Gcaud2997.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2997.t1
Unique Name	Gcaud2997.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	532

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_222_length_35706_cov_4.342356	contig	NODE_222_length_35706_cov_4.342356:15267..16862 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38833.XP_003060326.1
PFAMs	Exo_endo_phos
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K18764,ko:K19612
Evalue	4.97e-92
EggNOG OGs	COG5239@1\|root,KOG0620@2759\|Eukaryota
EC	3.1.13.4
Description	poly(A)-specific ribonuclease activity
COG category	A
BRITE	ko00000,ko01000,ko03019,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2997	Gcaud2997	Gracilaria caudata M_176_S67 male	gene	NODE_222_length_35706_cov_4.342356 15267..16862 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2997.t1.stop1	Gcaud2997.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_222_length_35706_cov_4.342356 15267..15269 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2997.t1.CDS1	Gcaud2997.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 15267..16862 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2997.t1.exon1	Gcaud2997.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 15267..16862 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2997.t1.start1	Gcaud2997.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_222_length_35706_cov_4.342356 16860..16862 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2997.t1	Gcaud2997.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_222_length_35706_cov_4.342356 15267..16862 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_222_length_35706_cov_4.342356:15267..16862-
coding sequence from alignment at NODE_222_length_35706_cov_4.342356:15267..16862-

mRNA sequence

>Gcaud2997.t1 ID=Gcaud2997.t1|Name=Gcaud2997.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=532bp
MRFSNATRSDTLPLPATTKHGGTPLVSKRPKHLVFAHQPHVAFSDRLRTS
TASNAATKSTTMLTTRARAAFVLSPTPLRFSRNTFQAATPSFPQWKPTPW
RLFSNLRPFQRSPSMSTSPKPQRAGPGNNGPAKGNGPSDFGEGELFASSP
ELEQLAMKSSDAPILTRIVSYNVLSSSLAGDSHFPDCEPVNLNAKTRLKR
LLIKLEGPVASRSIICLQEVSLTWSGPLHTFFANRGFYLLLASHGSYFNG
YMGEGLAFPLDLYEAVDLHIERLTDFIRWPQGPKLVGVPGMFSEVRSRLV
KAIQALAGFPKPSRYAKREPWAHARGRHNRFIFARLRSRTNGAKICVGTY
HMPCIFWSPPVMMIHSALVVSRFQKLCGDDYGVLAGDFNIKPTDESYAMI
LRGTIDEEHRDFPPNAPDGSPASSWFPKLLAPMKSAYREVLGDEPDFTNY
AKVENQPMFIETLDYLFCTSDVDVVDVIRLPKRDVVQGPYPSATEPSDHV
MIGATLRLPAPSQQAERKKAGVSVGATQDGS*

spliced messenger RNA

>Gcaud2997.t1 ID=Gcaud2997.t1|Name=Gcaud2997.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:15267..16862- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCTCAAATGCAACGCGCTCAGACACGCTTCCGTTGCCGGCCAC
GACGAAGCATGGAGGTACTCCTCTAGTCTCTAAGCGACCGAAACATCTTG
TGTTTGCTCATCAACCTCACGTCGCGTTTTCGGATCGTCTACGTACTTCA
ACTGCGTCTAACGCCGCAACTAAGTCAACAACGATGCTCACCACGCGGGC
AAGGGCTGCGTTTGTATTGTCTCCCACCCCTCTACGTTTTTCTCGCAATA
CATTCCAGGCCGCCACCCCCTCATTCCCACAGTGGAAACCCACGCCATGG
CGGCTATTTTCCAACCTGCGTCCTTTCCAGAGGTCACCATCTATGTCAAC
ATCCCCCAAACCGCAGAGGGCCGGCCCTGGAAATAATGGTCCTGCAAAAG
GGAACGGTCCGTCTGATTTTGGCGAAGGCGAGCTTTTCGCATCTTCTCCA
GAGTTGGAGCAACTTGCCATGAAATCTTCGGACGCTCCTATTCTCACGCG
CATAGTATCGTATAATGTGCTTTCATCGTCTCTCGCTGGCGATTCTCACT
TTCCGGACTGTGAGCCTGTCAATTTGAACGCGAAAACACGCCTGAAGCGC
CTTCTTATCAAGTTGGAAGGGCCTGTTGCTTCCAGGTCTATCATTTGCTT
GCAAGAGGTTTCGTTGACATGGAGCGGTCCGCTGCACACATTTTTCGCAA
ACCGTGGCTTTTACCTTTTGCTAGCCTCCCATGGTTCCTACTTTAATGGA
TACATGGGAGAGGGGTTGGCTTTTCCACTTGATTTGTACGAAGCGGTTGA
TCTGCATATCGAACGACTCACGGACTTTATTAGATGGCCGCAAGGTCCAA
AACTGGTCGGTGTGCCAGGCATGTTTTCGGAAGTGCGCTCGCGATTAGTC
AAGGCAATCCAGGCTTTGGCCGGTTTCCCAAAACCATCCAGATATGCAAA
GAGGGAACCATGGGCTCACGCAAGGGGGCGACATAATCGCTTTATCTTTG
CGCGGTTGCGCTCCCGCACCAACGGGGCTAAGATCTGCGTGGGTACATAT
CATATGCCCTGCATTTTCTGGTCACCACCTGTGATGATGATACATTCGGC
GTTGGTTGTAAGTCGATTTCAGAAACTATGCGGTGATGACTACGGAGTAT
TAGCGGGAGACTTTAACATAAAGCCGACCGATGAGTCGTATGCGATGATT
CTACGAGGGACTATTGATGAAGAACACCGGGACTTTCCTCCGAATGCACC
AGACGGGTCACCTGCGTCTTCATGGTTCCCAAAGTTGTTGGCACCTATGA
AGAGCGCATATCGTGAAGTTCTAGGAGACGAACCAGATTTCACAAACTAC
GCGAAGGTTGAAAATCAACCTATGTTTATAGAAACGCTTGACTACCTGTT
TTGCACGTCGGATGTGGACGTTGTTGACGTGATCAGATTGCCGAAGAGAG
ATGTTGTACAGGGTCCGTATCCCAGTGCCACTGAACCGTCCGACCACGTG
ATGATCGGGGCTACGCTGAGACTGCCAGCGCCATCTCAACAGGCCGAGAG
AAAGAAGGCGGGCGTGAGCGTTGGCGCTACTCAGGATGGATCTTGA

protein sequence of Gcaud2997.t1

>Gcaud2997.t1 ID=Gcaud2997.t1|Name=Gcaud2997.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=532bp
MRFSNATRSDTLPLPATTKHGGTPLVSKRPKHLVFAHQPHVAFSDRLRTS
TASNAATKSTTMLTTRARAAFVLSPTPLRFSRNTFQAATPSFPQWKPTPW
RLFSNLRPFQRSPSMSTSPKPQRAGPGNNGPAKGNGPSDFGEGELFASSP
ELEQLAMKSSDAPILTRIVSYNVLSSSLAGDSHFPDCEPVNLNAKTRLKR
LLIKLEGPVASRSIICLQEVSLTWSGPLHTFFANRGFYLLLASHGSYFNG
YMGEGLAFPLDLYEAVDLHIERLTDFIRWPQGPKLVGVPGMFSEVRSRLV
KAIQALAGFPKPSRYAKREPWAHARGRHNRFIFARLRSRTNGAKICVGTY
HMPCIFWSPPVMMIHSALVVSRFQKLCGDDYGVLAGDFNIKPTDESYAMI
LRGTIDEEHRDFPPNAPDGSPASSWFPKLLAPMKSAYREVLGDEPDFTNY
AKVENQPMFIETLDYLFCTSDVDVVDVIRLPKRDVVQGPYPSATEPSDHV
MIGATLRLPAPSQQAERKKAGVSVGATQDGS*

mRNA from alignment at NODE_222_length_35706_cov_4.342356:15267..16862-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2997.t1 ID=Gcaud2997.t1|Name=Gcaud2997.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:15267..16862- (Gracilaria caudata M_176_S67 male)
ATGCGCTTCTCAAATGCAACGCGCTCAGACACGCTTCCGTTGCCGGCCAC
GACGAAGCATGGAGGTACTCCTCTAGTCTCTAAGCGACCGAAACATCTTG
TGTTTGCTCATCAACCTCACGTCGCGTTTTCGGATCGTCTACGTACTTCA
ACTGCGTCTAACGCCGCAACTAAGTCAACAACGATGCTCACCACGCGGGC
AAGGGCTGCGTTTGTATTGTCTCCCACCCCTCTACGTTTTTCTCGCAATA
CATTCCAGGCCGCCACCCCCTCATTCCCACAGTGGAAACCCACGCCATGG
CGGCTATTTTCCAACCTGCGTCCTTTCCAGAGGTCACCATCTATGTCAAC
ATCCCCCAAACCGCAGAGGGCCGGCCCTGGAAATAATGGTCCTGCAAAAG
GGAACGGTCCGTCTGATTTTGGCGAAGGCGAGCTTTTCGCATCTTCTCCA
GAGTTGGAGCAACTTGCCATGAAATCTTCGGACGCTCCTATTCTCACGCG
CATAGTATCGTATAATGTGCTTTCATCGTCTCTCGCTGGCGATTCTCACT
TTCCGGACTGTGAGCCTGTCAATTTGAACGCGAAAACACGCCTGAAGCGC
CTTCTTATCAAGTTGGAAGGGCCTGTTGCTTCCAGGTCTATCATTTGCTT
GCAAGAGGTTTCGTTGACATGGAGCGGTCCGCTGCACACATTTTTCGCAA
ACCGTGGCTTTTACCTTTTGCTAGCCTCCCATGGTTCCTACTTTAATGGA
TACATGGGAGAGGGGTTGGCTTTTCCACTTGATTTGTACGAAGCGGTTGA
TCTGCATATCGAACGACTCACGGACTTTATTAGATGGCCGCAAGGTCCAA
AACTGGTCGGTGTGCCAGGCATGTTTTCGGAAGTGCGCTCGCGATTAGTC
AAGGCAATCCAGGCTTTGGCCGGTTTCCCAAAACCATCCAGATATGCAAA
GAGGGAACCATGGGCTCACGCAAGGGGGCGACATAATCGCTTTATCTTTG
CGCGGTTGCGCTCCCGCACCAACGGGGCTAAGATCTGCGTGGGTACATAT
CATATGCCCTGCATTTTCTGGTCACCACCTGTGATGATGATACATTCGGC
GTTGGTTGTAAGTCGATTTCAGAAACTATGCGGTGATGACTACGGAGTAT
TAGCGGGAGACTTTAACATAAAGCCGACCGATGAGTCGTATGCGATGATT
CTACGAGGGACTATTGATGAAGAACACCGGGACTTTCCTCCGAATGCACC
AGACGGGTCACCTGCGTCTTCATGGTTCCCAAAGTTGTTGGCACCTATGA
AGAGCGCATATCGTGAAGTTCTAGGAGACGAACCAGATTTCACAAACTAC
GCGAAGGTTGAAAATCAACCTATGTTTATAGAAACGCTTGACTACCTGTT
TTGCACGTCGGATGTGGACGTTGTTGACGTGATCAGATTGCCGAAGAGAG
ATGTTGTACAGGGTCCGTATCCCAGTGCCACTGAACCGTCCGACCACGTG
ATGATCGGGGCTACGCTGAGACTGCCAGCGCCATCTCAACAGGCCGAGAG
AAAGAAGGCGGGCGTGAGCGTTGGCGCTACTCAGGATGGATCTTGA

Coding sequence (CDS) from alignment at NODE_222_length_35706_cov_4.342356:15267..16862-

>Gcaud2997.t1 ID=Gcaud2997.t1|Name=Gcaud2997.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1596bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:15267..16862- (Gracilaria caudata M_176_S67 male)
ATGCGCTTCTCAAATGCAACGCGCTCAGACACGCTTCCGTTGCCGGCCAC
GACGAAGCATGGAGGTACTCCTCTAGTCTCTAAGCGACCGAAACATCTTG
TGTTTGCTCATCAACCTCACGTCGCGTTTTCGGATCGTCTACGTACTTCA
ACTGCGTCTAACGCCGCAACTAAGTCAACAACGATGCTCACCACGCGGGC
AAGGGCTGCGTTTGTATTGTCTCCCACCCCTCTACGTTTTTCTCGCAATA
CATTCCAGGCCGCCACCCCCTCATTCCCACAGTGGAAACCCACGCCATGG
CGGCTATTTTCCAACCTGCGTCCTTTCCAGAGGTCACCATCTATGTCAAC
ATCCCCCAAACCGCAGAGGGCCGGCCCTGGAAATAATGGTCCTGCAAAAG
GGAACGGTCCGTCTGATTTTGGCGAAGGCGAGCTTTTCGCATCTTCTCCA
GAGTTGGAGCAACTTGCCATGAAATCTTCGGACGCTCCTATTCTCACGCG
CATAGTATCGTATAATGTGCTTTCATCGTCTCTCGCTGGCGATTCTCACT
TTCCGGACTGTGAGCCTGTCAATTTGAACGCGAAAACACGCCTGAAGCGC
CTTCTTATCAAGTTGGAAGGGCCTGTTGCTTCCAGGTCTATCATTTGCTT
GCAAGAGGTTTCGTTGACATGGAGCGGTCCGCTGCACACATTTTTCGCAA
ACCGTGGCTTTTACCTTTTGCTAGCCTCCCATGGTTCCTACTTTAATGGA
TACATGGGAGAGGGGTTGGCTTTTCCACTTGATTTGTACGAAGCGGTTGA
TCTGCATATCGAACGACTCACGGACTTTATTAGATGGCCGCAAGGTCCAA
AACTGGTCGGTGTGCCAGGCATGTTTTCGGAAGTGCGCTCGCGATTAGTC
AAGGCAATCCAGGCTTTGGCCGGTTTCCCAAAACCATCCAGATATGCAAA
GAGGGAACCATGGGCTCACGCAAGGGGGCGACATAATCGCTTTATCTTTG
CGCGGTTGCGCTCCCGCACCAACGGGGCTAAGATCTGCGTGGGTACATAT
CATATGCCCTGCATTTTCTGGTCACCACCTGTGATGATGATACATTCGGC
GTTGGTTGTAAGTCGATTTCAGAAACTATGCGGTGATGACTACGGAGTAT
TAGCGGGAGACTTTAACATAAAGCCGACCGATGAGTCGTATGCGATGATT
CTACGAGGGACTATTGATGAAGAACACCGGGACTTTCCTCCGAATGCACC
AGACGGGTCACCTGCGTCTTCATGGTTCCCAAAGTTGTTGGCACCTATGA
AGAGCGCATATCGTGAAGTTCTAGGAGACGAACCAGATTTCACAAACTAC
GCGAAGGTTGAAAATCAACCTATGTTTATAGAAACGCTTGACTACCTGTT
TTGCACGTCGGATGTGGACGTTGTTGACGTGATCAGATTGCCGAAGAGAG
ATGTTGTACAGGGTCCGTATCCCAGTGCCACTGAACCGTCCGACCACGTG
ATGATCGGGGCTACGCTGAGACTGCCAGCGCCATCTCAACAGGCCGAGAG
AAAGAAGGCGGGCGTGAGCGTTGGCGCTACTCAGGATGGATCTTGA