Gcaud2980.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2980.t1
Unique Name	Gcaud2980.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	490

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1512_length_10056_cov_4.317812	contig	NODE_1512_length_10056_cov_4.317812:6021..7490 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2980	Gcaud2980	Gracilaria caudata M_176_S67 male	gene	NODE_1512_length_10056_cov_4.317812 6021..7490 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2980.t1.start1	Gcaud2980.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1512_length_10056_cov_4.317812 6021..6023 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2980.t1.CDS1	Gcaud2980.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1512_length_10056_cov_4.317812 6021..7490 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2980.t1.exon1	Gcaud2980.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1512_length_10056_cov_4.317812 6021..7490 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2980.t1.stop1	Gcaud2980.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1512_length_10056_cov_4.317812 7488..7490 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2980.t1	Gcaud2980.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1512_length_10056_cov_4.317812 6021..7490 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1512_length_10056_cov_4.317812:6021..7490+
coding sequence from alignment at NODE_1512_length_10056_cov_4.317812:6021..7490+

mRNA sequence

>Gcaud2980.t1 ID=Gcaud2980.t1|Name=Gcaud2980.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=490bp
MFYCTGTYFRHAEALRELYLQPTASPSAPTPQLHFYPPGRFAVPPTWADL
TTKHPHLQLPAPRAQRRNRAFVSSLPVNTSDGLGHRFTMINMELYIAIKL
NVSYIHRVSRYASLSPDHDPKAVERLFGWWQWNDTRDELMDTECANYTLQ
PSPEQCRDTQHVCVQLAQQSVFKHLVHVPTDTIDCFLSKSIPKQTCVDAL
AAFAELHNEPDTLFQMQASTKWCPTEHRYGDFTETSTWLREHYWHFHENT
TLLDGEYVNDSMMVRRFEKVLNEDLTRILPFSENRVQIAVHIRRGDFFNY
TSRVIIPDDVYADTIAITKNTIDDVFGGDIGTTVSIFSEGVVRSGQYRSM
HDIGRMESLYVTNEGNTVKQVDEHWQNLLAKRLKRGSDLSVQSFIATDTV
STVHTMLAADVFIGSLSGLSAQIASVLSRGVVIMPYKVGADGKLRPSEHM
NLRFNFGEDMKTSVDEDVLKKSVRSVLEEHVKKGVIHAS*

spliced messenger RNA

>Gcaud2980.t1 ID=Gcaud2980.t1|Name=Gcaud2980.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at NODE_1512_length_10056_cov_4.317812:6021..7490+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTACTGCACTGGCACGTATTTCCGACATGCGGAAGCTTTGCGTGA
GCTCTACCTTCAACCAACAGCGTCTCCGTCAGCCCCAACTCCTCAGCTTC
ATTTCTATCCGCCAGGTCGCTTTGCAGTGCCACCAACATGGGCGGATCTC
ACAACAAAACACCCGCACCTGCAACTGCCCGCACCTCGCGCTCAACGTCG
CAATCGTGCCTTCGTGTCTTCGCTTCCCGTCAACACATCCGATGGATTGG
GGCATCGTTTTACAATGATCAACATGGAGCTTTACATCGCCATCAAACTC
AACGTCAGTTACATTCACCGAGTGTCGCGGTACGCAAGTCTCAGTCCCGA
TCATGATCCCAAAGCAGTGGAGAGACTGTTCGGATGGTGGCAATGGAACG
ACACCAGAGACGAGCTCATGGACACCGAATGCGCCAATTATACACTACAA
CCAAGCCCCGAACAATGTCGCGATACCCAACACGTTTGTGTCCAATTGGC
ACAGCAGAGTGTGTTCAAACATCTGGTACACGTTCCCACCGACACGATTG
ATTGCTTTTTATCCAAGAGCATCCCGAAACAAACTTGCGTAGATGCGCTT
GCAGCATTCGCAGAATTGCATAACGAACCTGATACTTTGTTTCAAATGCA
AGCGTCCACGAAATGGTGCCCGACTGAACATCGATACGGTGACTTTACTG
AAACGTCCACATGGCTCCGTGAGCATTACTGGCATTTTCATGAGAACACA
ACCCTGTTAGACGGCGAATACGTGAACGACAGCATGATGGTAAGGCGATT
CGAGAAAGTCCTCAACGAGGACCTCACAAGAATTTTGCCCTTCAGTGAGA
ATCGTGTGCAGATCGCAGTACATATACGGAGAGGTGACTTCTTCAACTAC
ACAAGTCGTGTCATAATTCCCGACGATGTGTACGCCGACACAATTGCAAT
CACAAAAAATACCATCGACGACGTGTTTGGTGGCGATATCGGAACAACCG
TTTCGATTTTCTCGGAGGGAGTAGTGCGCAGTGGTCAATATCGCTCGATG
CATGACATTGGCCGAATGGAATCTCTGTACGTCACAAACGAGGGAAACAC
AGTGAAGCAAGTCGACGAACACTGGCAAAACTTGCTCGCAAAGCGTCTAA
AACGCGGTTCGGATTTGAGCGTGCAGTCGTTTATTGCCACGGATACGGTG
TCAACTGTCCACACTATGTTGGCAGCAGATGTGTTCATCGGCAGCCTTTC
CGGGCTGTCGGCTCAAATTGCGAGCGTCTTGTCGCGGGGCGTTGTGATCA
TGCCGTACAAGGTTGGCGCGGATGGCAAGCTTCGACCGTCGGAGCACATG
AATCTGCGATTCAATTTCGGGGAGGACATGAAGACGTCTGTGGATGAAGA
CGTGTTGAAGAAAAGTGTGCGCAGCGTTTTGGAGGAGCACGTCAAGAAGG
GCGTGATACACGCGAGCTAG

protein sequence of Gcaud2980.t1

>Gcaud2980.t1 ID=Gcaud2980.t1|Name=Gcaud2980.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=490bp
MFYCTGTYFRHAEALRELYLQPTASPSAPTPQLHFYPPGRFAVPPTWADL
TTKHPHLQLPAPRAQRRNRAFVSSLPVNTSDGLGHRFTMINMELYIAIKL
NVSYIHRVSRYASLSPDHDPKAVERLFGWWQWNDTRDELMDTECANYTLQ
PSPEQCRDTQHVCVQLAQQSVFKHLVHVPTDTIDCFLSKSIPKQTCVDAL
AAFAELHNEPDTLFQMQASTKWCPTEHRYGDFTETSTWLREHYWHFHENT
TLLDGEYVNDSMMVRRFEKVLNEDLTRILPFSENRVQIAVHIRRGDFFNY
TSRVIIPDDVYADTIAITKNTIDDVFGGDIGTTVSIFSEGVVRSGQYRSM
HDIGRMESLYVTNEGNTVKQVDEHWQNLLAKRLKRGSDLSVQSFIATDTV
STVHTMLAADVFIGSLSGLSAQIASVLSRGVVIMPYKVGADGKLRPSEHM
NLRFNFGEDMKTSVDEDVLKKSVRSVLEEHVKKGVIHAS*

mRNA from alignment at NODE_1512_length_10056_cov_4.317812:6021..7490+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2980.t1 ID=Gcaud2980.t1|Name=Gcaud2980.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at NODE_1512_length_10056_cov_4.317812:6021..7490+ (Gracilaria caudata M_176_S67 male)
ATGTTCTACTGCACTGGCACGTATTTCCGACATGCGGAAGCTTTGCGTGA
GCTCTACCTTCAACCAACAGCGTCTCCGTCAGCCCCAACTCCTCAGCTTC
ATTTCTATCCGCCAGGTCGCTTTGCAGTGCCACCAACATGGGCGGATCTC
ACAACAAAACACCCGCACCTGCAACTGCCCGCACCTCGCGCTCAACGTCG
CAATCGTGCCTTCGTGTCTTCGCTTCCCGTCAACACATCCGATGGATTGG
GGCATCGTTTTACAATGATCAACATGGAGCTTTACATCGCCATCAAACTC
AACGTCAGTTACATTCACCGAGTGTCGCGGTACGCAAGTCTCAGTCCCGA
TCATGATCCCAAAGCAGTGGAGAGACTGTTCGGATGGTGGCAATGGAACG
ACACCAGAGACGAGCTCATGGACACCGAATGCGCCAATTATACACTACAA
CCAAGCCCCGAACAATGTCGCGATACCCAACACGTTTGTGTCCAATTGGC
ACAGCAGAGTGTGTTCAAACATCTGGTACACGTTCCCACCGACACGATTG
ATTGCTTTTTATCCAAGAGCATCCCGAAACAAACTTGCGTAGATGCGCTT
GCAGCATTCGCAGAATTGCATAACGAACCTGATACTTTGTTTCAAATGCA
AGCGTCCACGAAATGGTGCCCGACTGAACATCGATACGGTGACTTTACTG
AAACGTCCACATGGCTCCGTGAGCATTACTGGCATTTTCATGAGAACACA
ACCCTGTTAGACGGCGAATACGTGAACGACAGCATGATGGTAAGGCGATT
CGAGAAAGTCCTCAACGAGGACCTCACAAGAATTTTGCCCTTCAGTGAGA
ATCGTGTGCAGATCGCAGTACATATACGGAGAGGTGACTTCTTCAACTAC
ACAAGTCGTGTCATAATTCCCGACGATGTGTACGCCGACACAATTGCAAT
CACAAAAAATACCATCGACGACGTGTTTGGTGGCGATATCGGAACAACCG
TTTCGATTTTCTCGGAGGGAGTAGTGCGCAGTGGTCAATATCGCTCGATG
CATGACATTGGCCGAATGGAATCTCTGTACGTCACAAACGAGGGAAACAC
AGTGAAGCAAGTCGACGAACACTGGCAAAACTTGCTCGCAAAGCGTCTAA
AACGCGGTTCGGATTTGAGCGTGCAGTCGTTTATTGCCACGGATACGGTG
TCAACTGTCCACACTATGTTGGCAGCAGATGTGTTCATCGGCAGCCTTTC
CGGGCTGTCGGCTCAAATTGCGAGCGTCTTGTCGCGGGGCGTTGTGATCA
TGCCGTACAAGGTTGGCGCGGATGGCAAGCTTCGACCGTCGGAGCACATG
AATCTGCGATTCAATTTCGGGGAGGACATGAAGACGTCTGTGGATGAAGA
CGTGTTGAAGAAAAGTGTGCGCAGCGTTTTGGAGGAGCACGTCAAGAAGG
GCGTGATACACGCGAGCTAG

Coding sequence (CDS) from alignment at NODE_1512_length_10056_cov_4.317812:6021..7490+

>Gcaud2980.t1 ID=Gcaud2980.t1|Name=Gcaud2980.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1470bp|location=Sequence derived from alignment at NODE_1512_length_10056_cov_4.317812:6021..7490+ (Gracilaria caudata M_176_S67 male)
ATGTTCTACTGCACTGGCACGTATTTCCGACATGCGGAAGCTTTGCGTGA
GCTCTACCTTCAACCAACAGCGTCTCCGTCAGCCCCAACTCCTCAGCTTC
ATTTCTATCCGCCAGGTCGCTTTGCAGTGCCACCAACATGGGCGGATCTC
ACAACAAAACACCCGCACCTGCAACTGCCCGCACCTCGCGCTCAACGTCG
CAATCGTGCCTTCGTGTCTTCGCTTCCCGTCAACACATCCGATGGATTGG
GGCATCGTTTTACAATGATCAACATGGAGCTTTACATCGCCATCAAACTC
AACGTCAGTTACATTCACCGAGTGTCGCGGTACGCAAGTCTCAGTCCCGA
TCATGATCCCAAAGCAGTGGAGAGACTGTTCGGATGGTGGCAATGGAACG
ACACCAGAGACGAGCTCATGGACACCGAATGCGCCAATTATACACTACAA
CCAAGCCCCGAACAATGTCGCGATACCCAACACGTTTGTGTCCAATTGGC
ACAGCAGAGTGTGTTCAAACATCTGGTACACGTTCCCACCGACACGATTG
ATTGCTTTTTATCCAAGAGCATCCCGAAACAAACTTGCGTAGATGCGCTT
GCAGCATTCGCAGAATTGCATAACGAACCTGATACTTTGTTTCAAATGCA
AGCGTCCACGAAATGGTGCCCGACTGAACATCGATACGGTGACTTTACTG
AAACGTCCACATGGCTCCGTGAGCATTACTGGCATTTTCATGAGAACACA
ACCCTGTTAGACGGCGAATACGTGAACGACAGCATGATGGTAAGGCGATT
CGAGAAAGTCCTCAACGAGGACCTCACAAGAATTTTGCCCTTCAGTGAGA
ATCGTGTGCAGATCGCAGTACATATACGGAGAGGTGACTTCTTCAACTAC
ACAAGTCGTGTCATAATTCCCGACGATGTGTACGCCGACACAATTGCAAT
CACAAAAAATACCATCGACGACGTGTTTGGTGGCGATATCGGAACAACCG
TTTCGATTTTCTCGGAGGGAGTAGTGCGCAGTGGTCAATATCGCTCGATG
CATGACATTGGCCGAATGGAATCTCTGTACGTCACAAACGAGGGAAACAC
AGTGAAGCAAGTCGACGAACACTGGCAAAACTTGCTCGCAAAGCGTCTAA
AACGCGGTTCGGATTTGAGCGTGCAGTCGTTTATTGCCACGGATACGGTG
TCAACTGTCCACACTATGTTGGCAGCAGATGTGTTCATCGGCAGCCTTTC
CGGGCTGTCGGCTCAAATTGCGAGCGTCTTGTCGCGGGGCGTTGTGATCA
TGCCGTACAAGGTTGGCGCGGATGGCAAGCTTCGACCGTCGGAGCACATG
AATCTGCGATTCAATTTCGGGGAGGACATGAAGACGTCTGTGGATGAAGA
CGTGTTGAAGAAAAGTGTGCGCAGCGTTTTGGAGGAGCACGTCAAGAAGG
GCGTGATACACGCGAGCTAG