Gcaud2988.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2988.t1
Unique NameGcaud2988.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length493
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_641_length_20422_cov_4.560720contigNODE_641_length_20422_cov_4.560720:10706..12509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_1886
PFAMsPhosphodiest
Max annot lvl1117|Cyanobacteria
Evalue3.4e-191
EggNOG OGsCOG1524@1|root,COG1524@2|Bacteria,1G0AH@1117|Cyanobacteria,1HKYG@1161|Nostocales
DescriptionType I phosphodiesterase / nucleotide pyrophosphatase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2988Gcaud2988Gracilaria caudata M_176_S67 malegeneNODE_641_length_20422_cov_4.560720 10706..12509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2988.t1Gcaud2988.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_641_length_20422_cov_4.560720 10706..12509 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2988.t1.stop1Gcaud2988.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_641_length_20422_cov_4.560720 10706..10708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2988.t1.CDS1Gcaud2988.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_641_length_20422_cov_4.560720 10706..12000 -
Gcaud2988.t1.CDS2Gcaud2988.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_641_length_20422_cov_4.560720 12226..12229 -
Gcaud2988.t1.CDS3Gcaud2988.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_641_length_20422_cov_4.560720 12330..12509 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2988.t1.exon1Gcaud2988.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_641_length_20422_cov_4.560720 10706..12000 -
Gcaud2988.t1.exon2Gcaud2988.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_641_length_20422_cov_4.560720 12226..12229 -
Gcaud2988.t1.exon3Gcaud2988.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_641_length_20422_cov_4.560720 12330..12509 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2988.t1.intron1Gcaud2988.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_641_length_20422_cov_4.560720 12001..12225 -
Gcaud2988.t1.intron2Gcaud2988.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_641_length_20422_cov_4.560720 12230..12329 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2988.t1.start1Gcaud2988.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_641_length_20422_cov_4.560720 12507..12509 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2988.t1 ID=Gcaud2988.t1|Name=Gcaud2988.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=493bp
MEPFNPIIIFQRKQYAFACALGTVAIFMSSKAALESGTNQQNRTAEIRDK
MPRYSTVSTKTDHVMLPISATLPAVTTTTQSTFLTGDLPCEHGIVGNGWY
SREECEMKFWKQSNKLVQRPKVWEEARKRDASKSFTVANTLWWYNMYSST
DYSVTVRPTYPADGAKYPDIWTHPAELRDEVKEELGNFPLFNFWGPLSDI
TSSKWIANCAKFIENKFSPTLHLVYLPHLDYCQQKVGPEADLIAKELAEI
DAVVEDLVNFFEAKDIQCILVSEYAIMPVSRPIHINRALREAGLIQLRDE
HGLECLDAGASRAFAVADHQVAHVYVNDDSVRDMVRKVISELDGVDFVLD
ENGKKDMGLNHERAGDFVAVSEKDAWFTYYYWLDDSVAPDFARCVDIHRK
PGFDPVELFVDPNIRFPTLKAAYRLAQKKLGFRYLMDVIPLDATLVKGSH
GRNQYEGNRSALLMTKRKDLVNGKEKVEATEVHDLILRHLGL*
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spliced messenger RNA

>Gcaud2988.t1 ID=Gcaud2988.t1|Name=Gcaud2988.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1479bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:10706..12509- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCATTCAACCCAATAATCATCTTCCAGCGCAAGCAGTATGCATT
TGCGTGCGCATTGGGAACGGTTGCTATCTTCATGAGCTCGAAGGCCGCTT
TGGAAAGTGGAACAAATCAGCAGAATCGTACAGCTGAAATACGGGATAAA
ATGCCCCGCTACAGTACAGTATCTACGAAGACCGATCATGTTATGCTTCC
CATCTCAGCGACTCTACCTGCAGTAACCACAACCACTCAGTCTACTTTTC
TCACGGGAGACTTGCCCTGTGAACATGGCATTGTTGGGAACGGGTGGTAT
TCTCGTGAAGAATGCGAAATGAAGTTCTGGAAGCAATCGAACAAACTTGT
CCAGCGACCGAAGGTATGGGAAGAGGCCAGGAAGCGAGACGCATCCAAAT
CTTTCACCGTAGCCAATACTTTATGGTGGTATAACATGTACTCTTCTACT
GATTATTCAGTAACGGTACGGCCCACGTATCCGGCTGATGGAGCCAAATA
TCCTGACATATGGACCCATCCTGCAGAGCTACGCGATGAAGTGAAGGAGG
AGCTCGGCAACTTTCCGCTTTTCAACTTCTGGGGTCCGTTATCAGACATT
ACTTCTTCTAAATGGATTGCAAACTGCGCAAAGTTTATTGAGAACAAATT
CAGCCCCACGCTGCATCTTGTATATTTACCTCATCTTGACTACTGTCAAC
AAAAGGTAGGGCCTGAAGCTGACTTGATTGCGAAAGAACTTGCTGAAATT
GATGCTGTTGTTGAAGACCTTGTCAACTTCTTCGAGGCGAAAGACATACA
ATGTATATTAGTCAGCGAGTATGCTATTATGCCTGTGTCGCGACCAATAC
ATATCAACCGTGCTCTGCGTGAAGCGGGTCTCATTCAATTACGTGATGAA
CATGGCTTAGAGTGTTTGGATGCCGGAGCCTCTCGGGCTTTTGCTGTTGC
AGATCATCAAGTCGCTCACGTGTACGTGAATGATGATTCTGTGAGGGATA
TGGTTCGAAAGGTTATCAGTGAGCTTGATGGCGTAGATTTTGTATTGGAT
GAGAATGGCAAAAAAGATATGGGACTTAATCATGAACGAGCCGGGGACTT
TGTAGCAGTTTCAGAGAAGGACGCGTGGTTTACTTACTACTACTGGCTTG
ACGATTCTGTTGCGCCGGATTTCGCTCGTTGCGTTGACATCCATAGAAAG
CCTGGTTTCGACCCCGTGGAGCTTTTTGTAGATCCTAACATTCGCTTTCC
GACCTTGAAAGCTGCATATCGGTTAGCACAAAAGAAGCTTGGTTTCCGGT
ATCTAATGGATGTTATACCTCTGGATGCCACGTTGGTAAAGGGATCTCAT
GGTAGAAACCAGTACGAAGGCAACCGGAGTGCCTTGCTTATGACGAAGAG
AAAAGACTTGGTTAATGGCAAAGAAAAGGTGGAAGCAACTGAAGTGCATG
ACCTTATCTTGAGACATTTGGGCTTATAG
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protein sequence of Gcaud2988.t1

>Gcaud2988.t1 ID=Gcaud2988.t1|Name=Gcaud2988.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=493bp
MEPFNPIIIFQRKQYAFACALGTVAIFMSSKAALESGTNQQNRTAEIRDK
MPRYSTVSTKTDHVMLPISATLPAVTTTTQSTFLTGDLPCEHGIVGNGWY
SREECEMKFWKQSNKLVQRPKVWEEARKRDASKSFTVANTLWWYNMYSST
DYSVTVRPTYPADGAKYPDIWTHPAELRDEVKEELGNFPLFNFWGPLSDI
TSSKWIANCAKFIENKFSPTLHLVYLPHLDYCQQKVGPEADLIAKELAEI
DAVVEDLVNFFEAKDIQCILVSEYAIMPVSRPIHINRALREAGLIQLRDE
HGLECLDAGASRAFAVADHQVAHVYVNDDSVRDMVRKVISELDGVDFVLD
ENGKKDMGLNHERAGDFVAVSEKDAWFTYYYWLDDSVAPDFARCVDIHRK
PGFDPVELFVDPNIRFPTLKAAYRLAQKKLGFRYLMDVIPLDATLVKGSH
GRNQYEGNRSALLMTKRKDLVNGKEKVEATEVHDLILRHLGL*
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mRNA from alignment at NODE_641_length_20422_cov_4.560720:10706..12509-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2988.t1 ID=Gcaud2988.t1|Name=Gcaud2988.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1804bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:10706..12509- (Gracilaria caudata M_176_S67 male)
ATGGAACCATTCAACCCAATAATCATCTTCCAGCGCAAGCAGTATGCATT
TGCGTGCGCATTGGGAACGGTTGCTATCTTCATGAGCTCGAAGGCCGCTT
TGGAAAGTGGAACAAATCAGCAGAATCGTACAGCTGAAATACGGGATAAA
ATGCCCCGCTACAGTACAGTATCTACGAAGGTAATAGATACTATGTGCAA
TACAATAAAACTTTATTGAATAAAGCCATTCGTTCGTTGGTAATCCTGAT
TGACACCGCCGTTGTCACAACGGTACACAGACCGGTACGTTACCAGAGAA
GGTTTCACGCCTTCTTGCGTCGATGAAGATCCGATTCGACCGCATCACGG
CGAAGTTGTCGTCTGAGCTGAAGTAAAGTCACGCATTCTTTCTTCATTTC
CACGCAATGACCAACCCTTCTCTCAACCGAGTTGCGGTTGTCAACATCGT
CGCCCTCTCGCCGCATCTAATTGGGGAACATACTCCTTTTCTTTCCACCT
ATTCGTCAGATCATGTTATGCTTCCCATCTCAGCGACTCTACCTGCAGTA
ACCACAACCACTCAGTCTACTTTTCTCACGGGAGACTTGCCCTGTGAACA
TGGCATTGTTGGGAACGGGTGGTATTCTCGTGAAGAATGCGAAATGAAGT
TCTGGAAGCAATCGAACAAACTTGTCCAGCGACCGAAGGTATGGGAAGAG
GCCAGGAAGCGAGACGCATCCAAATCTTTCACCGTAGCCAATACTTTATG
GTGGTATAACATGTACTCTTCTACTGATTATTCAGTAACGGTACGGCCCA
CGTATCCGGCTGATGGAGCCAAATATCCTGACATATGGACCCATCCTGCA
GAGCTACGCGATGAAGTGAAGGAGGAGCTCGGCAACTTTCCGCTTTTCAA
CTTCTGGGGTCCGTTATCAGACATTACTTCTTCTAAATGGATTGCAAACT
GCGCAAAGTTTATTGAGAACAAATTCAGCCCCACGCTGCATCTTGTATAT
TTACCTCATCTTGACTACTGTCAACAAAAGGTAGGGCCTGAAGCTGACTT
GATTGCGAAAGAACTTGCTGAAATTGATGCTGTTGTTGAAGACCTTGTCA
ACTTCTTCGAGGCGAAAGACATACAATGTATATTAGTCAGCGAGTATGCT
ATTATGCCTGTGTCGCGACCAATACATATCAACCGTGCTCTGCGTGAAGC
GGGTCTCATTCAATTACGTGATGAACATGGCTTAGAGTGTTTGGATGCCG
GAGCCTCTCGGGCTTTTGCTGTTGCAGATCATCAAGTCGCTCACGTGTAC
GTGAATGATGATTCTGTGAGGGATATGGTTCGAAAGGTTATCAGTGAGCT
TGATGGCGTAGATTTTGTATTGGATGAGAATGGCAAAAAAGATATGGGAC
TTAATCATGAACGAGCCGGGGACTTTGTAGCAGTTTCAGAGAAGGACGCG
TGGTTTACTTACTACTACTGGCTTGACGATTCTGTTGCGCCGGATTTCGC
TCGTTGCGTTGACATCCATAGAAAGCCTGGTTTCGACCCCGTGGAGCTTT
TTGTAGATCCTAACATTCGCTTTCCGACCTTGAAAGCTGCATATCGGTTA
GCACAAAAGAAGCTTGGTTTCCGGTATCTAATGGATGTTATACCTCTGGA
TGCCACGTTGGTAAAGGGATCTCATGGTAGAAACCAGTACGAAGGCAACC
GGAGTGCCTTGCTTATGACGAAGAGAAAAGACTTGGTTAATGGCAAAGAA
AAGGTGGAAGCAACTGAAGTGCATGACCTTATCTTGAGACATTTGGGCTT
ATAG
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Coding sequence (CDS) from alignment at NODE_641_length_20422_cov_4.560720:10706..12509-

>Gcaud2988.t1 ID=Gcaud2988.t1|Name=Gcaud2988.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1479bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:10706..12509- (Gracilaria caudata M_176_S67 male)
ATGGAACCATTCAACCCAATAATCATCTTCCAGCGCAAGCAGTATGCATT
TGCGTGCGCATTGGGAACGGTTGCTATCTTCATGAGCTCGAAGGCCGCTT
TGGAAAGTGGAACAAATCAGCAGAATCGTACAGCTGAAATACGGGATAAA
ATGCCCCGCTACAGTACAGTATCTACGAAGACCGATCATGTTATGCTTCC
CATCTCAGCGACTCTACCTGCAGTAACCACAACCACTCAGTCTACTTTTC
TCACGGGAGACTTGCCCTGTGAACATGGCATTGTTGGGAACGGGTGGTAT
TCTCGTGAAGAATGCGAAATGAAGTTCTGGAAGCAATCGAACAAACTTGT
CCAGCGACCGAAGGTATGGGAAGAGGCCAGGAAGCGAGACGCATCCAAAT
CTTTCACCGTAGCCAATACTTTATGGTGGTATAACATGTACTCTTCTACT
GATTATTCAGTAACGGTACGGCCCACGTATCCGGCTGATGGAGCCAAATA
TCCTGACATATGGACCCATCCTGCAGAGCTACGCGATGAAGTGAAGGAGG
AGCTCGGCAACTTTCCGCTTTTCAACTTCTGGGGTCCGTTATCAGACATT
ACTTCTTCTAAATGGATTGCAAACTGCGCAAAGTTTATTGAGAACAAATT
CAGCCCCACGCTGCATCTTGTATATTTACCTCATCTTGACTACTGTCAAC
AAAAGGTAGGGCCTGAAGCTGACTTGATTGCGAAAGAACTTGCTGAAATT
GATGCTGTTGTTGAAGACCTTGTCAACTTCTTCGAGGCGAAAGACATACA
ATGTATATTAGTCAGCGAGTATGCTATTATGCCTGTGTCGCGACCAATAC
ATATCAACCGTGCTCTGCGTGAAGCGGGTCTCATTCAATTACGTGATGAA
CATGGCTTAGAGTGTTTGGATGCCGGAGCCTCTCGGGCTTTTGCTGTTGC
AGATCATCAAGTCGCTCACGTGTACGTGAATGATGATTCTGTGAGGGATA
TGGTTCGAAAGGTTATCAGTGAGCTTGATGGCGTAGATTTTGTATTGGAT
GAGAATGGCAAAAAAGATATGGGACTTAATCATGAACGAGCCGGGGACTT
TGTAGCAGTTTCAGAGAAGGACGCGTGGTTTACTTACTACTACTGGCTTG
ACGATTCTGTTGCGCCGGATTTCGCTCGTTGCGTTGACATCCATAGAAAG
CCTGGTTTCGACCCCGTGGAGCTTTTTGTAGATCCTAACATTCGCTTTCC
GACCTTGAAAGCTGCATATCGGTTAGCACAAAAGAAGCTTGGTTTCCGGT
ATCTAATGGATGTTATACCTCTGGATGCCACGTTGGTAAAGGGATCTCAT
GGTAGAAACCAGTACGAAGGCAACCGGAGTGCCTTGCTTATGACGAAGAG
AAAAGACTTGGTTAATGGCAAAGAAAAGGTGGAAGCAACTGAAGTGCATG
ACCTTATCTTGAGACATTTGGGCTTATAG
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