Gcaud2984.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2984.t1
Unique Name	Gcaud2984.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	381

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_641_length_20422_cov_4.560720	contig	NODE_641_length_20422_cov_4.560720:463..1605 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4641.GSMUA_Achr1P07250_001
PFAMs	Glyco_transf_92
Max annot lvl	35493\|Streptophyta
Evalue	6.7e-25
EggNOG OGs	COG0463@1\|root,2SEK0@2759\|Eukaryota,389AB@33090\|Viridiplantae,3GYB6@35493\|Streptophyta,3M9CN@4447\|Liliopsida
Description	Glycosyl transferase family 2
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2984	Gcaud2984	Gracilaria caudata M_176_S67 male	gene	NODE_641_length_20422_cov_4.560720 463..1605 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2984.t1.start1	Gcaud2984.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_641_length_20422_cov_4.560720 463..465 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2984.t1.CDS1	Gcaud2984.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_641_length_20422_cov_4.560720 463..1605 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2984.t1.exon1	Gcaud2984.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_641_length_20422_cov_4.560720 463..1605 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2984.t1.stop1	Gcaud2984.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_641_length_20422_cov_4.560720 1603..1605 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2984.t1	Gcaud2984.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_641_length_20422_cov_4.560720 463..1605 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_641_length_20422_cov_4.560720:463..1605+
coding sequence from alignment at NODE_641_length_20422_cov_4.560720:463..1605+

mRNA sequence

>Gcaud2984.t1 ID=Gcaud2984.t1|Name=Gcaud2984.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=381bp
MNRELRIGERLSLLLSPTILEGIAELTSSSSLLDHVHAMKKMENGSYILP
TDAFWEGQIDPRMQSGDGRYEVCLMTQEKIFAEFLPEWVDYHRKVGVDHV
YVYDNNAPHNISKLFEHRNDVEIVYWPWHRSQIQAQNHFILNGRRRCKWA
ILTDVDEYLMIQAMERADEDNALKIYLRSLKEEVYCSQIKLGCVVLGSSG
HRIRPRIPLAEAYWHLAFRQDNLSKPIVWLGHAFPDSVVHSVNLAKGYYT
LSNSTRYRTRRNIRMKMIHMKFKSWYDYLRKGRGGRNSMAVKAWNVSSEW
TEENASRKHLQKINCESFTDFRTSWRRVVSRNVRKAKIVGYGEKERRHNA
VKKIGYAWKHQHDLESNVLINSIIERESES*

spliced messenger RNA

>Gcaud2984.t1 ID=Gcaud2984.t1|Name=Gcaud2984.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:463..1605+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCGTGAACTTCGTATTGGAGAACGGTTGTCTCTACTTCTATCACC
AACGATTTTGGAAGGGATTGCTGAATTGACGTCTTCTTCTTCGCTGCTAG
ATCATGTCCATGCCATGAAGAAAATGGAGAATGGGTCGTACATACTTCCG
ACCGATGCGTTTTGGGAGGGACAGATTGATCCTCGCATGCAAAGTGGGGA
TGGGAGGTATGAGGTGTGTTTGATGACGCAAGAAAAGATATTTGCAGAGT
TTCTTCCGGAATGGGTTGACTACCACCGTAAAGTTGGAGTGGATCACGTG
TATGTATATGATAATAATGCACCACACAACATATCCAAACTGTTTGAGCA
CAGAAATGATGTGGAGATTGTGTACTGGCCATGGCACCGCTCTCAGATAC
AAGCTCAAAACCATTTCATCTTGAATGGACGTCGACGATGTAAATGGGCA
ATCCTAACTGATGTAGATGAATATCTGATGATTCAGGCAATGGAAAGGGC
TGATGAAGACAATGCTTTGAAGATATATTTGAGGAGCCTAAAGGAAGAGG
TCTATTGTTCTCAGATAAAGTTGGGGTGCGTTGTTCTTGGTTCATCTGGG
CATAGAATTCGACCAAGAATACCTCTTGCAGAAGCCTATTGGCATCTTGC
ATTTCGGCAAGATAACCTGTCAAAACCAATTGTATGGTTGGGACATGCGT
TTCCGGACAGTGTCGTTCATAGCGTAAATCTTGCGAAGGGATACTACACA
CTATCAAACTCAACAAGATATCGTACCAGGAGAAATATTAGGATGAAAAT
GATTCATATGAAGTTCAAATCGTGGTATGACTATCTTCGAAAAGGTCGTG
GTGGACGGAATTCAATGGCAGTGAAGGCATGGAACGTGTCATCGGAATGG
ACTGAAGAGAATGCGTCTCGAAAACATCTTCAGAAAATAAACTGCGAGAG
CTTCACCGATTTTCGAACAAGTTGGAGAAGGGTTGTTTCAAGAAATGTGA
GGAAGGCAAAGATCGTAGGTTACGGTGAGAAGGAAAGACGGCATAATGCG
GTGAAAAAAATCGGATACGCTTGGAAACATCAGCATGATTTGGAGTCGAA
TGTTTTGATCAATAGTATTATTGAAAGAGAAAGCGAATCATGA

protein sequence of Gcaud2984.t1

>Gcaud2984.t1 ID=Gcaud2984.t1|Name=Gcaud2984.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=381bp
MNRELRIGERLSLLLSPTILEGIAELTSSSSLLDHVHAMKKMENGSYILP
TDAFWEGQIDPRMQSGDGRYEVCLMTQEKIFAEFLPEWVDYHRKVGVDHV
YVYDNNAPHNISKLFEHRNDVEIVYWPWHRSQIQAQNHFILNGRRRCKWA
ILTDVDEYLMIQAMERADEDNALKIYLRSLKEEVYCSQIKLGCVVLGSSG
HRIRPRIPLAEAYWHLAFRQDNLSKPIVWLGHAFPDSVVHSVNLAKGYYT
LSNSTRYRTRRNIRMKMIHMKFKSWYDYLRKGRGGRNSMAVKAWNVSSEW
TEENASRKHLQKINCESFTDFRTSWRRVVSRNVRKAKIVGYGEKERRHNA
VKKIGYAWKHQHDLESNVLINSIIERESES*

mRNA from alignment at NODE_641_length_20422_cov_4.560720:463..1605+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2984.t1 ID=Gcaud2984.t1|Name=Gcaud2984.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:463..1605+ (Gracilaria caudata M_176_S67 male)
ATGAATCGTGAACTTCGTATTGGAGAACGGTTGTCTCTACTTCTATCACC
AACGATTTTGGAAGGGATTGCTGAATTGACGTCTTCTTCTTCGCTGCTAG
ATCATGTCCATGCCATGAAGAAAATGGAGAATGGGTCGTACATACTTCCG
ACCGATGCGTTTTGGGAGGGACAGATTGATCCTCGCATGCAAAGTGGGGA
TGGGAGGTATGAGGTGTGTTTGATGACGCAAGAAAAGATATTTGCAGAGT
TTCTTCCGGAATGGGTTGACTACCACCGTAAAGTTGGAGTGGATCACGTG
TATGTATATGATAATAATGCACCACACAACATATCCAAACTGTTTGAGCA
CAGAAATGATGTGGAGATTGTGTACTGGCCATGGCACCGCTCTCAGATAC
AAGCTCAAAACCATTTCATCTTGAATGGACGTCGACGATGTAAATGGGCA
ATCCTAACTGATGTAGATGAATATCTGATGATTCAGGCAATGGAAAGGGC
TGATGAAGACAATGCTTTGAAGATATATTTGAGGAGCCTAAAGGAAGAGG
TCTATTGTTCTCAGATAAAGTTGGGGTGCGTTGTTCTTGGTTCATCTGGG
CATAGAATTCGACCAAGAATACCTCTTGCAGAAGCCTATTGGCATCTTGC
ATTTCGGCAAGATAACCTGTCAAAACCAATTGTATGGTTGGGACATGCGT
TTCCGGACAGTGTCGTTCATAGCGTAAATCTTGCGAAGGGATACTACACA
CTATCAAACTCAACAAGATATCGTACCAGGAGAAATATTAGGATGAAAAT
GATTCATATGAAGTTCAAATCGTGGTATGACTATCTTCGAAAAGGTCGTG
GTGGACGGAATTCAATGGCAGTGAAGGCATGGAACGTGTCATCGGAATGG
ACTGAAGAGAATGCGTCTCGAAAACATCTTCAGAAAATAAACTGCGAGAG
CTTCACCGATTTTCGAACAAGTTGGAGAAGGGTTGTTTCAAGAAATGTGA
GGAAGGCAAAGATCGTAGGTTACGGTGAGAAGGAAAGACGGCATAATGCG
GTGAAAAAAATCGGATACGCTTGGAAACATCAGCATGATTTGGAGTCGAA
TGTTTTGATCAATAGTATTATTGAAAGAGAAAGCGAATCATGA

Coding sequence (CDS) from alignment at NODE_641_length_20422_cov_4.560720:463..1605+

>Gcaud2984.t1 ID=Gcaud2984.t1|Name=Gcaud2984.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1143bp|location=Sequence derived from alignment at NODE_641_length_20422_cov_4.560720:463..1605+ (Gracilaria caudata M_176_S67 male)
ATGAATCGTGAACTTCGTATTGGAGAACGGTTGTCTCTACTTCTATCACC
AACGATTTTGGAAGGGATTGCTGAATTGACGTCTTCTTCTTCGCTGCTAG
ATCATGTCCATGCCATGAAGAAAATGGAGAATGGGTCGTACATACTTCCG
ACCGATGCGTTTTGGGAGGGACAGATTGATCCTCGCATGCAAAGTGGGGA
TGGGAGGTATGAGGTGTGTTTGATGACGCAAGAAAAGATATTTGCAGAGT
TTCTTCCGGAATGGGTTGACTACCACCGTAAAGTTGGAGTGGATCACGTG
TATGTATATGATAATAATGCACCACACAACATATCCAAACTGTTTGAGCA
CAGAAATGATGTGGAGATTGTGTACTGGCCATGGCACCGCTCTCAGATAC
AAGCTCAAAACCATTTCATCTTGAATGGACGTCGACGATGTAAATGGGCA
ATCCTAACTGATGTAGATGAATATCTGATGATTCAGGCAATGGAAAGGGC
TGATGAAGACAATGCTTTGAAGATATATTTGAGGAGCCTAAAGGAAGAGG
TCTATTGTTCTCAGATAAAGTTGGGGTGCGTTGTTCTTGGTTCATCTGGG
CATAGAATTCGACCAAGAATACCTCTTGCAGAAGCCTATTGGCATCTTGC
ATTTCGGCAAGATAACCTGTCAAAACCAATTGTATGGTTGGGACATGCGT
TTCCGGACAGTGTCGTTCATAGCGTAAATCTTGCGAAGGGATACTACACA
CTATCAAACTCAACAAGATATCGTACCAGGAGAAATATTAGGATGAAAAT
GATTCATATGAAGTTCAAATCGTGGTATGACTATCTTCGAAAAGGTCGTG
GTGGACGGAATTCAATGGCAGTGAAGGCATGGAACGTGTCATCGGAATGG
ACTGAAGAGAATGCGTCTCGAAAACATCTTCAGAAAATAAACTGCGAGAG
CTTCACCGATTTTCGAACAAGTTGGAGAAGGGTTGTTTCAAGAAATGTGA
GGAAGGCAAAGATCGTAGGTTACGGTGAGAAGGAAAGACGGCATAATGCG
GTGAAAAAAATCGGATACGCTTGGAAACATCAGCATGATTTGGAGTCGAA
TGTTTTGATCAATAGTATTATTGAAAGAGAAAGCGAATCATGA