Gcaud2989.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2989.t1
Unique Name	Gcaud2989.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	651

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_641_length_20422_cov_4.560720	contig	NODE_641_length_20422_cov_4.560720:12678..14630 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LSR2
Preferred name	AMO1
PFAMs	Cu_amine_oxid,Cu_amine_oxidN2,Cu_amine_oxidN3
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00062,RC00189,RC00676,RC01052
KEGG ko	ko:K00276,ko:K13281
KEGG Reaction	R02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathway	ko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110
GOs	GO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0006873,GO:0006875,GO:0006878,GO:0008131,GO:0008150,GO:0008152,GO:0009056,GO:0009308,GO:0009310,GO:0009636,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0019725,GO:0030003,GO:0042221,GO:0042592,GO:0042763,GO:0042764,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048038,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071704,GO:0071941,GO:0097237,GO:0098754,GO:0098771,GO:1901564,GO:1901565,GO:1901575,GO:1990748
Evalue	2.63e-264
EggNOG OGs	COG3733@1\|root,KOG1186@2759\|Eukaryota
EC	1.4.3.21
Description	tryptamine:oxygen oxidoreductase (deaminating) activity
COG category	Q
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2989	Gcaud2989	Gracilaria caudata M_176_S67 male	gene	NODE_641_length_20422_cov_4.560720 12678..14630 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2989.t1.start1	Gcaud2989.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_641_length_20422_cov_4.560720 12678..12680 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2989.t1.CDS1	Gcaud2989.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_641_length_20422_cov_4.560720 12678..14630 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2989.t1.exon1	Gcaud2989.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_641_length_20422_cov_4.560720 12678..14630 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2989.t1.stop1	Gcaud2989.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_641_length_20422_cov_4.560720 14628..14630 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2989.t1	Gcaud2989.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_641_length_20422_cov_4.560720 12678..14630 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_641_length_20422_cov_4.560720:12678..14630+
coding sequence from alignment at NODE_641_length_20422_cov_4.560720:12678..14630+

mRNA sequence

>Gcaud2989.t1 ID=Gcaud2989.t1|Name=Gcaud2989.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=651bp
MAPASVNSAQAPHKLPESESLSPLTSTEIREASRLARDHLSDDIRFSAIT
LDETYATRAAVVIAILPGDGTAYKLRIELKSSKVEELPIARGAQPVLTPD
DCDLAETIVKRDSRVRELISRRYGMYDIDSLVCDPWSVHIAGEYEPLHFR
QDGQSARLVQTFLYRRDHPVDNHYAHPIDILPVVDLNMKTVVTVEGVERP
PPLLSNSAVNYHPDLLQENDYLPSSFRNTLRPLQVVQPEGPSFKVRDNYV
EWEKWSFTIGFNYREGLVLYDINFDNRSVVKRASLVEMAVPYADTHPPFE
RKCAFDVGDYGLGYCANTLEVGCDCLGVIRYFDAVLSDSRGEPYVIKKAI
CMHEEDVGLLYKHVEYRTGHSESRRARRLVISFIATVVNYEYLFYWYLHH
DGSISHEIKLSGELSTNLLSEGETVPTAGVMVAPGVNAQIHQHMFCARLE
MAVDGVRNSVEEVNLVAAESGEENPYGNAFRVQSTLLRTEQEGQRDAAAA
RTWRIFNPHKENSISGKKVAYKLVPYTFGSFQPPLLTTDDSAVSKRGWFA
KKALWVTPYDKDENFPAGEFPTQNTGGDGLPRWTAKNRSVVDERIVVWHS
FGVAHVPRTEDFPVMPCESTGFSLKPDCFLLGNPGIDLPPLTDRTSLCCS
*

spliced messenger RNA

>Gcaud2989.t1 ID=Gcaud2989.t1|Name=Gcaud2989.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1953bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:12678..14630+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCAGCATCCGTAAATTCAGCACAAGCCCCACACAAATTACCAGA
GTCCGAGAGCCTGAGCCCATTAACTTCGACAGAAATTCGGGAAGCATCTC
GTTTAGCGCGAGATCACTTGTCTGACGACATACGATTCTCTGCCATAACA
TTGGATGAGACATATGCAACTCGCGCCGCCGTGGTAATTGCCATCTTGCC
CGGAGATGGCACAGCTTACAAGCTTCGAATAGAGCTCAAGTCTTCTAAAG
TCGAAGAACTTCCTATTGCACGAGGTGCCCAGCCCGTACTCACGCCAGAT
GACTGCGACCTGGCGGAAACGATCGTAAAGCGTGACTCCCGCGTGCGGGA
GTTGATTTCTAGAAGGTATGGAATGTATGATATCGACTCCTTAGTTTGCG
ACCCGTGGAGTGTGCATATTGCGGGAGAGTACGAACCTTTGCATTTTCGA
CAAGACGGTCAGTCGGCGAGACTAGTTCAAACTTTCCTATACAGACGTGA
TCATCCTGTGGACAACCATTATGCTCATCCAATTGACATTCTTCCGGTGG
TCGATCTCAACATGAAAACGGTGGTAACTGTCGAAGGAGTGGAACGCCCT
CCGCCTTTATTATCCAATTCAGCTGTTAATTATCATCCAGATCTTCTTCA
GGAAAATGATTACCTTCCTTCCAGCTTTCGTAACACATTGCGGCCACTTC
AAGTAGTACAACCAGAAGGTCCCAGCTTCAAGGTTCGAGATAATTACGTG
GAATGGGAAAAATGGAGCTTCACCATTGGCTTTAACTATCGCGAGGGGCT
TGTTTTGTACGACATTAACTTCGACAATCGCTCTGTTGTGAAGCGAGCAA
GCCTGGTGGAAATGGCGGTACCATATGCGGATACACATCCTCCATTTGAG
CGAAAATGTGCTTTCGACGTTGGCGACTACGGGTTAGGGTATTGCGCCAA
TACCCTAGAGGTTGGATGTGATTGCCTCGGTGTTATTCGCTACTTTGACG
CAGTTCTGTCTGACAGCAGAGGAGAGCCGTATGTTATCAAGAAGGCAATA
TGTATGCACGAGGAAGACGTAGGCCTTCTTTATAAGCACGTAGAATATCG
CACAGGTCATTCTGAAAGCAGACGTGCAAGAAGACTAGTTATCTCCTTCA
TTGCAACAGTTGTGAACTACGAATATCTGTTTTACTGGTATCTTCATCAC
GATGGCTCGATTTCACATGAAATCAAACTTTCCGGAGAACTATCTACCAA
CCTTCTTAGTGAAGGAGAAACTGTACCCACTGCGGGGGTAATGGTGGCGC
CTGGGGTGAATGCACAGATCCACCAGCACATGTTTTGCGCACGTTTGGAA
ATGGCTGTCGATGGCGTTCGCAACTCCGTGGAGGAAGTGAATTTAGTTGC
CGCGGAATCTGGCGAAGAGAATCCTTACGGAAATGCCTTCCGGGTGCAAA
GCACTTTGCTCCGAACGGAACAAGAAGGTCAACGCGATGCAGCAGCCGCT
CGCACATGGCGCATTTTCAACCCGCACAAAGAAAACAGTATATCTGGAAA
AAAGGTTGCATACAAGCTTGTGCCGTATACTTTTGGCTCCTTCCAGCCTC
CCCTGCTCACCACAGATGACAGCGCAGTGTCAAAGCGTGGCTGGTTTGCG
AAGAAAGCGTTGTGGGTCACCCCGTATGATAAGGATGAAAACTTTCCAGC
CGGAGAGTTTCCAACTCAGAACACAGGCGGCGATGGTCTACCACGATGGA
CGGCGAAGAATCGCTCGGTGGTGGACGAGCGCATCGTGGTGTGGCACAGT
TTCGGAGTTGCACATGTGCCGAGAACTGAAGATTTCCCTGTGATGCCGTG
CGAGAGCACTGGTTTCAGTTTGAAGCCGGATTGCTTCTTGCTTGGAAATC
CAGGAATCGATCTGCCCCCACTAACGGACCGTACAAGTCTGTGTTGCTCA
TGA

protein sequence of Gcaud2989.t1

>Gcaud2989.t1 ID=Gcaud2989.t1|Name=Gcaud2989.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=651bp
MAPASVNSAQAPHKLPESESLSPLTSTEIREASRLARDHLSDDIRFSAIT
LDETYATRAAVVIAILPGDGTAYKLRIELKSSKVEELPIARGAQPVLTPD
DCDLAETIVKRDSRVRELISRRYGMYDIDSLVCDPWSVHIAGEYEPLHFR
QDGQSARLVQTFLYRRDHPVDNHYAHPIDILPVVDLNMKTVVTVEGVERP
PPLLSNSAVNYHPDLLQENDYLPSSFRNTLRPLQVVQPEGPSFKVRDNYV
EWEKWSFTIGFNYREGLVLYDINFDNRSVVKRASLVEMAVPYADTHPPFE
RKCAFDVGDYGLGYCANTLEVGCDCLGVIRYFDAVLSDSRGEPYVIKKAI
CMHEEDVGLLYKHVEYRTGHSESRRARRLVISFIATVVNYEYLFYWYLHH
DGSISHEIKLSGELSTNLLSEGETVPTAGVMVAPGVNAQIHQHMFCARLE
MAVDGVRNSVEEVNLVAAESGEENPYGNAFRVQSTLLRTEQEGQRDAAAA
RTWRIFNPHKENSISGKKVAYKLVPYTFGSFQPPLLTTDDSAVSKRGWFA
KKALWVTPYDKDENFPAGEFPTQNTGGDGLPRWTAKNRSVVDERIVVWHS
FGVAHVPRTEDFPVMPCESTGFSLKPDCFLLGNPGIDLPPLTDRTSLCCS
*

mRNA from alignment at NODE_641_length_20422_cov_4.560720:12678..14630+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2989.t1 ID=Gcaud2989.t1|Name=Gcaud2989.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1953bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:12678..14630+ (Gracilaria caudata M_176_S67 male)
ATGGCTCCAGCATCCGTAAATTCAGCACAAGCCCCACACAAATTACCAGA
GTCCGAGAGCCTGAGCCCATTAACTTCGACAGAAATTCGGGAAGCATCTC
GTTTAGCGCGAGATCACTTGTCTGACGACATACGATTCTCTGCCATAACA
TTGGATGAGACATATGCAACTCGCGCCGCCGTGGTAATTGCCATCTTGCC
CGGAGATGGCACAGCTTACAAGCTTCGAATAGAGCTCAAGTCTTCTAAAG
TCGAAGAACTTCCTATTGCACGAGGTGCCCAGCCCGTACTCACGCCAGAT
GACTGCGACCTGGCGGAAACGATCGTAAAGCGTGACTCCCGCGTGCGGGA
GTTGATTTCTAGAAGGTATGGAATGTATGATATCGACTCCTTAGTTTGCG
ACCCGTGGAGTGTGCATATTGCGGGAGAGTACGAACCTTTGCATTTTCGA
CAAGACGGTCAGTCGGCGAGACTAGTTCAAACTTTCCTATACAGACGTGA
TCATCCTGTGGACAACCATTATGCTCATCCAATTGACATTCTTCCGGTGG
TCGATCTCAACATGAAAACGGTGGTAACTGTCGAAGGAGTGGAACGCCCT
CCGCCTTTATTATCCAATTCAGCTGTTAATTATCATCCAGATCTTCTTCA
GGAAAATGATTACCTTCCTTCCAGCTTTCGTAACACATTGCGGCCACTTC
AAGTAGTACAACCAGAAGGTCCCAGCTTCAAGGTTCGAGATAATTACGTG
GAATGGGAAAAATGGAGCTTCACCATTGGCTTTAACTATCGCGAGGGGCT
TGTTTTGTACGACATTAACTTCGACAATCGCTCTGTTGTGAAGCGAGCAA
GCCTGGTGGAAATGGCGGTACCATATGCGGATACACATCCTCCATTTGAG
CGAAAATGTGCTTTCGACGTTGGCGACTACGGGTTAGGGTATTGCGCCAA
TACCCTAGAGGTTGGATGTGATTGCCTCGGTGTTATTCGCTACTTTGACG
CAGTTCTGTCTGACAGCAGAGGAGAGCCGTATGTTATCAAGAAGGCAATA
TGTATGCACGAGGAAGACGTAGGCCTTCTTTATAAGCACGTAGAATATCG
CACAGGTCATTCTGAAAGCAGACGTGCAAGAAGACTAGTTATCTCCTTCA
TTGCAACAGTTGTGAACTACGAATATCTGTTTTACTGGTATCTTCATCAC
GATGGCTCGATTTCACATGAAATCAAACTTTCCGGAGAACTATCTACCAA
CCTTCTTAGTGAAGGAGAAACTGTACCCACTGCGGGGGTAATGGTGGCGC
CTGGGGTGAATGCACAGATCCACCAGCACATGTTTTGCGCACGTTTGGAA
ATGGCTGTCGATGGCGTTCGCAACTCCGTGGAGGAAGTGAATTTAGTTGC
CGCGGAATCTGGCGAAGAGAATCCTTACGGAAATGCCTTCCGGGTGCAAA
GCACTTTGCTCCGAACGGAACAAGAAGGTCAACGCGATGCAGCAGCCGCT
CGCACATGGCGCATTTTCAACCCGCACAAAGAAAACAGTATATCTGGAAA
AAAGGTTGCATACAAGCTTGTGCCGTATACTTTTGGCTCCTTCCAGCCTC
CCCTGCTCACCACAGATGACAGCGCAGTGTCAAAGCGTGGCTGGTTTGCG
AAGAAAGCGTTGTGGGTCACCCCGTATGATAAGGATGAAAACTTTCCAGC
CGGAGAGTTTCCAACTCAGAACACAGGCGGCGATGGTCTACCACGATGGA
CGGCGAAGAATCGCTCGGTGGTGGACGAGCGCATCGTGGTGTGGCACAGT
TTCGGAGTTGCACATGTGCCGAGAACTGAAGATTTCCCTGTGATGCCGTG
CGAGAGCACTGGTTTCAGTTTGAAGCCGGATTGCTTCTTGCTTGGAAATC
CAGGAATCGATCTGCCCCCACTAACGGACCGTACAAGTCTGTGTTGCTCA
TGA

Coding sequence (CDS) from alignment at NODE_641_length_20422_cov_4.560720:12678..14630+

>Gcaud2989.t1 ID=Gcaud2989.t1|Name=Gcaud2989.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1953bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:12678..14630+ (Gracilaria caudata M_176_S67 male)
ATGGCTCCAGCATCCGTAAATTCAGCACAAGCCCCACACAAATTACCAGA
GTCCGAGAGCCTGAGCCCATTAACTTCGACAGAAATTCGGGAAGCATCTC
GTTTAGCGCGAGATCACTTGTCTGACGACATACGATTCTCTGCCATAACA
TTGGATGAGACATATGCAACTCGCGCCGCCGTGGTAATTGCCATCTTGCC
CGGAGATGGCACAGCTTACAAGCTTCGAATAGAGCTCAAGTCTTCTAAAG
TCGAAGAACTTCCTATTGCACGAGGTGCCCAGCCCGTACTCACGCCAGAT
GACTGCGACCTGGCGGAAACGATCGTAAAGCGTGACTCCCGCGTGCGGGA
GTTGATTTCTAGAAGGTATGGAATGTATGATATCGACTCCTTAGTTTGCG
ACCCGTGGAGTGTGCATATTGCGGGAGAGTACGAACCTTTGCATTTTCGA
CAAGACGGTCAGTCGGCGAGACTAGTTCAAACTTTCCTATACAGACGTGA
TCATCCTGTGGACAACCATTATGCTCATCCAATTGACATTCTTCCGGTGG
TCGATCTCAACATGAAAACGGTGGTAACTGTCGAAGGAGTGGAACGCCCT
CCGCCTTTATTATCCAATTCAGCTGTTAATTATCATCCAGATCTTCTTCA
GGAAAATGATTACCTTCCTTCCAGCTTTCGTAACACATTGCGGCCACTTC
AAGTAGTACAACCAGAAGGTCCCAGCTTCAAGGTTCGAGATAATTACGTG
GAATGGGAAAAATGGAGCTTCACCATTGGCTTTAACTATCGCGAGGGGCT
TGTTTTGTACGACATTAACTTCGACAATCGCTCTGTTGTGAAGCGAGCAA
GCCTGGTGGAAATGGCGGTACCATATGCGGATACACATCCTCCATTTGAG
CGAAAATGTGCTTTCGACGTTGGCGACTACGGGTTAGGGTATTGCGCCAA
TACCCTAGAGGTTGGATGTGATTGCCTCGGTGTTATTCGCTACTTTGACG
CAGTTCTGTCTGACAGCAGAGGAGAGCCGTATGTTATCAAGAAGGCAATA
TGTATGCACGAGGAAGACGTAGGCCTTCTTTATAAGCACGTAGAATATCG
CACAGGTCATTCTGAAAGCAGACGTGCAAGAAGACTAGTTATCTCCTTCA
TTGCAACAGTTGTGAACTACGAATATCTGTTTTACTGGTATCTTCATCAC
GATGGCTCGATTTCACATGAAATCAAACTTTCCGGAGAACTATCTACCAA
CCTTCTTAGTGAAGGAGAAACTGTACCCACTGCGGGGGTAATGGTGGCGC
CTGGGGTGAATGCACAGATCCACCAGCACATGTTTTGCGCACGTTTGGAA
ATGGCTGTCGATGGCGTTCGCAACTCCGTGGAGGAAGTGAATTTAGTTGC
CGCGGAATCTGGCGAAGAGAATCCTTACGGAAATGCCTTCCGGGTGCAAA
GCACTTTGCTCCGAACGGAACAAGAAGGTCAACGCGATGCAGCAGCCGCT
CGCACATGGCGCATTTTCAACCCGCACAAAGAAAACAGTATATCTGGAAA
AAAGGTTGCATACAAGCTTGTGCCGTATACTTTTGGCTCCTTCCAGCCTC
CCCTGCTCACCACAGATGACAGCGCAGTGTCAAAGCGTGGCTGGTTTGCG
AAGAAAGCGTTGTGGGTCACCCCGTATGATAAGGATGAAAACTTTCCAGC
CGGAGAGTTTCCAACTCAGAACACAGGCGGCGATGGTCTACCACGATGGA
CGGCGAAGAATCGCTCGGTGGTGGACGAGCGCATCGTGGTGTGGCACAGT
TTCGGAGTTGCACATGTGCCGAGAACTGAAGATTTCCCTGTGATGCCGTG
CGAGAGCACTGGTTTCAGTTTGAAGCCGGATTGCTTCTTGCTTGGAAATC
CAGGAATCGATCTGCCCCCACTAACGGACCGTACAAGTCTGTGTTGCTCA
TGA