Gcaud2993.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2993.t1
Unique Name	Gcaud2993.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	595

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_222_length_35706_cov_4.342356	contig	NODE_222_length_35706_cov_4.342356:6090..8072 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1250278.JQNQ01000001_gene687
PFAMs	He_PIG,Kelch_1,Kelch_3,Kelch_4,Kelch_6,Malectin,PKD
Max annot lvl	976\|Bacteroidetes
Evalue	3.57e-55
EggNOG OGs	COG3055@1\|root,COG3055@2\|Bacteria,4NHHD@976\|Bacteroidetes,1HZ82@117743\|Flavobacteriia
Description	Kelch
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2993	Gcaud2993	Gracilaria caudata M_176_S67 male	gene	NODE_222_length_35706_cov_4.342356 4906..8072 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2993.t1	Gcaud2993.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_222_length_35706_cov_4.342356 6090..8072 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2993.t1.start1	Gcaud2993.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_222_length_35706_cov_4.342356 6090..6092 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2993.t1.CDS1	Gcaud2993.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 6090..6633 +
Gcaud2993.t1.CDS2	Gcaud2993.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 6720..7343 +
Gcaud2993.t1.CDS3	Gcaud2993.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 7456..8072 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2993.t1.exon1	Gcaud2993.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 6090..6633 +
Gcaud2993.t1.exon2	Gcaud2993.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 6720..7343 +
Gcaud2993.t1.exon3	Gcaud2993.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 7456..8072 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2993.t1.intron1	Gcaud2993.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_222_length_35706_cov_4.342356 6634..6719 +
Gcaud2993.t1.intron2	Gcaud2993.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_222_length_35706_cov_4.342356 7344..7455 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2993.t1.stop1	Gcaud2993.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_222_length_35706_cov_4.342356 8070..8072 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_222_length_35706_cov_4.342356:6090..8072+
coding sequence from alignment at NODE_222_length_35706_cov_4.342356:6090..8072+

mRNA sequence

>Gcaud2993.t1 ID=Gcaud2993.t1|Name=Gcaud2993.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=595bp
MRFAYHVLVLFLLCTSALGAVSWKKVPVSGSYPGRGETSLSLCDGNKVCL
LGGRGANRVNILDTETLQWKGAQSNSLEMHHFQAFQGPDNCVWVAGAWTG
GFPSEDTVDNIWRYCPDSDEWFKDVQIDRPRGAGGAFFYDGKVYLVTGNV
GGHRAGAKVVPWFDSYDPATGKWERLPDMPNPRDHCNAVVLGGKVYVTGG
RHSTSDFPEFFDDTEAEVDVYDFATGKWSTLTELSRPRGGTASAVLDGTV
YVMGGEGDNRAWTEVDVLEGVSFQPAPSLPEPRHGTGIVSCDGAIWIAGG
ERVIGAGNPATDTYALYDGDELPICRNSATSAPTTAPASQGPSPVSSPVS
SSSPSSSGEQGSDEPSTPNDTSSGAVGADEIEASSSPSNPSSPSPSTEEA
TSTTSSAEDSGSGPTCFPSDATVELEDGSIKAMSSLRIGDRVKVAHPNEY
SEIFFFSHNHPDKHSEFVNIRTSRDSVSLTLSPGHLVYINGALAEASSMR
AGDKVSISHDSKTAVVTEVSRVVAPGLHNPHTLHGDIVVNGVIASTYTSA
VHPVLAKVLLTPLKVAYRMLKTRENMEVMNRVVLRTLDATYWRN*

spliced messenger RNA

>Gcaud2993.t1 ID=Gcaud2993.t1|Name=Gcaud2993.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:6090..8072+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCGCGTATCATGTGCTCGTGCTCTTCTTGCTTTGTACATCAGC
GCTAGGCGCCGTATCTTGGAAGAAGGTTCCGGTTTCCGGCAGCTATCCAG
GTCGTGGAGAAACCTCTCTGTCTCTATGCGATGGCAACAAAGTATGCCTT
CTAGGCGGGCGTGGCGCTAATCGCGTCAACATTCTCGATACTGAAACTCT
ACAATGGAAAGGAGCTCAGTCCAATTCTTTGGAAATGCATCACTTCCAAG
CCTTTCAGGGTCCTGATAATTGCGTCTGGGTAGCAGGTGCCTGGACAGGT
GGCTTTCCTTCCGAAGATACCGTCGACAACATCTGGCGTTATTGTCCGGA
TTCTGACGAATGGTTTAAGGATGTGCAGATTGATCGTCCACGAGGTGCTG
GCGGCGCGTTTTTCTACGACGGAAAGGTGTATCTAGTAACAGGAAATGTT
GGCGGCCATCGCGCGGGTGCCAAGGTTGTCCCTTGGTTCGACTCATACGA
CCCGGCAACTGGCAAATGGGAAAGGCTTCCTGACATGCCTAACCCGCGCG
ATCATTGTAACGCCGTGGTGCTTGGTGGGAAGGTTTACGTTACCGGTGGA
CGTCATTCGACATCGGACTTTCCAGAGTTCTTCGACGACACCGAGGCGGA
GGTGGATGTATACGATTTCGCTACTGGCAAGTGGAGCACTCTGACCGAAC
TCTCCCGTCCGCGTGGTGGCACGGCGTCTGCGGTGCTCGATGGCACTGTG
TACGTAATGGGAGGCGAGGGCGACAATCGAGCGTGGACTGAAGTGGATGT
ACTGGAGGGCGTCTCTTTCCAACCAGCTCCTTCTCTACCAGAACCGCGTC
ACGGAACCGGAATTGTTTCATGCGATGGAGCAATCTGGATTGCCGGCGGT
GAGCGCGTCATTGGAGCGGGAAATCCCGCGACTGACACATATGCTTTGTA
TGATGGTGACGAGTTGCCAATCTGTAGGAACTCTGCAACCAGTGCACCAA
CCACAGCACCAGCCAGTCAGGGACCCTCTCCGGTATCTTCTCCAGTGTCT
TCTTCTTCACCGTCTTCTTCGGGAGAGCAGGGCTCAGACGAGCCGTCTAC
TCCCAATGATACTTCTAGTGGAGCCGTTGGAGCGGACGAAATTGAAGCAA
GCAGTTCTCCGTCAAACCCATCATCACCATCACCATCAACAGAAGAAGCG
ACTTCGACGACAAGCTCCGCTGAAGATAGCGGTAGTGGCCCTACTTGCTT
CCCGTCTGATGCCACTGTGGAACTCGAGGATGGTTCCATCAAAGCCATGA
GTTCGTTGCGCATCGGTGATCGAGTGAAAGTTGCTCATCCCAACGAATAT
AGCGAAATCTTCTTCTTTTCTCACAACCACCCGGACAAGCACTCCGAGTT
TGTTAACATTAGAACCTCAAGGGATAGTGTATCTCTGACCCTGTCGCCAG
GACACTTGGTGTACATTAACGGAGCTTTGGCGGAAGCCTCGAGCATGCGC
GCTGGAGACAAGGTATCCATCTCACATGACTCAAAGACAGCAGTTGTGAC
AGAAGTGTCCAGAGTTGTGGCTCCGGGATTGCACAACCCGCATACCTTGC
ATGGTGATATCGTTGTGAATGGAGTGATTGCGAGCACGTACACGTCTGCT
GTACACCCTGTACTTGCGAAGGTGCTATTGACTCCACTGAAGGTTGCATA
CCGCATGTTAAAAACACGTGAGAACATGGAGGTTATGAACAGGGTGGTGC
TTCGCACTCTGGATGCAACGTACTGGAGGAATTAA

protein sequence of Gcaud2993.t1

>Gcaud2993.t1 ID=Gcaud2993.t1|Name=Gcaud2993.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=595bp
MRFAYHVLVLFLLCTSALGAVSWKKVPVSGSYPGRGETSLSLCDGNKVCL
LGGRGANRVNILDTETLQWKGAQSNSLEMHHFQAFQGPDNCVWVAGAWTG
GFPSEDTVDNIWRYCPDSDEWFKDVQIDRPRGAGGAFFYDGKVYLVTGNV
GGHRAGAKVVPWFDSYDPATGKWERLPDMPNPRDHCNAVVLGGKVYVTGG
RHSTSDFPEFFDDTEAEVDVYDFATGKWSTLTELSRPRGGTASAVLDGTV
YVMGGEGDNRAWTEVDVLEGVSFQPAPSLPEPRHGTGIVSCDGAIWIAGG
ERVIGAGNPATDTYALYDGDELPICRNSATSAPTTAPASQGPSPVSSPVS
SSSPSSSGEQGSDEPSTPNDTSSGAVGADEIEASSSPSNPSSPSPSTEEA
TSTTSSAEDSGSGPTCFPSDATVELEDGSIKAMSSLRIGDRVKVAHPNEY
SEIFFFSHNHPDKHSEFVNIRTSRDSVSLTLSPGHLVYINGALAEASSMR
AGDKVSISHDSKTAVVTEVSRVVAPGLHNPHTLHGDIVVNGVIASTYTSA
VHPVLAKVLLTPLKVAYRMLKTRENMEVMNRVVLRTLDATYWRN*

mRNA from alignment at NODE_222_length_35706_cov_4.342356:6090..8072+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2993.t1 ID=Gcaud2993.t1|Name=Gcaud2993.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1983bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:6090..8072+ (Gracilaria caudata M_176_S67 male)
ATGCGCTTCGCGTATCATGTGCTCGTGCTCTTCTTGCTTTGTACATCAGC
GCTAGGCGCCGTATCTTGGAAGAAGGTTCCGGTTTCCGGCAGCTATCCAG
GTCGTGGAGAAACCTCTCTGTCTCTATGCGATGGCAACAAAGTATGCCTT
CTAGGCGGGCGTGGCGCTAATCGCGTCAACATTCTCGATACTGAAACTCT
ACAATGGAAAGGAGCTCAGTCCAATTCTTTGGAAATGCATCACTTCCAAG
CCTTTCAGGGTCCTGATAATTGCGTCTGGGTAGCAGGTGCCTGGACAGGT
GGCTTTCCTTCCGAAGATACCGTCGACAACATCTGGCGTTATTGTCCGGA
TTCTGACGAATGGTTTAAGGATGTGCAGATTGATCGTCCACGAGGTGCTG
GCGGCGCGTTTTTCTACGACGGAAAGGTGTATCTAGTAACAGGAAATGTT
GGCGGCCATCGCGCGGGTGCCAAGGTTGTCCCTTGGTTCGACTCATACGA
CCCGGCAACTGGCAAATGGGAAAGGCTTCCTGACATGCCTAACCGTAAGT
CATCAACAATTTTTCATTCATCGGTGGTAAGACTTCGAGCAAAACTCTTC
TAACCTGAGATCTTTTGTTGAACGACGAAGCGCGCGATCATTGTAACGCC
GTGGTGCTTGGTGGGAAGGTTTACGTTACCGGTGGACGTCATTCGACATC
GGACTTTCCAGAGTTCTTCGACGACACCGAGGCGGAGGTGGATGTATACG
ATTTCGCTACTGGCAAGTGGAGCACTCTGACCGAACTCTCCCGTCCGCGT
GGTGGCACGGCGTCTGCGGTGCTCGATGGCACTGTGTACGTAATGGGAGG
CGAGGGCGACAATCGAGCGTGGACTGAAGTGGATGTACTGGAGGGCGTCT
CTTTCCAACCAGCTCCTTCTCTACCAGAACCGCGTCACGGAACCGGAATT
GTTTCATGCGATGGAGCAATCTGGATTGCCGGCGGTGAGCGCGTCATTGG
AGCGGGAAATCCCGCGACTGACACATATGCTTTGTATGATGGTGACGAGT
TGCCAATCTGTAGGAACTCTGCAACCAGTGCACCAACCACAGCACCAGCC
AGTCAGGGACCCTCTCCGGTATCTTCTCCAGTGTCTTCTTCTTCACCGTC
TTCTTCGGGAGAGCAGGGCTCAGACGAGCCGTCTACTCCCAATGATACTT
CTAGTGGAGCCGTTGGAGCGGACGAAATTGAAGCAAGCAGTTCTCCGTCA
AACCGTAAGTTTTTCTTCGCATGCATCACAGTATTGATGGGTCTCGTTCG
GTCCATCTCCCCTTCCGCGACTGAACTCCATCAACCCTCTGACCATTATT
TTATTGTTTTGCACAGCATCATCACCATCACCATCAACAGAAGAAGCGAC
TTCGACGACAAGCTCCGCTGAAGATAGCGGTAGTGGCCCTACTTGCTTCC
CGTCTGATGCCACTGTGGAACTCGAGGATGGTTCCATCAAAGCCATGAGT
TCGTTGCGCATCGGTGATCGAGTGAAAGTTGCTCATCCCAACGAATATAG
CGAAATCTTCTTCTTTTCTCACAACCACCCGGACAAGCACTCCGAGTTTG
TTAACATTAGAACCTCAAGGGATAGTGTATCTCTGACCCTGTCGCCAGGA
CACTTGGTGTACATTAACGGAGCTTTGGCGGAAGCCTCGAGCATGCGCGC
TGGAGACAAGGTATCCATCTCACATGACTCAAAGACAGCAGTTGTGACAG
AAGTGTCCAGAGTTGTGGCTCCGGGATTGCACAACCCGCATACCTTGCAT
GGTGATATCGTTGTGAATGGAGTGATTGCGAGCACGTACACGTCTGCTGT
ACACCCTGTACTTGCGAAGGTGCTATTGACTCCACTGAAGGTTGCATACC
GCATGTTAAAAACACGTGAGAACATGGAGGTTATGAACAGGGTGGTGCTT
CGCACTCTGGATGCAACGTACTGGAGGAATTAA

Coding sequence (CDS) from alignment at NODE_222_length_35706_cov_4.342356:6090..8072+

>Gcaud2993.t1 ID=Gcaud2993.t1|Name=Gcaud2993.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1785bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:6090..8072+ (Gracilaria caudata M_176_S67 male)
ATGCGCTTCGCGTATCATGTGCTCGTGCTCTTCTTGCTTTGTACATCAGC
GCTAGGCGCCGTATCTTGGAAGAAGGTTCCGGTTTCCGGCAGCTATCCAG
GTCGTGGAGAAACCTCTCTGTCTCTATGCGATGGCAACAAAGTATGCCTT
CTAGGCGGGCGTGGCGCTAATCGCGTCAACATTCTCGATACTGAAACTCT
ACAATGGAAAGGAGCTCAGTCCAATTCTTTGGAAATGCATCACTTCCAAG
CCTTTCAGGGTCCTGATAATTGCGTCTGGGTAGCAGGTGCCTGGACAGGT
GGCTTTCCTTCCGAAGATACCGTCGACAACATCTGGCGTTATTGTCCGGA
TTCTGACGAATGGTTTAAGGATGTGCAGATTGATCGTCCACGAGGTGCTG
GCGGCGCGTTTTTCTACGACGGAAAGGTGTATCTAGTAACAGGAAATGTT
GGCGGCCATCGCGCGGGTGCCAAGGTTGTCCCTTGGTTCGACTCATACGA
CCCGGCAACTGGCAAATGGGAAAGGCTTCCTGACATGCCTAACCCGCGCG
ATCATTGTAACGCCGTGGTGCTTGGTGGGAAGGTTTACGTTACCGGTGGA
CGTCATTCGACATCGGACTTTCCAGAGTTCTTCGACGACACCGAGGCGGA
GGTGGATGTATACGATTTCGCTACTGGCAAGTGGAGCACTCTGACCGAAC
TCTCCCGTCCGCGTGGTGGCACGGCGTCTGCGGTGCTCGATGGCACTGTG
TACGTAATGGGAGGCGAGGGCGACAATCGAGCGTGGACTGAAGTGGATGT
ACTGGAGGGCGTCTCTTTCCAACCAGCTCCTTCTCTACCAGAACCGCGTC
ACGGAACCGGAATTGTTTCATGCGATGGAGCAATCTGGATTGCCGGCGGT
GAGCGCGTCATTGGAGCGGGAAATCCCGCGACTGACACATATGCTTTGTA
TGATGGTGACGAGTTGCCAATCTGTAGGAACTCTGCAACCAGTGCACCAA
CCACAGCACCAGCCAGTCAGGGACCCTCTCCGGTATCTTCTCCAGTGTCT
TCTTCTTCACCGTCTTCTTCGGGAGAGCAGGGCTCAGACGAGCCGTCTAC
TCCCAATGATACTTCTAGTGGAGCCGTTGGAGCGGACGAAATTGAAGCAA
GCAGTTCTCCGTCAAACCCATCATCACCATCACCATCAACAGAAGAAGCG
ACTTCGACGACAAGCTCCGCTGAAGATAGCGGTAGTGGCCCTACTTGCTT
CCCGTCTGATGCCACTGTGGAACTCGAGGATGGTTCCATCAAAGCCATGA
GTTCGTTGCGCATCGGTGATCGAGTGAAAGTTGCTCATCCCAACGAATAT
AGCGAAATCTTCTTCTTTTCTCACAACCACCCGGACAAGCACTCCGAGTT
TGTTAACATTAGAACCTCAAGGGATAGTGTATCTCTGACCCTGTCGCCAG
GACACTTGGTGTACATTAACGGAGCTTTGGCGGAAGCCTCGAGCATGCGC
GCTGGAGACAAGGTATCCATCTCACATGACTCAAAGACAGCAGTTGTGAC
AGAAGTGTCCAGAGTTGTGGCTCCGGGATTGCACAACCCGCATACCTTGC
ATGGTGATATCGTTGTGAATGGAGTGATTGCGAGCACGTACACGTCTGCT
GTACACCCTGTACTTGCGAAGGTGCTATTGACTCCACTGAAGGTTGCATA
CCGCATGTTAAAAACACGTGAGAACATGGAGGTTATGAACAGGGTGGTGC
TTCGCACTCTGGATGCAACGTACTGGAGGAATTAA