Gcaud2993.t3 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2993.t3
Unique NameGcaud2993.t3
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_222_length_35706_cov_4.342356contigNODE_222_length_35706_cov_4.342356:4906..7510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1250278.JQNQ01000001_gene687
PFAMsHe_PIG,Kelch_1,Kelch_3,Kelch_4,Kelch_6,Malectin,PKD
Max annot lvl976|Bacteroidetes
Evalue4.39e-55
EggNOG OGsCOG3055@1|root,COG3055@2|Bacteria,4NHHD@976|Bacteroidetes,1HZ82@117743|Flavobacteriia
DescriptionKelch
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2993Gcaud2993Gracilaria caudata M_176_S67 malegeneNODE_222_length_35706_cov_4.342356 4906..8072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2993.t3Gcaud2993.t3Gracilaria caudata M_176_S67 malepolypeptideNODE_222_length_35706_cov_4.342356 4906..7510 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2993.t3.start1Gcaud2993.t3.start1Gracilaria caudata M_176_S67 malestart_codonNODE_222_length_35706_cov_4.342356 4906..4908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2993.t3.CDS1Gcaud2993.t3.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_222_length_35706_cov_4.342356 4906..4924 +
Gcaud2993.t3.CDS2Gcaud2993.t3.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_222_length_35706_cov_4.342356 5138..5272 +
Gcaud2993.t3.CDS3Gcaud2993.t3.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_222_length_35706_cov_4.342356 6139..6633 +
Gcaud2993.t3.CDS4Gcaud2993.t3.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_222_length_35706_cov_4.342356 6720..7510 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2993.t3.exon1Gcaud2993.t3.exon1Gracilaria caudata M_176_S67 maleexonNODE_222_length_35706_cov_4.342356 4906..4924 +
Gcaud2993.t3.exon2Gcaud2993.t3.exon2Gracilaria caudata M_176_S67 maleexonNODE_222_length_35706_cov_4.342356 5138..5272 +
Gcaud2993.t3.exon3Gcaud2993.t3.exon3Gracilaria caudata M_176_S67 maleexonNODE_222_length_35706_cov_4.342356 6139..6633 +
Gcaud2993.t3.exon4Gcaud2993.t3.exon4Gracilaria caudata M_176_S67 maleexonNODE_222_length_35706_cov_4.342356 6720..7510 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2993.t3.intron1Gcaud2993.t3.intron1Gracilaria caudata M_176_S67 maleintronNODE_222_length_35706_cov_4.342356 4925..5137 +
Gcaud2993.t3.intron2Gcaud2993.t3.intron2Gracilaria caudata M_176_S67 maleintronNODE_222_length_35706_cov_4.342356 5273..6138 +
Gcaud2993.t3.intron3Gcaud2993.t3.intron3Gracilaria caudata M_176_S67 maleintronNODE_222_length_35706_cov_4.342356 6634..6719 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2993.t3.stop1Gcaud2993.t3.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_222_length_35706_cov_4.342356 7508..7510 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2993.t3 ID=Gcaud2993.t3|Name=Gcaud2993.t3|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp
MTVYHSRIQRSQKSVNIVLSPRPKRNERPSKAEFQSTTASGEHHIDAIPR
RTLGAVSWKKVPVSGSYPGRGETSLSLCDGNKVCLLGGRGANRVNILDTE
TLQWKGAQSNSLEMHHFQAFQGPDNCVWVAGAWTGGFPSEDTVDNIWRYC
PDSDEWFKDVQIDRPRGAGGAFFYDGKVYLVTGNVGGHRAGAKVVPWFDS
YDPATGKWERLPDMPNPRDHCNAVVLGGKVYVTGGRHSTSDFPEFFDDTE
AEVDVYDFATGKWSTLTELSRPRGGTASAVLDGTVYVMGGEGDNRAWTEV
DVLEGVSFQPAPSLPEPRHGTGIVSCDGAIWIAGGERVIGAGNPATDTYA
LYDGDELPICRNSATSAPTTAPASQGPSPVSSPVSSSSPSSSGEQGSDEP
STPNDTSSGAVGADEIEASSSPSNRKFFFACITVLMGLVRSISPSATELH
QPSDHYFIVLHSIITITINRRSDFDDKLR*
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spliced messenger RNA

>Gcaud2993.t3 ID=Gcaud2993.t3|Name=Gcaud2993.t3|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:4906..7510+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTATACCATTCTCGGATACAAAGGtctcagaaaagcgtcaacat
tgtactctcgccgaggccgAAGCGTAACGAAAGACCAAGTAAGGCCGAGT
TTCAAAGCACCACGGCCTCTGGAGAGCACCATATCGACGCCATTCCGCGC
AGAACGCTAGGCGCCGTATCTTGGAAGAAGGTTCCGGTTTCCGGCAGCTA
TCCAGGTCGTGGAGAAACCTCTCTGTCTCTATGCGATGGCAACAAAGTAT
GCCTTCTAGGCGGGCGTGGCGCTAATCGCGTCAACATTCTCGATACTGAA
ACTCTACAATGGAAAGGAGCTCAGTCCAATTCTTTGGAAATGCATCACTT
CCAAGCCTTTCAGGGTCCTGATAATTGCGTCTGGGTAGCAGGTGCCTGGA
CAGGTGGCTTTCCTTCCGAAGATACCGTCGACAACATCTGGCGTTATTGT
CCGGATTCTGACGAATGGTTTAAGGATGTGCAGATTGATCGTCCACGAGG
TGCTGGCGGCGCGTTTTTCTACGACGGAAAGGTGTATCTAGTAACAGGAA
ATGTTGGCGGCCATCGCGCGGGTGCCAAGGTTGTCCCTTGGTTCGACTCA
TACGACCCGGCAACTGGCAAATGGGAAAGGCTTCCTGACATGCCTAACCC
GCGCGATCATTGTAACGCCGTGGTGCTTGGTGGGAAGGTTTACGTTACCG
GTGGACGTCATTCGACATCGGACTTTCCAGAGTTCTTCGACGACACCGAG
GCGGAGGTGGATGTATACGATTTCGCTACTGGCAAGTGGAGCACTCTGAC
CGAACTCTCCCGTCCGCGTGGTGGCACGGCGTCTGCGGTGCTCGATGGCA
CTGTGTACGTAATGGGAGGCGAGGGCGACAATCGAGCGTGGACTGAAGTG
GATGTACTGGAGGGCGTCTCTTTCCAACCAGCTCCTTCTCTACCAGAACC
GCGTCACGGAACCGGAATTGTTTCATGCGATGGAGCAATCTGGATTGCCG
GCGGTGAGCGCGTCATTGGAGCGGGAAATCCCGCGACTGACACATATGCT
TTGTATGATGGTGACGAGTTGCCAATCTGTAGGAACTCTGCAACCAGTGC
ACCAACCACAGCACCAGCCAGTCAGGGACCCTCTCCGGTATCTTCTCCAG
TGTCTTCTTCTTCACCGTCTTCTTCGGGAGAGCAGGGCTCAGACGAGCCG
TCTACTCCCAATGATACTTCTAGTGGAGCCGTTGGAGCGGACGAAATTGA
AGCAAGCAGTTCTCCGTCAAACCGTAAGTTTTTCTTCGCATGCATCACAG
TATTGATGGGTCTCGTTCGGTCCATCTCCCCTTCCGCGACTGAACTCCAT
CAACCCTCTGACCATTATTTTATTGTTTTGCACAGCATCATCACCATCAC
CATCAACAGAAGAAGCGACTTCGACGACAAGCTCCGCTGA
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protein sequence of Gcaud2993.t3

>Gcaud2993.t3 ID=Gcaud2993.t3|Name=Gcaud2993.t3|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=480bp
MTVYHSRIQRSQKSVNIVLSPRPKRNERPSKAEFQSTTASGEHHIDAIPR
RTLGAVSWKKVPVSGSYPGRGETSLSLCDGNKVCLLGGRGANRVNILDTE
TLQWKGAQSNSLEMHHFQAFQGPDNCVWVAGAWTGGFPSEDTVDNIWRYC
PDSDEWFKDVQIDRPRGAGGAFFYDGKVYLVTGNVGGHRAGAKVVPWFDS
YDPATGKWERLPDMPNPRDHCNAVVLGGKVYVTGGRHSTSDFPEFFDDTE
AEVDVYDFATGKWSTLTELSRPRGGTASAVLDGTVYVMGGEGDNRAWTEV
DVLEGVSFQPAPSLPEPRHGTGIVSCDGAIWIAGGERVIGAGNPATDTYA
LYDGDELPICRNSATSAPTTAPASQGPSPVSSPVSSSSPSSSGEQGSDEP
STPNDTSSGAVGADEIEASSSPSNRKFFFACITVLMGLVRSISPSATELH
QPSDHYFIVLHSIITITINRRSDFDDKLR*
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mRNA from alignment at NODE_222_length_35706_cov_4.342356:4906..7510+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2993.t3 ID=Gcaud2993.t3|Name=Gcaud2993.t3|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2605bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:4906..7510+ (Gracilaria caudata M_176_S67 male)
ATGACCGTATACCATTCTCGTAAGTACTTTCGTAGGTGTGCCTAAATATC
CGCCATGGGAAGTTCATGTTGTTGACTAGACTCAATATTAGCTATAACAG
ACAACGAGAACGGCTCGGGGAGGGTTCACAAGCTCCGTGCAAGAAGTTTG
CGAAGTCTTGTATGCGCATCATCACGTTCTTTATTATCATGTAACAAAGT
ACGGCTAACTCTTGAAGTTCATCCACTTTTAGGGATACAAAGGtctcaga
aaagcgtcaacattgtactctcgccgaggccgAAGCGTAACGAAAGACCA
AGTAAGGCCGAGTTTCAAAGCACCACGGCCTCTGGAGAGCACCATATCGA
CGCCATTCCGCGCAGAAGTCCCTCAATGCTTGGGATGAAGACGAACTGCA
GGATTACGAGCCCTTGTCCTTCAGTCGGGCCAATATGTTGACTCACACAA
CGTCTATTCTGCAGACAGGCCTTTTGGACTACGATGCAAATTGCGTTATC
GAGATTCCAGATATAATTGATGATGCACATGAAGACTGCACACTTCTTGC
CATATGAGAGCGAATTACGAAAAGTGCGCTGCGCACAATGAGCACGATTT
AAACTGCTCTCAGAGTGTTAGAGCTGTTCGTGCAGGGCTTCGTACGAGCC
TGAACCACTTTCATTTTCAAGCCGTCGCAGAGCTGACTTTGACGGGTTGA
AAGAAGCCCAGCTTTCGCAACGCTATGCGGAACATGACATTTGAGAAAGG
ACAATCGTTGCTCGCTTGTTCAATTTACGAGGTCATGACGAGGTCAAACA
AGCAACGATTCAACAGTTTTGTGCTTTATTCCCAAAGATGTGCTCTCCAC
GTCATCATCTTGTCAGCCTCCCAAGTATTGTTACGAGCTGCCAACACGTG
TCTGCATACCAAAATCGTTCAAATCGTGACGGTACTGTAAACGAAACCTC
AACTGCACCCATGCGTGGCATTGCATATGTATTCTTCGTCGTGGGGATAA
CGGCCGGCCCATCTTTCTTTCAAGCCGCCAATCTTCCCGACCGTCCGTCT
GCAACATCGATACTCTCGAGTACGAAGGTACCTTGAGCACTTGATCTATC
TGGCGCATAGCTATACTCCAACTTGACGGCGAAGACAACAATCGTTTCAT
ATAGGACGCCACGAACTGAATAACTGAGCTCGTCATGCGCTTCGCGTATC
ATGTGCTCGTGCTCTTCTTGCTTTGTACATCAGCGCTAGGCGCCGTATCT
TGGAAGAAGGTTCCGGTTTCCGGCAGCTATCCAGGTCGTGGAGAAACCTC
TCTGTCTCTATGCGATGGCAACAAAGTATGCCTTCTAGGCGGGCGTGGCG
CTAATCGCGTCAACATTCTCGATACTGAAACTCTACAATGGAAAGGAGCT
CAGTCCAATTCTTTGGAAATGCATCACTTCCAAGCCTTTCAGGGTCCTGA
TAATTGCGTCTGGGTAGCAGGTGCCTGGACAGGTGGCTTTCCTTCCGAAG
ATACCGTCGACAACATCTGGCGTTATTGTCCGGATTCTGACGAATGGTTT
AAGGATGTGCAGATTGATCGTCCACGAGGTGCTGGCGGCGCGTTTTTCTA
CGACGGAAAGGTGTATCTAGTAACAGGAAATGTTGGCGGCCATCGCGCGG
GTGCCAAGGTTGTCCCTTGGTTCGACTCATACGACCCGGCAACTGGCAAA
TGGGAAAGGCTTCCTGACATGCCTAACCGTAAGTCATCAACAATTTTTCA
TTCATCGGTGGTAAGACTTCGAGCAAAACTCTTCTAACCTGAGATCTTTT
GTTGAACGACGAAGCGCGCGATCATTGTAACGCCGTGGTGCTTGGTGGGA
AGGTTTACGTTACCGGTGGACGTCATTCGACATCGGACTTTCCAGAGTTC
TTCGACGACACCGAGGCGGAGGTGGATGTATACGATTTCGCTACTGGCAA
GTGGAGCACTCTGACCGAACTCTCCCGTCCGCGTGGTGGCACGGCGTCTG
CGGTGCTCGATGGCACTGTGTACGTAATGGGAGGCGAGGGCGACAATCGA
GCGTGGACTGAAGTGGATGTACTGGAGGGCGTCTCTTTCCAACCAGCTCC
TTCTCTACCAGAACCGCGTCACGGAACCGGAATTGTTTCATGCGATGGAG
CAATCTGGATTGCCGGCGGTGAGCGCGTCATTGGAGCGGGAAATCCCGCG
ACTGACACATATGCTTTGTATGATGGTGACGAGTTGCCAATCTGTAGGAA
CTCTGCAACCAGTGCACCAACCACAGCACCAGCCAGTCAGGGACCCTCTC
CGGTATCTTCTCCAGTGTCTTCTTCTTCACCGTCTTCTTCGGGAGAGCAG
GGCTCAGACGAGCCGTCTACTCCCAATGATACTTCTAGTGGAGCCGTTGG
AGCGGACGAAATTGAAGCAAGCAGTTCTCCGTCAAACCGTAAGTTTTTCT
TCGCATGCATCACAGTATTGATGGGTCTCGTTCGGTCCATCTCCCCTTCC
GCGACTGAACTCCATCAACCCTCTGACCATTATTTTATTGTTTTGCACAG
CATCATCACCATCACCATCAACAGAAGAAGCGACTTCGACGACAAGCTCC
GCTGA
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Coding sequence (CDS) from alignment at NODE_222_length_35706_cov_4.342356:4906..7510+

>Gcaud2993.t3 ID=Gcaud2993.t3|Name=Gcaud2993.t3|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1440bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:4906..7510+ (Gracilaria caudata M_176_S67 male)
ATGACCGTATACCATTCTCGGATACAAAGGtctcagaaaagcgtcaacat
tgtactctcgccgaggccgAAGCGTAACGAAAGACCAAGTAAGGCCGAGT
TTCAAAGCACCACGGCCTCTGGAGAGCACCATATCGACGCCATTCCGCGC
AGAACGCTAGGCGCCGTATCTTGGAAGAAGGTTCCGGTTTCCGGCAGCTA
TCCAGGTCGTGGAGAAACCTCTCTGTCTCTATGCGATGGCAACAAAGTAT
GCCTTCTAGGCGGGCGTGGCGCTAATCGCGTCAACATTCTCGATACTGAA
ACTCTACAATGGAAAGGAGCTCAGTCCAATTCTTTGGAAATGCATCACTT
CCAAGCCTTTCAGGGTCCTGATAATTGCGTCTGGGTAGCAGGTGCCTGGA
CAGGTGGCTTTCCTTCCGAAGATACCGTCGACAACATCTGGCGTTATTGT
CCGGATTCTGACGAATGGTTTAAGGATGTGCAGATTGATCGTCCACGAGG
TGCTGGCGGCGCGTTTTTCTACGACGGAAAGGTGTATCTAGTAACAGGAA
ATGTTGGCGGCCATCGCGCGGGTGCCAAGGTTGTCCCTTGGTTCGACTCA
TACGACCCGGCAACTGGCAAATGGGAAAGGCTTCCTGACATGCCTAACCC
GCGCGATCATTGTAACGCCGTGGTGCTTGGTGGGAAGGTTTACGTTACCG
GTGGACGTCATTCGACATCGGACTTTCCAGAGTTCTTCGACGACACCGAG
GCGGAGGTGGATGTATACGATTTCGCTACTGGCAAGTGGAGCACTCTGAC
CGAACTCTCCCGTCCGCGTGGTGGCACGGCGTCTGCGGTGCTCGATGGCA
CTGTGTACGTAATGGGAGGCGAGGGCGACAATCGAGCGTGGACTGAAGTG
GATGTACTGGAGGGCGTCTCTTTCCAACCAGCTCCTTCTCTACCAGAACC
GCGTCACGGAACCGGAATTGTTTCATGCGATGGAGCAATCTGGATTGCCG
GCGGTGAGCGCGTCATTGGAGCGGGAAATCCCGCGACTGACACATATGCT
TTGTATGATGGTGACGAGTTGCCAATCTGTAGGAACTCTGCAACCAGTGC
ACCAACCACAGCACCAGCCAGTCAGGGACCCTCTCCGGTATCTTCTCCAG
TGTCTTCTTCTTCACCGTCTTCTTCGGGAGAGCAGGGCTCAGACGAGCCG
TCTACTCCCAATGATACTTCTAGTGGAGCCGTTGGAGCGGACGAAATTGA
AGCAAGCAGTTCTCCGTCAAACCGTAAGTTTTTCTTCGCATGCATCACAG
TATTGATGGGTCTCGTTCGGTCCATCTCCCCTTCCGCGACTGAACTCCAT
CAACCCTCTGACCATTATTTTATTGTTTTGCACAGCATCATCACCATCAC
CATCAACAGAAGAAGCGACTTCGACGACAAGCTCCGCTGA
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