Gcaud2960.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2960.t1
Unique NameGcaud2960.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_368_length_28566_cov_4.066058contigNODE_368_length_28566_cov_4.066058:16467..16969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog82508.K1VV91
PFAMsDUF3767
Max annot lvl4751|Fungi
KEGG koko:K18184
KEGG Pathwayko04714,map04714
Evalue6.88e-07
EggNOG OGs2CBZQ@1|root,2S3BD@2759|Eukaryota,3ACAC@33154|Opisthokonta,3P6P5@4751|Fungi,3V29G@5204|Basidiomycota,3VFR6@5234|Tremellales
DescriptionProtein of unknown function (DUF3767)
COG categoryS
BRITEko00000,ko00001,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2960Gcaud2960Gracilaria caudata M_176_S67 malegeneNODE_368_length_28566_cov_4.066058 16467..16969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2960.t1Gcaud2960.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_368_length_28566_cov_4.066058 16467..16969 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2960.t1.stop1Gcaud2960.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_368_length_28566_cov_4.066058 16467..16469 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2960.t1.CDS1Gcaud2960.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_368_length_28566_cov_4.066058 16467..16596 -
Gcaud2960.t1.CDS2Gcaud2960.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_368_length_28566_cov_4.066058 16679..16742 -
Gcaud2960.t1.CDS3Gcaud2960.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_368_length_28566_cov_4.066058 16816..16969 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2960.t1.exon1Gcaud2960.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_368_length_28566_cov_4.066058 16467..16596 -
Gcaud2960.t1.exon2Gcaud2960.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_368_length_28566_cov_4.066058 16679..16742 -
Gcaud2960.t1.exon3Gcaud2960.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_368_length_28566_cov_4.066058 16816..16969 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2960.t1.intron1Gcaud2960.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_368_length_28566_cov_4.066058 16597..16678 -
Gcaud2960.t1.intron2Gcaud2960.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_368_length_28566_cov_4.066058 16743..16815 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2960.t1.start1Gcaud2960.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_368_length_28566_cov_4.066058 16967..16969 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2960.t1 ID=Gcaud2960.t1|Name=Gcaud2960.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=116bp
MSAGDVEAPGDEERGKYSFLYELWSAPCFRESTLYGIGGGAAIGSMQLLR
SRAPMESAETMVKTGCAISLLSWVLCRRRYYEEREATYETLEQLRRSRAQ
QAAARAHELRRREER*
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spliced messenger RNA

>Gcaud2960.t1 ID=Gcaud2960.t1|Name=Gcaud2960.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp|location=Sequence derived from alignment at NODE_368_length_28566_cov_4.066058:16467..16969- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCGGGCGACGTGGAAGCACCAGGCGATGAGGAGCGGGGCAAGTA
CTCGTTTCTGTACGAACTGTGGTCGGCTCCGTGCTTCAGAGAGAGCACGT
TGTACGGCATTGGCGGCGGCGCCGCCATAGGCTCCATGCAACTGTTACGA
AGCAGAGCGCCGATGGAATCGGCCGAGACAATGGTGAAGACAGGCTGCGC
AATCTCGCTGCTAAGCTGGGTGCTCTGTCGTCGGCGCTACTACGAAGAGC
GCGAAGCCACCTACGAAACGCTGGAACAACTGCGTCGCAGTCGCGCGCAG
CAAGCCGCGGCACGCGCGCACGAGCTACGTCGTCGCGAAGAACGCTGA
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protein sequence of Gcaud2960.t1

>Gcaud2960.t1 ID=Gcaud2960.t1|Name=Gcaud2960.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=116bp
MSAGDVEAPGDEERGKYSFLYELWSAPCFRESTLYGIGGGAAIGSMQLLR
SRAPMESAETMVKTGCAISLLSWVLCRRRYYEEREATYETLEQLRRSRAQ
QAAARAHELRRREER*
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mRNA from alignment at NODE_368_length_28566_cov_4.066058:16467..16969-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2960.t1 ID=Gcaud2960.t1|Name=Gcaud2960.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=503bp|location=Sequence derived from alignment at NODE_368_length_28566_cov_4.066058:16467..16969- (Gracilaria caudata M_176_S67 male)
ATGAGTGCGGGCGACGTGGAAGCACCAGGCGATGAGGAGCGGGGCAAGTA
CTCGTTTCTGTACGAACTGTGGTCGGCTCCGTGCTTCAGAGAGAGCACGT
TGTACGGCATTGGCGGCGGCGCCGCCATAGGCTCCATGCAACTGTTACGA
AGCAGTGCGTTATAACTTGTTTTACTGGTGTTTGTGTGCGCGGAGAGACG
AGTGCTGACCGTGGAGCGTGAGTTCAGGAGCGCCGATGGAATCGGCCGAG
ACAATGGTGAAGACAGGCTGCGCAATCTCGCTGCTAAGCTGGTAAGTAAC
GCCTACGCCGTCGCGCGCCCCGTCCGCACGCAGCTCCGTTTTCTGACGCG
CGTGTCACCTGTCTCCATTGCAGGGTGCTCTGTCGTCGGCGCTACTACGA
AGAGCGCGAAGCCACCTACGAAACGCTGGAACAACTGCGTCGCAGTCGCG
CGCAGCAAGCCGCGGCACGCGCGCACGAGCTACGTCGTCGCGAAGAACGC
TGA
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Coding sequence (CDS) from alignment at NODE_368_length_28566_cov_4.066058:16467..16969-

>Gcaud2960.t1 ID=Gcaud2960.t1|Name=Gcaud2960.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=348bp|location=Sequence derived from alignment at NODE_368_length_28566_cov_4.066058:16467..16969- (Gracilaria caudata M_176_S67 male)
ATGAGTGCGGGCGACGTGGAAGCACCAGGCGATGAGGAGCGGGGCAAGTA
CTCGTTTCTGTACGAACTGTGGTCGGCTCCGTGCTTCAGAGAGAGCACGT
TGTACGGCATTGGCGGCGGCGCCGCCATAGGCTCCATGCAACTGTTACGA
AGCAGAGCGCCGATGGAATCGGCCGAGACAATGGTGAAGACAGGCTGCGC
AATCTCGCTGCTAAGCTGGGTGCTCTGTCGTCGGCGCTACTACGAAGAGC
GCGAAGCCACCTACGAAACGCTGGAACAACTGCGTCGCAGTCGCGCGCAG
CAAGCCGCGGCACGCGCGCACGAGCTACGTCGTCGCGAAGAACGCTGA
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