Gcaud2993.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2993.t2
Unique NameGcaud2993.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_222_length_35706_cov_4.342356contigNODE_222_length_35706_cov_4.342356:4906..5462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2993Gcaud2993Gracilaria caudata M_176_S67 malegeneNODE_222_length_35706_cov_4.342356 4906..8072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2993.t2Gcaud2993.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_222_length_35706_cov_4.342356 4906..5462 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2993.t2.start1Gcaud2993.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_222_length_35706_cov_4.342356 4906..4908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2993.t2.CDS1Gcaud2993.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_222_length_35706_cov_4.342356 4906..4924 +
Gcaud2993.t2.CDS2Gcaud2993.t2.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_222_length_35706_cov_4.342356 4997..5064 +
Gcaud2993.t2.CDS3Gcaud2993.t2.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_222_length_35706_cov_4.342356 5138..5206 +
Gcaud2993.t2.CDS4Gcaud2993.t2.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_222_length_35706_cov_4.342356 5271..5462 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2993.t2.exon1Gcaud2993.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_222_length_35706_cov_4.342356 4906..4924 +
Gcaud2993.t2.exon2Gcaud2993.t2.exon2Gracilaria caudata M_176_S67 maleexonNODE_222_length_35706_cov_4.342356 4997..5064 +
Gcaud2993.t2.exon3Gcaud2993.t2.exon3Gracilaria caudata M_176_S67 maleexonNODE_222_length_35706_cov_4.342356 5138..5206 +
Gcaud2993.t2.exon4Gcaud2993.t2.exon4Gracilaria caudata M_176_S67 maleexonNODE_222_length_35706_cov_4.342356 5271..5462 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2993.t2.intron1Gcaud2993.t2.intron1Gracilaria caudata M_176_S67 maleintronNODE_222_length_35706_cov_4.342356 4925..4996 +
Gcaud2993.t2.intron2Gcaud2993.t2.intron2Gracilaria caudata M_176_S67 maleintronNODE_222_length_35706_cov_4.342356 5065..5137 +
Gcaud2993.t2.intron3Gcaud2993.t2.intron3Gracilaria caudata M_176_S67 maleintronNODE_222_length_35706_cov_4.342356 5207..5270 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2993.t2.stop1Gcaud2993.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_222_length_35706_cov_4.342356 5460..5462 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2993.t2 ID=Gcaud2993.t2|Name=Gcaud2993.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=116bp
MTVYHSPITDNENGSGRVHKLRARSLRSLGYKGLRKASTLYSRRGRSVTK
DQKSLNAWDEDELQDYEPLSFSRANMLTHTTSILQTGLLDYDANCVIEIP
DIIDDAHEDCTLLAI*
back to top

spliced messenger RNA

>Gcaud2993.t2 ID=Gcaud2993.t2|Name=Gcaud2993.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:4906..5462+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTATACCATTCTCCTATAACAGACAACGAGAACGGCTCGGGGAG
GGTTCACAAGCTCCGTGCAAGAAGTTTGCGAAGTCTTGGATACAAAGGtc
tcagaaaagcgtcaacattgtactctcgccgaggccgAAGCGTAACGAAA
GACCAAAAGTCCCTCAATGCTTGGGATGAAGACGAACTGCAGGATTACGA
GCCCTTGTCCTTCAGTCGGGCCAATATGTTGACTCACACAACGTCTATTC
TGCAGACAGGCCTTTTGGACTACGATGCAAATTGCGTTATCGAGATTCCA
GATATAATTGATGATGCACATGAAGACTGCACACTTCTTGCCATATGA
back to top

protein sequence of Gcaud2993.t2

>Gcaud2993.t2 ID=Gcaud2993.t2|Name=Gcaud2993.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=116bp
MTVYHSPITDNENGSGRVHKLRARSLRSLGYKGLRKASTLYSRRGRSVTK
DQKSLNAWDEDELQDYEPLSFSRANMLTHTTSILQTGLLDYDANCVIEIP
DIIDDAHEDCTLLAI*
back to top

mRNA from alignment at NODE_222_length_35706_cov_4.342356:4906..5462+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2993.t2 ID=Gcaud2993.t2|Name=Gcaud2993.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=557bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:4906..5462+ (Gracilaria caudata M_176_S67 male)
ATGACCGTATACCATTCTCGTAAGTACTTTCGTAGGTGTGCCTAAATATC
CGCCATGGGAAGTTCATGTTGTTGACTAGACTCAATATTAGCTATAACAG
ACAACGAGAACGGCTCGGGGAGGGTTCACAAGCTCCGTGCAAGAAGTTTG
CGAAGTCTTGTATGCGCATCATCACGTTCTTTATTATCATGTAACAAAGT
ACGGCTAACTCTTGAAGTTCATCCACTTTTAGGGATACAAAGGtctcaga
aaagcgtcaacattgtactctcgccgaggccgAAGCGTAACGAAAGACCA
AGTAAGGCCGAGTTTCAAAGCACCACGGCCTCTGGAGAGCACCATATCGA
CGCCATTCCGCGCAGAAGTCCCTCAATGCTTGGGATGAAGACGAACTGCA
GGATTACGAGCCCTTGTCCTTCAGTCGGGCCAATATGTTGACTCACACAA
CGTCTATTCTGCAGACAGGCCTTTTGGACTACGATGCAAATTGCGTTATC
GAGATTCCAGATATAATTGATGATGCACATGAAGACTGCACACTTCTTGC
CATATGA
back to top

Coding sequence (CDS) from alignment at NODE_222_length_35706_cov_4.342356:4906..5462+

>Gcaud2993.t2 ID=Gcaud2993.t2|Name=Gcaud2993.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=348bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:4906..5462+ (Gracilaria caudata M_176_S67 male)
ATGACCGTATACCATTCTCCTATAACAGACAACGAGAACGGCTCGGGGAG
GGTTCACAAGCTCCGTGCAAGAAGTTTGCGAAGTCTTGGATACAAAGGtc
tcagaaaagcgtcaacattgtactctcgccgaggccgAAGCGTAACGAAA
GACCAAAAGTCCCTCAATGCTTGGGATGAAGACGAACTGCAGGATTACGA
GCCCTTGTCCTTCAGTCGGGCCAATATGTTGACTCACACAACGTCTATTC
TGCAGACAGGCCTTTTGGACTACGATGCAAATTGCGTTATCGAGATTCCA
GATATAATTGATGATGCACATGAAGACTGCACACTTCTTGCCATATGA
back to top