1	Gcaud3000.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_222_length_35706_cov_4.342356 27330..27332 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3000.t1.CDS1	Gcaud3000.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 27330..29699 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3000.t1.exon1	Gcaud3000.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 27330..29699 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3000.t1.stop1	Gcaud3000.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_222_length_35706_cov_4.342356 29697..29699 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3000.t1	Gcaud3000.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_222_length_35706_cov_4.342356 27330..29699 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_222_length_35706_cov_4.342356:27330..29699+
coding sequence from alignment at NODE_222_length_35706_cov_4.342356:27330..29699+

mRNA sequence

>Gcaud3000.t1 ID=Gcaud3000.t1|Name=Gcaud3000.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=790bp
MTISSSASWFLISLFLASRSASAQHRFSLTPLVTATARNPSPRSDHLSVV
VNSGSGPLLIIHGGRDVHGAKSDTWTYIVARNEWGLLASGALGSSERPPP
LYGAVGGYRFVDGENSPFLYVALGTSDGVRSLNTDMWVMEFRNFTWRRVT
VDGEKPEPRFGAIGSLERFSKPDGTVQPALIISHGYGKDGPLSDTYKCTF
DEKDPYRAKWTRLRRPVSQYSTRNPHSMWYQASTFTANRDIVVFGGCYAS
EGTGGICPNNDVWLLEYKHEENNNADALQPLRGPNSTSLKAETVRWQILP
RGPAPRVGAAMAQGLNSFEGAYESRLGIAVLYSGSQDTTYLPSDHVISAH
RVDGSEIDLISTQARTWLREVVKFDGPEELQKTAFTPRKGASLDIVRNRT
EDDDLDIPNEFFLFFGGELENGQFTNDLMKLSFDPFVESLLIEGSSRYIS
RPFVHGLLMFIAFGVLMSIGSFVARYMKHPNGRPKYFLAHLLIQSLGLVL
SWVGVAVAIQGRRNASTPFLHARLGIALIIIASLQPVIASVGIVAQMRVN
PVLVLTNKPDAPKLILSRATRACRLLHRIIGVAVLAMGWLNVTLGLFLIV
APTILWVHWLVYVIMLLVTAGWLELMRRKHGTRAITRATSHHRASIERPS
SVLGRVMRSIQGESTAKLRLGEDGSEAAERISQSESMKEVRPEDEIGPER
TATPKQARAGKFVVIEDFVQPDIVRQVVEEERAQQRAEKEKEEQLAEENR
ARENAAEHDRVQEEFDVFGFPRSLSEATSRYTYRDPDAY*

spliced messenger RNA

>Gcaud3000.t1 ID=Gcaud3000.t1|Name=Gcaud3000.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2370bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:27330..29699+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGATCAGTTCTTCTGCGAGCTGGTTTCTCATCTCCTTGTTTTTAGC
TTCACGTTCTGCATCTGCTCAACATCGATTTTCTCTCACTCCCCTGGTTA
CTGCGACAGCGAGGAATCCCTCACCTCGAAGCGATCATCTTTCGGTAGTT
GTAAACTCCGGGAGCGGTCCGCTCCTCATCATTCACGGTGGCAGAGACGT
ACATGGTGCAAAGTCTGACACTTGGACTTACATTGTCGCACGAAATGAAT
GGGGACTTCTTGCATCGGGTGCTCTGGGATCAAGTGAACGACCTCCTCCC
CTTTACGGTGCAGTTGGTGGATATCGCTTCGTGGATGGAGAAAACTCTCC
ATTTCTCTATGTTGCGTTAGGAACGAGTGATGGAGTGAGGTCATTGAATA
CAGATATGTGGGTTATGGAATTCCGGAACTTCACATGGCGACGCGTAACC
GTTGACGGTGAAAAGCCAGAACCTCGTTTCGGTGCGATTGGCAGTTTAGA
AAGGTTCAGCAAACCAGACGGAACTGTGCAGCCAGCCCTTATCATCAGTC
ATGGATATGGTAAAGACGGCCCTCTTAGCGATACATATAAATGTACGTTC
GATGAAAAGGATCCTTATCGAGCGAAATGGACAAGGCTGCGAAGGCCTGT
TTCTCAGTATTCAACTCGCAACCCGCATTCAATGTGGTATCAAGCAAGTA
CTTTCACTGCCAACCGTGACATCGTTGTCTTCGGTGGATGTTACGCGAGC
GAAGGTACGGGAGGAATATGTCCCAATAACGATGTATGGCTTCTCGAATA
TAAACATGAAGAAAACAACAACGCGGATGCTCTCCAGCCACTCCGAGGAC
CAAATTCGACTTCTTTGAAAGCAGAGACAGTGCGTTGGCAGATCCTGCCA
CGAGGACCAGCACCCAGGGTTGGAGCAGCAATGGCGCAGGGCCTTAATTC
TTTTGAAGGTGCCTACGAAAGTCGGTTAGGTATCGCTGTTTTGTACAGCG
GTTCCCAGGACACTACGTACTTGCCGTCAGACCACGTCATTTCTGCTCAT
AGGGTCGACGGGAGCGAAATTGATCTTATTTCCACTCAAGCGCGCACATG
GTTGAGAGAAGTTGTTAAGTTCGACGGACCCGAAGAACTACAAAAGACAG
CGTTTACGCCGCGGAAGGGGGCCTCTTTGGATATTGTCAGAAATAGAACC
GAAGATGATGATCTTGATATCCCGAACGAATTCTTTCTGTTCTTCGGCGG
CGAACTCGAAAACGGACAGTTTACCAATGACTTGATGAAGTTGTCATTCG
ATCCCTTTGTGGAATCTCTCTTAATTGAAGGTTCATCGCGTTACATATCC
CGCCCATTTGTTCATGGTTTACTGATGTTTATAGCGTTCGGGGTATTGAT
GAGCATTGGGTCGTTCGTTGCGAGATATATGAAGCATCCAAATGGACGAC
CAAAGTATTTCCTTGCTCATCTCCTCATTCAATCGCTCGGGCTCGTTCTC
AGCTGGGTTGGTGTTGCAGTAGCGATTCAAGGCAGACGGAACGCTTCCAC
GCCCTTCCTTCATGCCCGACTGGGAATCGCGTTAATTATTATTGCTTCTT
TGCAGCCAGTGATTGCTTCCGTGGGAATCGTAGCCCAAATGCGTGTCAAC
CCCGTATTGGTATTAACTAACAAGCCTGATGCTCCCAAACTTATATTGAG
TCGAGCCACCAGAGCATGTCGTCTGTTACATCGAATCATCGGGGTAGCGG
TTCTCGCAATGGGTTGGTTGAATGTTACACTAGGATTGTTCTTAATTGTT
GCTCCCACCATTCTTTGGGTGCACTGGTTGGTGTATGTAATAATGCTACT
TGTTACAGCAGGATGGTTGGAACTAATGAGGAGAAAGCACGGCACAAGAG
CAATCACGAGAGCAACTTCACATCACAGAGCGAGTATTGAAAGACCTTCA
TCCGTACTCGGCAGAGTCATGCGATCCATTCAGGGGGAATCGACAGCTAA
ACTAAGACTGGGTGAGGATGGCAGTGAAGCGGCAGAAAGGATATCACAAT
CTGAAAGCATGAAGGAAGTCAGGCCTGAAGACGAAATAGGGCCCGAAAGG
ACCGCAACACCGAAACAGGCACGGGCTGGGAAATTCGTGGTTATTGAAGA
TTTTGTGCAGCCGGATATTGTTCGCCAAGTAGTGGAAGAGGAGAGGGCCC
AGCAACGTGCAGAGAAAGAAAAAGAAGAGCAGCTTGCGGAAGAAAACAGA
GCTCGAGAGAATGCTGCCGAGCATGACAGAGTTCAGGAAGAATTTGATGT
GTTTGGTTTTCCAAGATCATTATCGGAAGCAACCTCTAGGTATACCTATC
GCGATCCTGATGCGTACTAA

protein sequence of Gcaud3000.t1

>Gcaud3000.t1 ID=Gcaud3000.t1|Name=Gcaud3000.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=790bp
MTISSSASWFLISLFLASRSASAQHRFSLTPLVTATARNPSPRSDHLSVV
VNSGSGPLLIIHGGRDVHGAKSDTWTYIVARNEWGLLASGALGSSERPPP
LYGAVGGYRFVDGENSPFLYVALGTSDGVRSLNTDMWVMEFRNFTWRRVT
VDGEKPEPRFGAIGSLERFSKPDGTVQPALIISHGYGKDGPLSDTYKCTF
DEKDPYRAKWTRLRRPVSQYSTRNPHSMWYQASTFTANRDIVVFGGCYAS
EGTGGICPNNDVWLLEYKHEENNNADALQPLRGPNSTSLKAETVRWQILP
RGPAPRVGAAMAQGLNSFEGAYESRLGIAVLYSGSQDTTYLPSDHVISAH
RVDGSEIDLISTQARTWLREVVKFDGPEELQKTAFTPRKGASLDIVRNRT
EDDDLDIPNEFFLFFGGELENGQFTNDLMKLSFDPFVESLLIEGSSRYIS
RPFVHGLLMFIAFGVLMSIGSFVARYMKHPNGRPKYFLAHLLIQSLGLVL
SWVGVAVAIQGRRNASTPFLHARLGIALIIIASLQPVIASVGIVAQMRVN
PVLVLTNKPDAPKLILSRATRACRLLHRIIGVAVLAMGWLNVTLGLFLIV
APTILWVHWLVYVIMLLVTAGWLELMRRKHGTRAITRATSHHRASIERPS
SVLGRVMRSIQGESTAKLRLGEDGSEAAERISQSESMKEVRPEDEIGPER
TATPKQARAGKFVVIEDFVQPDIVRQVVEEERAQQRAEKEKEEQLAEENR
ARENAAEHDRVQEEFDVFGFPRSLSEATSRYTYRDPDAY*

mRNA from alignment at NODE_222_length_35706_cov_4.342356:27330..29699+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3000.t1 ID=Gcaud3000.t1|Name=Gcaud3000.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2370bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:27330..29699+ (Gracilaria caudata M_176_S67 male)
ATGACGATCAGTTCTTCTGCGAGCTGGTTTCTCATCTCCTTGTTTTTAGC
TTCACGTTCTGCATCTGCTCAACATCGATTTTCTCTCACTCCCCTGGTTA
CTGCGACAGCGAGGAATCCCTCACCTCGAAGCGATCATCTTTCGGTAGTT
GTAAACTCCGGGAGCGGTCCGCTCCTCATCATTCACGGTGGCAGAGACGT
ACATGGTGCAAAGTCTGACACTTGGACTTACATTGTCGCACGAAATGAAT
GGGGACTTCTTGCATCGGGTGCTCTGGGATCAAGTGAACGACCTCCTCCC
CTTTACGGTGCAGTTGGTGGATATCGCTTCGTGGATGGAGAAAACTCTCC
ATTTCTCTATGTTGCGTTAGGAACGAGTGATGGAGTGAGGTCATTGAATA
CAGATATGTGGGTTATGGAATTCCGGAACTTCACATGGCGACGCGTAACC
GTTGACGGTGAAAAGCCAGAACCTCGTTTCGGTGCGATTGGCAGTTTAGA
AAGGTTCAGCAAACCAGACGGAACTGTGCAGCCAGCCCTTATCATCAGTC
ATGGATATGGTAAAGACGGCCCTCTTAGCGATACATATAAATGTACGTTC
GATGAAAAGGATCCTTATCGAGCGAAATGGACAAGGCTGCGAAGGCCTGT
TTCTCAGTATTCAACTCGCAACCCGCATTCAATGTGGTATCAAGCAAGTA
CTTTCACTGCCAACCGTGACATCGTTGTCTTCGGTGGATGTTACGCGAGC
GAAGGTACGGGAGGAATATGTCCCAATAACGATGTATGGCTTCTCGAATA
TAAACATGAAGAAAACAACAACGCGGATGCTCTCCAGCCACTCCGAGGAC
CAAATTCGACTTCTTTGAAAGCAGAGACAGTGCGTTGGCAGATCCTGCCA
CGAGGACCAGCACCCAGGGTTGGAGCAGCAATGGCGCAGGGCCTTAATTC
TTTTGAAGGTGCCTACGAAAGTCGGTTAGGTATCGCTGTTTTGTACAGCG
GTTCCCAGGACACTACGTACTTGCCGTCAGACCACGTCATTTCTGCTCAT
AGGGTCGACGGGAGCGAAATTGATCTTATTTCCACTCAAGCGCGCACATG
GTTGAGAGAAGTTGTTAAGTTCGACGGACCCGAAGAACTACAAAAGACAG
CGTTTACGCCGCGGAAGGGGGCCTCTTTGGATATTGTCAGAAATAGAACC
GAAGATGATGATCTTGATATCCCGAACGAATTCTTTCTGTTCTTCGGCGG
CGAACTCGAAAACGGACAGTTTACCAATGACTTGATGAAGTTGTCATTCG
ATCCCTTTGTGGAATCTCTCTTAATTGAAGGTTCATCGCGTTACATATCC
CGCCCATTTGTTCATGGTTTACTGATGTTTATAGCGTTCGGGGTATTGAT
GAGCATTGGGTCGTTCGTTGCGAGATATATGAAGCATCCAAATGGACGAC
CAAAGTATTTCCTTGCTCATCTCCTCATTCAATCGCTCGGGCTCGTTCTC
AGCTGGGTTGGTGTTGCAGTAGCGATTCAAGGCAGACGGAACGCTTCCAC
GCCCTTCCTTCATGCCCGACTGGGAATCGCGTTAATTATTATTGCTTCTT
TGCAGCCAGTGATTGCTTCCGTGGGAATCGTAGCCCAAATGCGTGTCAAC
CCCGTATTGGTATTAACTAACAAGCCTGATGCTCCCAAACTTATATTGAG
TCGAGCCACCAGAGCATGTCGTCTGTTACATCGAATCATCGGGGTAGCGG
TTCTCGCAATGGGTTGGTTGAATGTTACACTAGGATTGTTCTTAATTGTT
GCTCCCACCATTCTTTGGGTGCACTGGTTGGTGTATGTAATAATGCTACT
TGTTACAGCAGGATGGTTGGAACTAATGAGGAGAAAGCACGGCACAAGAG
CAATCACGAGAGCAACTTCACATCACAGAGCGAGTATTGAAAGACCTTCA
TCCGTACTCGGCAGAGTCATGCGATCCATTCAGGGGGAATCGACAGCTAA
ACTAAGACTGGGTGAGGATGGCAGTGAAGCGGCAGAAAGGATATCACAAT
CTGAAAGCATGAAGGAAGTCAGGCCTGAAGACGAAATAGGGCCCGAAAGG
ACCGCAACACCGAAACAGGCACGGGCTGGGAAATTCGTGGTTATTGAAGA
TTTTGTGCAGCCGGATATTGTTCGCCAAGTAGTGGAAGAGGAGAGGGCCC
AGCAACGTGCAGAGAAAGAAAAAGAAGAGCAGCTTGCGGAAGAAAACAGA
GCTCGAGAGAATGCTGCCGAGCATGACAGAGTTCAGGAAGAATTTGATGT
GTTTGGTTTTCCAAGATCATTATCGGAAGCAACCTCTAGGTATACCTATC
GCGATCCTGATGCGTACTAA

Coding sequence (CDS) from alignment at NODE_222_length_35706_cov_4.342356:27330..29699+

>Gcaud3000.t1 ID=Gcaud3000.t1|Name=Gcaud3000.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2370bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:27330..29699+ (Gracilaria caudata M_176_S67 male)
ATGACGATCAGTTCTTCTGCGAGCTGGTTTCTCATCTCCTTGTTTTTAGC
TTCACGTTCTGCATCTGCTCAACATCGATTTTCTCTCACTCCCCTGGTTA
CTGCGACAGCGAGGAATCCCTCACCTCGAAGCGATCATCTTTCGGTAGTT
GTAAACTCCGGGAGCGGTCCGCTCCTCATCATTCACGGTGGCAGAGACGT
ACATGGTGCAAAGTCTGACACTTGGACTTACATTGTCGCACGAAATGAAT
GGGGACTTCTTGCATCGGGTGCTCTGGGATCAAGTGAACGACCTCCTCCC
CTTTACGGTGCAGTTGGTGGATATCGCTTCGTGGATGGAGAAAACTCTCC
ATTTCTCTATGTTGCGTTAGGAACGAGTGATGGAGTGAGGTCATTGAATA
CAGATATGTGGGTTATGGAATTCCGGAACTTCACATGGCGACGCGTAACC
GTTGACGGTGAAAAGCCAGAACCTCGTTTCGGTGCGATTGGCAGTTTAGA
AAGGTTCAGCAAACCAGACGGAACTGTGCAGCCAGCCCTTATCATCAGTC
ATGGATATGGTAAAGACGGCCCTCTTAGCGATACATATAAATGTACGTTC
GATGAAAAGGATCCTTATCGAGCGAAATGGACAAGGCTGCGAAGGCCTGT
TTCTCAGTATTCAACTCGCAACCCGCATTCAATGTGGTATCAAGCAAGTA
CTTTCACTGCCAACCGTGACATCGTTGTCTTCGGTGGATGTTACGCGAGC
GAAGGTACGGGAGGAATATGTCCCAATAACGATGTATGGCTTCTCGAATA
TAAACATGAAGAAAACAACAACGCGGATGCTCTCCAGCCACTCCGAGGAC
CAAATTCGACTTCTTTGAAAGCAGAGACAGTGCGTTGGCAGATCCTGCCA
CGAGGACCAGCACCCAGGGTTGGAGCAGCAATGGCGCAGGGCCTTAATTC
TTTTGAAGGTGCCTACGAAAGTCGGTTAGGTATCGCTGTTTTGTACAGCG
GTTCCCAGGACACTACGTACTTGCCGTCAGACCACGTCATTTCTGCTCAT
AGGGTCGACGGGAGCGAAATTGATCTTATTTCCACTCAAGCGCGCACATG
GTTGAGAGAAGTTGTTAAGTTCGACGGACCCGAAGAACTACAAAAGACAG
CGTTTACGCCGCGGAAGGGGGCCTCTTTGGATATTGTCAGAAATAGAACC
GAAGATGATGATCTTGATATCCCGAACGAATTCTTTCTGTTCTTCGGCGG
CGAACTCGAAAACGGACAGTTTACCAATGACTTGATGAAGTTGTCATTCG
ATCCCTTTGTGGAATCTCTCTTAATTGAAGGTTCATCGCGTTACATATCC
CGCCCATTTGTTCATGGTTTACTGATGTTTATAGCGTTCGGGGTATTGAT
GAGCATTGGGTCGTTCGTTGCGAGATATATGAAGCATCCAAATGGACGAC
CAAAGTATTTCCTTGCTCATCTCCTCATTCAATCGCTCGGGCTCGTTCTC
AGCTGGGTTGGTGTTGCAGTAGCGATTCAAGGCAGACGGAACGCTTCCAC
GCCCTTCCTTCATGCCCGACTGGGAATCGCGTTAATTATTATTGCTTCTT
TGCAGCCAGTGATTGCTTCCGTGGGAATCGTAGCCCAAATGCGTGTCAAC
CCCGTATTGGTATTAACTAACAAGCCTGATGCTCCCAAACTTATATTGAG
TCGAGCCACCAGAGCATGTCGTCTGTTACATCGAATCATCGGGGTAGCGG
TTCTCGCAATGGGTTGGTTGAATGTTACACTAGGATTGTTCTTAATTGTT
GCTCCCACCATTCTTTGGGTGCACTGGTTGGTGTATGTAATAATGCTACT
TGTTACAGCAGGATGGTTGGAACTAATGAGGAGAAAGCACGGCACAAGAG
CAATCACGAGAGCAACTTCACATCACAGAGCGAGTATTGAAAGACCTTCA
TCCGTACTCGGCAGAGTCATGCGATCCATTCAGGGGGAATCGACAGCTAA
ACTAAGACTGGGTGAGGATGGCAGTGAAGCGGCAGAAAGGATATCACAAT
CTGAAAGCATGAAGGAAGTCAGGCCTGAAGACGAAATAGGGCCCGAAAGG
ACCGCAACACCGAAACAGGCACGGGCTGGGAAATTCGTGGTTATTGAAGA
TTTTGTGCAGCCGGATATTGTTCGCCAAGTAGTGGAAGAGGAGAGGGCCC
AGCAACGTGCAGAGAAAGAAAAAGAAGAGCAGCTTGCGGAAGAAAACAGA
GCTCGAGAGAATGCTGCCGAGCATGACAGAGTTCAGGAAGAATTTGATGT
GTTTGGTTTTCCAAGATCATTATCGGAAGCAACCTCTAGGTATACCTATC
GCGATCCTGATGCGTACTAA