Gcaud2999.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2999.t1
Unique Name	Gcaud2999.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	412

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_222_length_35706_cov_4.342356	contig	NODE_222_length_35706_cov_4.342356:21272..25675 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704079.1
PFAMs	Abhydrolase_1,Abhydrolase_6
Max annot lvl	2759\|Eukaryota
Evalue	1.24e-98
EggNOG OGs	COG0596@1\|root,KOG1454@2759\|Eukaryota
Description	regulation of endocannabinoid signaling pathway
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2999	Gcaud2999	Gracilaria caudata M_176_S67 male	gene	NODE_222_length_35706_cov_4.342356 21272..25675 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2999.t1	Gcaud2999.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_222_length_35706_cov_4.342356 21272..25675 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2999.t1.stop1	Gcaud2999.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_222_length_35706_cov_4.342356 21272..21274 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2999.t1.CDS1	Gcaud2999.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 21272..22227 -
Gcaud2999.t1.CDS2	Gcaud2999.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 25187..25341 -
Gcaud2999.t1.CDS3	Gcaud2999.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 25443..25465 -
Gcaud2999.t1.CDS4	Gcaud2999.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 25574..25675 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2999.t1.exon1	Gcaud2999.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 21272..22227 -
Gcaud2999.t1.exon2	Gcaud2999.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 25187..25341 -
Gcaud2999.t1.exon3	Gcaud2999.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 25443..25465 -
Gcaud2999.t1.exon4	Gcaud2999.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 25574..25675 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2999.t1.intron1	Gcaud2999.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_222_length_35706_cov_4.342356 22228..25186 -
Gcaud2999.t1.intron2	Gcaud2999.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_222_length_35706_cov_4.342356 25342..25442 -
Gcaud2999.t1.intron3	Gcaud2999.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_222_length_35706_cov_4.342356 25466..25573 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2999.t1.start1	Gcaud2999.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_222_length_35706_cov_4.342356 25673..25675 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_222_length_35706_cov_4.342356:21272..25675-
coding sequence from alignment at NODE_222_length_35706_cov_4.342356:21272..25675-

mRNA sequence

>Gcaud2999.t1 ID=Gcaud2999.t1|Name=Gcaud2999.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=412bp
MDCGLGATKSGKTPFPAHILGFVAYLMFVGSERRSQGSPSSYENWAKTTL
SSLGDLGYSFKLVIAAWPISLLAGVLSCIAASMGLRHKDVSDYKKVGYDT
QKPPGLQRYYETFTWRGYSINYRVEGSETSEYPVLIVHGFGASINHWRKN
IPAMVDTGKLRVYAIDLLGFGGSDKASPKEVQYGLPLWKDLVCDFMNAMN
EREQWSLIGNSIGSLVCLMAAKELGPDKIRACALMNCAGGLASFRYSELN
PIQAAVLWLFNTILFNPIVGPYLFENFRKRSTIANILKQVYIEEKAITGD
LLDILCEPAMDEGACDVFLAILNADSGPSPEELLPQLTWCPILVFWGDKD
PWTPLDKGFHPGIDFPKYHPCLDLEIIPNAGHCIHDECPEAVNKLLVPFL
LEPAFEEERGL*

spliced messenger RNA

>Gcaud2999.t1 ID=Gcaud2999.t1|Name=Gcaud2999.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:21272..25675- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTGTGGATTGGGTGCCACAAAGAGCGGAAAAACGCCATTTCCTGC
GCATATATTGGGTTTCGTTGCCTATCTGATGTTTGTTGGATCAGAAAGAC
GATCACAGGGTTCTCCATCCAGTTACGAAAACTGGGCAAAGACAACCCTC
TCGTCACTTGGAGACCTAGGATACAGTTTTAAGTTGGTCATTGCTGCATG
GCCAATAAGCCTGCTGGCAGGAGTGTTGTCCTGTATAGCAGCGAGTATGG
GACTTCGACACAAAGATGTCTCAGACTATAAAAAAGTAGGCTATGATACT
CAGAAACCACCAGGATTGCAAAGATATTACGAGACCTTCACATGGCGAGG
GTATTCGATCAACTATCGGGTAGAGGGTTCTGAAACAAGTGAGTATCCAG
TTCTTATCGTTCATGGATTTGGAGCTTCCATCAACCATTGGCGCAAGAAC
ATCCCAGCCATGGTTGACACAGGGAAGCTACGCGTATACGCTATTGATTT
GCTCGGTTTTGGAGGTTCTGACAAAGCAAGCCCAAAGGAGGTGCAATACG
GCTTGCCATTATGGAAGGACTTGGTGTGTGACTTTATGAATGCTATGAAT
GAAAGAGAGCAATGGTCTTTAATTGGGAATTCAATTGGGTCGCTTGTATG
TCTAATGGCCGCCAAGGAGCTTGGTCCAGACAAGATCCGCGCTTGCGCAT
TAATGAATTGCGCTGGGGGTCTCGCAAGCTTCCGATACTCAGAACTAAAT
CCAATCCAAGCGGCGGTACTATGGCTGTTCAATACAATCCTATTCAACCC
AATTGTCGGGCCATATCTTTTCGAAAACTTTCGGAAGCGTTCGACCATTG
CTAACATTCTGAAACAAGTATACATTGAAGAAAAAGCCATCACCGGTGAC
TTGTTGGATATTTTATGCGAGCCTGCGATGGATGAGGGCGCGTGTGACGT
CTTTCTAGCAATCTTGAACGCAGATTCGGGCCCTTCGCCAGAGGAGCTGT
TACCACAGTTGACATGGTGCCCTATTTTAGTCTTCTGGGGGGACAAGGAC
CCCTGGACGCCATTAGACAAAGGGTTTCATCCTGGCATTGACTTCCCAAA
ATATCATCCGTGCTTAGACCTTGAAATAATCCCAAATGCAGGACATTGCA
TTCACGATGAATGTCCTGAAGCTGTTAACAAGTTGTTAGTGCCATTTCTA
TTGGAACCAGCTTTTGAAGAGGAGCGGGGTTTGTAA

protein sequence of Gcaud2999.t1

>Gcaud2999.t1 ID=Gcaud2999.t1|Name=Gcaud2999.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=412bp
MDCGLGATKSGKTPFPAHILGFVAYLMFVGSERRSQGSPSSYENWAKTTL
SSLGDLGYSFKLVIAAWPISLLAGVLSCIAASMGLRHKDVSDYKKVGYDT
QKPPGLQRYYETFTWRGYSINYRVEGSETSEYPVLIVHGFGASINHWRKN
IPAMVDTGKLRVYAIDLLGFGGSDKASPKEVQYGLPLWKDLVCDFMNAMN
EREQWSLIGNSIGSLVCLMAAKELGPDKIRACALMNCAGGLASFRYSELN
PIQAAVLWLFNTILFNPIVGPYLFENFRKRSTIANILKQVYIEEKAITGD
LLDILCEPAMDEGACDVFLAILNADSGPSPEELLPQLTWCPILVFWGDKD
PWTPLDKGFHPGIDFPKYHPCLDLEIIPNAGHCIHDECPEAVNKLLVPFL
LEPAFEEERGL*

mRNA from alignment at NODE_222_length_35706_cov_4.342356:21272..25675-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2999.t1 ID=Gcaud2999.t1|Name=Gcaud2999.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=4404bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:21272..25675- (Gracilaria caudata M_176_S67 male)
ATGGACTGTGGATTGGGTGCCACAAAGAGCGGAAAAACGCCATTTCCTGC
GCATATATTGGGTTTCGTTGCCTATCTGATGTTTGTTGGATCAGAAAGAC
GAGTGATTCCAGCACAAAGACATGCATGAAACATCGAGTGAACCCTGTGG
TTAACTGTACAGCGTATCAGGCAGTACGAGGATTGCTCTTAGTTGCCCTA
TTATTCACAGTCACAGGGTTCTCCATCCAGTTAGTGAGTTTGATTTCCAT
CAATAGGTCCTTGGCAATGTTCGCAGGCGTCATTCTCTTCGTTTCCGGCC
TACTCACGATGACTGCATTCGCTGTTTTCTACAGCGAAAACTGGGCAAAG
ACAACCCTCTCGTCACTTGGAGACCTAGGATACAGTTTTAAGTTGGTCAT
TGCTGCATGGCCAATAAGCCTGCTGGCAGGAGTGTTGTCCTGTATAGCAG
CGAGTATGGGACTTCGACACAAAGATGTCTCAGACTATAGTGCAAGCAAT
TACTGACAACGGCAATCAAGTCGGTCCGAAGACATGCAAACAAAAGCTAG
AAAGATAAAGAACACCTCTGCTTTATCTGCTCGTTGTGGATTTTGAAACG
AAGCCACATGAAGAACTGTGTGCAACTAGAAAAACCGAAGAGGTGGCTGG
CTTCCTGTTTTGTTCGACGTTACCACGTTGCCATGGCCACATTGCCGACT
GTGCCAGAAGTCCGGTTTGGTCCAGTGCATTCCAAGTCATTATGCTGATG
TGACTACTGCTTTTTAAGAGCTTGTAAAGCATTTGAAAGAGAGAAACATG
TTCCTCTGTCCCTTCTTAGTGTTTTAAGAGAATCATACAGACTTTGGAGT
AGAACCAGGTGAGGCATTGCGCAAATACACTATGCCTGGCTTCCAATCTC
TCCCTCCATGGCCTTGCATCAACTATGAAACTTTCGCCTGTTACTTCGTC
TCCATATTGTAGACTTTTGCTTTGCATCAAATCTACGAGTAGTGATTTCC
CCTAAGAAATTACATTCAGATGGCTACGGCTACAGAGAATGCCGAAACAA
GTTCTGGTCATCGTGTTAGAGGGAACCTTTAAAGACTTCAGCCTACAGCC
CTCCGTCTTCTCGCCATTTTCTTCTGGTTAATGATATTCCATATGTAGAA
CTTGAAGGCGACCCGGGAGGTCGTTAAACTCGTCAAAGCGATCGGTCCGC
TTGCTGATCGCCCTCGCAGACCTGGGTGGCACGTCGCTAAAATGCCCCCC
GTCTAGCTGCACGAACGCAGTAGGTCGCGAGCCGGTCATCGAAGGAAGAT
CCTACCGCCGTTTCCCTGAATTTTTCCCTCAGAAGGAAGAGCTCCAAAGG
GGCCATTGGACGGGGGCTTTCCAGGGTTTTCTCGGAGGGACCGGGGTTGG
ATGACGGTGAAGGGCTACGGACTGGTCCTTGCGCCTGATCTCGCCGATTG
ATAAGAGGGTTGGGTCGTAAAGACGCTGCTCATGGTTTCTTGAGTGGCCA
ACGTGGTACAAGCGGGAGCGCCAAGTCGTGGTGTGCCCCTCTGCCGGCGA
TCTCTAGGAGATGGGTGAAGAGGTTCATGAAGGCGATAAGCGTCGGTAGC
GAAATGCCCCGCGGTCGAAAACACCTAAGAGATCTAATACTTTCTCGTCG
TAGCCCAGTGCGTGTAGCATAGCTACTTTTCGGTAGTTGATGGCTGCAGG
CTAGAAGTGTTATAGGTTGTTGGGTCTTTAGCAAACCCACGCGTACGAGG
AATTAGCGTGCGCGTTTTCATAAACGAGAGAGAGAACGTCCATTACATTT
TGAGGAATAAAAGGCAGCCTAATGTAGCGTGGGTGCCCAGTCATTGTGGA
GTGGAACAAAACGAGCGTGTCGACCGGCTTGCGAAAACGGGCCTTGAGTT
GCCGCTTGTGCTGCAGTTAGCGGTTCCGGTTGATTTCGCAGATGTCAAGA
CACAGCTATCGCAAAAGATTCGCTCTAACAGCATAGCTCAGGAGATCCTT
GCCCAGTTTCCGGACGAAAAAGAAGCTCGAAGCGCCGAGGTGGCTTCAGC
GCAGTTTGCCACTGGTCATGTTCGTAAACTACACCCTGTAGCAACGTACA
TGGATAAGAAAGTCAACCGCTGCGAATGCGGATCCGGAGTTAAAAAAACG
TCGGTCCCGTTTTGTTCAGGTCTCCGTTGACAAACGCTTCACGACGCGCT
GCTCTCCCCGCGCCGCGCGATCGAGAAGGCAAGGCTCTGTTAGAAGAGAT
AAGGCAGTGGCCGTCACAGTTTTTGGCTTTTTTTAGGAGAGAAAACTATC
TGTAGATTGTTTTCCTGCAGCCTCGAAATAAGTGCCTGAAGATAGAGGGG
TCAGAACGACATCTTAGCTTCTCTTGACTTTGATAGTCACAGCCGTTGTG
ACCAAACAAGACTGGCGTAGATGGATGAACGGGTCATCATGAAACTCTGA
ACCCCATCTACACATCTAGGTCATCACACCACATTACTTCCATGATGTTG
CGGTTTAACCCTCTGGGCATGATGCTCGAGAACAACAGGCCGAGGAGGAA
CCCTCTTGAAACAAGGGTGCTTCTTCACGTTTCCCAACATGGGGGGGAAT
CGATACAAAAGACTGAACCTCTCAGTTTGCTCGTCTCGTCTTGATGCATG
TTTACAGCTCAGTAATCGTAACGGTTCGAGAAGTGACGAAATGGGTCTTG
GAGCAAAGCTTAAAAGCAATGTAGAGTTCAGGGTTCGGCACTTCTATTGG
GTGTTTCTTGGAGCTTGGATAAGTAGCTTACATGGCTGGCCCACATCGCC
ACTGGAGATCATGTGCGTTTCATACCAAACTGAAGGCTGAGGGTTACTGA
CCGTAAGTTACCGTCGCCGATGAGAGATACCCAGCACTCACACGAATGTG
AAGATGCAAAGCGGCATGTTGATCTCAAAAATATCTGCTCAGACCAATAC
CGCTCTGTGGATATCCAAGGGTATCATAGAGCTCTCTCTACTACGTTCGG
TAGCTACTCTTTGTTTTGCAGTCTGTACATCGTGAAGATTGCTGAAGTTT
CCGTCTGGGAAAGCCACGGCAAAGAGAAGGGGTCGTCACACTTCCGACGG
GTGAGTTCGTCTCCCAGACCTGTTGGGGATGCCATCCAACTTAACGTTCT
CGAAGACTGAAAAACGTTTATATTGACTGCCGAACGAGAATGGCCCAACC
GTGCCTGAAGAGAACATCACACATTTCATGCCGCTTCTCGCAACCCGCAT
TTATGCCCCAACGCGAAAGACAGGAATCACTTTGTTTCCAACCAGCAGCA
GCGTCGTCGTTTTCGCTCTCACCATTGCGTTCTTCGCCGTTCACTCCAGG
CTTTAACTCTCACTCATTTTCAACCTCGCGTTGTACCCATGCAAATGGCG
TATATGTCAAACGCTTGCGCAGGGTAATAACTACTGCTTCAACAACAGAA
AAAGTAGGCTATGATACTCAGAAACCACCAGGATTGCAAAGATATTACGA
GACCTTCACATGGCGAGGGTATTCGATCAACTATCGGGTAGAGGGTTCTG
AAACAAGTGAGTATCCAGTTCTTATCGTTCATGGATTTGGAGCTTCCATC
AACCATTGGCGCAAGAACATCCCAGCCATGGTTGACACAGGGAAGCTACG
CGTATACGCTATTGATTTGCTCGGTTTTGGAGGTTCTGACAAAGCAAGCC
CAAAGGAGGTGCAATACGGCTTGCCATTATGGAAGGACTTGGTGTGTGAC
TTTATGAATGCTATGAATGAAAGAGAGCAATGGTCTTTAATTGGGAATTC
AATTGGGTCGCTTGTATGTCTAATGGCCGCCAAGGAGCTTGGTCCAGACA
AGATCCGCGCTTGCGCATTAATGAATTGCGCTGGGGGTCTCGCAAGCTTC
CGATACTCAGAACTAAATCCAATCCAAGCGGCGGTACTATGGCTGTTCAA
TACAATCCTATTCAACCCAATTGTCGGGCCATATCTTTTCGAAAACTTTC
GGAAGCGTTCGACCATTGCTAACATTCTGAAACAAGTATACATTGAAGAA
AAAGCCATCACCGGTGACTTGTTGGATATTTTATGCGAGCCTGCGATGGA
TGAGGGCGCGTGTGACGTCTTTCTAGCAATCTTGAACGCAGATTCGGGCC
CTTCGCCAGAGGAGCTGTTACCACAGTTGACATGGTGCCCTATTTTAGTC
TTCTGGGGGGACAAGGACCCCTGGACGCCATTAGACAAAGGGTTTCATCC
TGGCATTGACTTCCCAAAATATCATCCGTGCTTAGACCTTGAAATAATCC
CAAATGCAGGACATTGCATTCACGATGAATGTCCTGAAGCTGTTAACAAG
TTGTTAGTGCCATTTCTATTGGAACCAGCTTTTGAAGAGGAGCGGGGTTT
GTAA

Coding sequence (CDS) from alignment at NODE_222_length_35706_cov_4.342356:21272..25675-

>Gcaud2999.t1 ID=Gcaud2999.t1|Name=Gcaud2999.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1236bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:21272..25675- (Gracilaria caudata M_176_S67 male)
ATGGACTGTGGATTGGGTGCCACAAAGAGCGGAAAAACGCCATTTCCTGC
GCATATATTGGGTTTCGTTGCCTATCTGATGTTTGTTGGATCAGAAAGAC
GATCACAGGGTTCTCCATCCAGTTACGAAAACTGGGCAAAGACAACCCTC
TCGTCACTTGGAGACCTAGGATACAGTTTTAAGTTGGTCATTGCTGCATG
GCCAATAAGCCTGCTGGCAGGAGTGTTGTCCTGTATAGCAGCGAGTATGG
GACTTCGACACAAAGATGTCTCAGACTATAAAAAAGTAGGCTATGATACT
CAGAAACCACCAGGATTGCAAAGATATTACGAGACCTTCACATGGCGAGG
GTATTCGATCAACTATCGGGTAGAGGGTTCTGAAACAAGTGAGTATCCAG
TTCTTATCGTTCATGGATTTGGAGCTTCCATCAACCATTGGCGCAAGAAC
ATCCCAGCCATGGTTGACACAGGGAAGCTACGCGTATACGCTATTGATTT
GCTCGGTTTTGGAGGTTCTGACAAAGCAAGCCCAAAGGAGGTGCAATACG
GCTTGCCATTATGGAAGGACTTGGTGTGTGACTTTATGAATGCTATGAAT
GAAAGAGAGCAATGGTCTTTAATTGGGAATTCAATTGGGTCGCTTGTATG
TCTAATGGCCGCCAAGGAGCTTGGTCCAGACAAGATCCGCGCTTGCGCAT
TAATGAATTGCGCTGGGGGTCTCGCAAGCTTCCGATACTCAGAACTAAAT
CCAATCCAAGCGGCGGTACTATGGCTGTTCAATACAATCCTATTCAACCC
AATTGTCGGGCCATATCTTTTCGAAAACTTTCGGAAGCGTTCGACCATTG
CTAACATTCTGAAACAAGTATACATTGAAGAAAAAGCCATCACCGGTGAC
TTGTTGGATATTTTATGCGAGCCTGCGATGGATGAGGGCGCGTGTGACGT
CTTTCTAGCAATCTTGAACGCAGATTCGGGCCCTTCGCCAGAGGAGCTGT
TACCACAGTTGACATGGTGCCCTATTTTAGTCTTCTGGGGGGACAAGGAC
CCCTGGACGCCATTAGACAAAGGGTTTCATCCTGGCATTGACTTCCCAAA
ATATCATCCGTGCTTAGACCTTGAAATAATCCCAAATGCAGGACATTGCA
TTCACGATGAATGTCCTGAAGCTGTTAACAAGTTGTTAGTGCCATTTCTA
TTGGAACCAGCTTTTGAAGAGGAGCGGGGTTTGTAA