Gcaud2995.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2995.t1
Unique Name	Gcaud2995.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	302

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_222_length_35706_cov_4.342356	contig	NODE_222_length_35706_cov_4.342356:10366..11271 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2995	Gcaud2995	Gracilaria caudata M_176_S67 male	gene	NODE_222_length_35706_cov_4.342356 10366..11271 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2995.t1.start1	Gcaud2995.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_222_length_35706_cov_4.342356 10366..10368 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2995.t1.CDS1	Gcaud2995.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 10366..11271 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2995.t1.exon1	Gcaud2995.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 10366..11271 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2995.t1.stop1	Gcaud2995.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_222_length_35706_cov_4.342356 11269..11271 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2995.t1	Gcaud2995.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_222_length_35706_cov_4.342356 10366..11271 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_222_length_35706_cov_4.342356:10366..11271+
coding sequence from alignment at NODE_222_length_35706_cov_4.342356:10366..11271+

mRNA sequence

>Gcaud2995.t1 ID=Gcaud2995.t1|Name=Gcaud2995.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=302bp
MESTHPLLHPASPDPSRPIADESPPFPFQNTQNIGQIWTELASITVSAFT
PQLISRLRTFISHTPCFELDNHLQMLGAIVVRHVTLCLSDPDRQTAPLSR
IQSQPVLSRPQTHAKRRSYRDLAYHAVRINRIVPQSQPLQVEPTSSSPSS
STTNIPRRLSIQKASSLIDVAQTRPSTTIRGCQTSSASTKENDNIAINQP
SQLSTFPSHTNQSVALREETFNSRSPNRAQVFPRADVTTSIESASMRKVT
SPTSRQKVVAQPQNLSEYANRFKNDSRTAAPISRLVQMRKQRAEKKRHNL
K*

spliced messenger RNA

>Gcaud2995.t1 ID=Gcaud2995.t1|Name=Gcaud2995.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=906bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:10366..11271+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCCACTCACCCGCTTCTACACCCTGCGTCGCCCGACCCATCGCG
CCCCATTGCCGATGAATCACCCCCCTTTCCCTTTCAAAACACCCAGAACA
TCGGCCAAATCTGGACCGAACTCGCCAGTATAACCGTGTCCGCCTTCACC
CCGCAGCTCATCTCCCGTCTTCGAACCTTCATCTCGCACACCCCATGTTT
CGAACTAGACAACCATTTACAAATGCTCGGTGCCATCGTCGTGCGTCACG
TCACTCTATGTCTGTCCGACCCGGACCGACAAACCGCCCCCCTGTCTCGC
ATCCAATCGCAGCCGGTCTTATCTCGACCTCAAACGCATGCTAAGCGACG
CAGCTACAGGGATCTTGCGTATCATGCTGTGCGTATCAATCGAATTGTGC
CTCAGTCTCAACCTCTTCAAGTGGAGCCCACGTCGTCATCGCCATCATCG
TCAACCACGAACATTCCTCGCCGACTGTCCATTCAAAAAGCAAGCAGTCT
GATAGATGTTGCCCAAACACGCCCCTCAACCACAATTCGCGGCTGTCAAA
CCTCCTCCGCCTCGACGAAAGAGAATGATAATATTGCTATCAATCAACCA
TCACAATTGTCAACCTTTCCTTCCCACACCAATCAGTCGGTTGCACTCCG
CGAAGAAACCTTCAACTCACGTTCCCCAAACCGAGCACAAGTGTTTCCTA
GGGCCGATGTCACCACCAGCATTGAAAGCGCTTCAATGCGCAAAGTCACC
TCTCCAACATCTCGTCAAAAAGTGGTCGCACAACCTCAGAATCTATCCGA
GTATGCCAACAGATTCAAAAACGATTCGAGGACCGCGGCGCCCATAAGTC
GCCTGGTTCAAATGCGAAAACAACGCGCTGAGAAGAAGAGACACAACCTC
AAATAG

protein sequence of Gcaud2995.t1

>Gcaud2995.t1 ID=Gcaud2995.t1|Name=Gcaud2995.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=302bp
MESTHPLLHPASPDPSRPIADESPPFPFQNTQNIGQIWTELASITVSAFT
PQLISRLRTFISHTPCFELDNHLQMLGAIVVRHVTLCLSDPDRQTAPLSR
IQSQPVLSRPQTHAKRRSYRDLAYHAVRINRIVPQSQPLQVEPTSSSPSS
STTNIPRRLSIQKASSLIDVAQTRPSTTIRGCQTSSASTKENDNIAINQP
SQLSTFPSHTNQSVALREETFNSRSPNRAQVFPRADVTTSIESASMRKVT
SPTSRQKVVAQPQNLSEYANRFKNDSRTAAPISRLVQMRKQRAEKKRHNL
K*

mRNA from alignment at NODE_222_length_35706_cov_4.342356:10366..11271+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2995.t1 ID=Gcaud2995.t1|Name=Gcaud2995.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=906bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:10366..11271+ (Gracilaria caudata M_176_S67 male)
ATGGAGTCCACTCACCCGCTTCTACACCCTGCGTCGCCCGACCCATCGCG
CCCCATTGCCGATGAATCACCCCCCTTTCCCTTTCAAAACACCCAGAACA
TCGGCCAAATCTGGACCGAACTCGCCAGTATAACCGTGTCCGCCTTCACC
CCGCAGCTCATCTCCCGTCTTCGAACCTTCATCTCGCACACCCCATGTTT
CGAACTAGACAACCATTTACAAATGCTCGGTGCCATCGTCGTGCGTCACG
TCACTCTATGTCTGTCCGACCCGGACCGACAAACCGCCCCCCTGTCTCGC
ATCCAATCGCAGCCGGTCTTATCTCGACCTCAAACGCATGCTAAGCGACG
CAGCTACAGGGATCTTGCGTATCATGCTGTGCGTATCAATCGAATTGTGC
CTCAGTCTCAACCTCTTCAAGTGGAGCCCACGTCGTCATCGCCATCATCG
TCAACCACGAACATTCCTCGCCGACTGTCCATTCAAAAAGCAAGCAGTCT
GATAGATGTTGCCCAAACACGCCCCTCAACCACAATTCGCGGCTGTCAAA
CCTCCTCCGCCTCGACGAAAGAGAATGATAATATTGCTATCAATCAACCA
TCACAATTGTCAACCTTTCCTTCCCACACCAATCAGTCGGTTGCACTCCG
CGAAGAAACCTTCAACTCACGTTCCCCAAACCGAGCACAAGTGTTTCCTA
GGGCCGATGTCACCACCAGCATTGAAAGCGCTTCAATGCGCAAAGTCACC
TCTCCAACATCTCGTCAAAAAGTGGTCGCACAACCTCAGAATCTATCCGA
GTATGCCAACAGATTCAAAAACGATTCGAGGACCGCGGCGCCCATAAGTC
GCCTGGTTCAAATGCGAAAACAACGCGCTGAGAAGAAGAGACACAACCTC
AAATAG

Coding sequence (CDS) from alignment at NODE_222_length_35706_cov_4.342356:10366..11271+

>Gcaud2995.t1 ID=Gcaud2995.t1|Name=Gcaud2995.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=906bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:10366..11271+ (Gracilaria caudata M_176_S67 male)
ATGGAGTCCACTCACCCGCTTCTACACCCTGCGTCGCCCGACCCATCGCG
CCCCATTGCCGATGAATCACCCCCCTTTCCCTTTCAAAACACCCAGAACA
TCGGCCAAATCTGGACCGAACTCGCCAGTATAACCGTGTCCGCCTTCACC
CCGCAGCTCATCTCCCGTCTTCGAACCTTCATCTCGCACACCCCATGTTT
CGAACTAGACAACCATTTACAAATGCTCGGTGCCATCGTCGTGCGTCACG
TCACTCTATGTCTGTCCGACCCGGACCGACAAACCGCCCCCCTGTCTCGC
ATCCAATCGCAGCCGGTCTTATCTCGACCTCAAACGCATGCTAAGCGACG
CAGCTACAGGGATCTTGCGTATCATGCTGTGCGTATCAATCGAATTGTGC
CTCAGTCTCAACCTCTTCAAGTGGAGCCCACGTCGTCATCGCCATCATCG
TCAACCACGAACATTCCTCGCCGACTGTCCATTCAAAAAGCAAGCAGTCT
GATAGATGTTGCCCAAACACGCCCCTCAACCACAATTCGCGGCTGTCAAA
CCTCCTCCGCCTCGACGAAAGAGAATGATAATATTGCTATCAATCAACCA
TCACAATTGTCAACCTTTCCTTCCCACACCAATCAGTCGGTTGCACTCCG
CGAAGAAACCTTCAACTCACGTTCCCCAAACCGAGCACAAGTGTTTCCTA
GGGCCGATGTCACCACCAGCATTGAAAGCGCTTCAATGCGCAAAGTCACC
TCTCCAACATCTCGTCAAAAAGTGGTCGCACAACCTCAGAATCTATCCGA
GTATGCCAACAGATTCAAAAACGATTCGAGGACCGCGGCGCCCATAAGTC
GCCTGGTTCAAATGCGAAAACAACGCGCTGAGAAGAAGAGACACAACCTC
AAATAG